FvH4_5g03970

Cmp-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015122
Physical Location & Seq
Reverse (-)
2366026 .. 2370344
4319 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03970.t1

Sequence Viewer

Length: 996 bp
ATGCAGTGGTACTTTGTTGCCGCGCTACTCACAGTCCTCACCAGCTCTCAGGGTATCTTGACAACTCTCTCTCAAAGTAATGGCAAATATAAGTATGACTATGCAACTGTTCCGTTTCTTGCTGAAGTATTCAAGCTAGCAGTTTCCTGTGTACTTCTTTGGCGAGAGTGTCGCACATCCCCTTCTGTACGAATGACTACAGAATGGAAGAGCGTGCGCTTATATCCTATTCCTTCAATCATATATCTAGTTCATAACAATGTTCAGTTTGCAACTCTTGTTTATGTGGATACTTCCACATATCAGATAATGGGTAATCTGAAAATTGTTACCACAGGCATATTATTCAGGCTATTTCTAAGAAGAAAGCTTTCTAATCTGCAATGGATGGCAATTGTTCTATTAGCTGTTGGAACGACGACAAGCCAGGTTAAAGGTTGTGGAGAAGCATCATGTGATTCATTGTTCTCAGCACCAATCCAAGGATATGTGCTGGGGATCCTATCTGCTTGTATGTCAGCATTAGCAGGTGTTTACACAGAGTTTCTTATGAAGAAGAACAATGATAGCTTATACTGGCAGAATGTACAATTGTATACGTTTGGTGTGATTTTCAATATGGCACGACTTGTCTTCGATGACTTCAGGGGTGGATTTGAGAATGGACCTTGGTGGCAACGCATTTTCAATGGATATAGTGTTACAACTTGGTTGGTGGTGTTAAATCTTGGGTCTACAGGCTTGCTAGTCTCATGGTTGATGAAGTATGCTGACAATATTGTGAAGGTGTATTCTACTTCAATGGCAATGCTGCTGACAATGGTCTTATCTGTATACCTTTTCACTTTCAAGCCCACAGTGCAGCTCTTTTTAGGTATTATTATCTGTATGATGTCACTACACATGTACTTTGCCCCTCCAAACACACTGGTAGACTTACCATTGCCTATAAAAGCTACCCCTGAGAGTATGAAAGAGGTTGCTGTTGTTGAATGA

Protein Analysis

332

Amino Acids

37.36

Weight (kDa)

9.02

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 4 - 303 1.4e-55 Nucleotide-sugar transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41760 AT5G41760
fragaria_vesca FvH4_5g03970
malus_domestica MD06G1101100.v1.1 MD14G1120800.v1.1
prunus_persica Prupe.5G114600_v2.0.a1
pyrus_communis pycom06g09620
rosa_chinensis RchiOBHm_Chr7g0195531
rosa_laevigata RLG00000004112
rosa_multiflora Rmu_co8492915.1_g000001 Rmu_ssc0000078.1_g000003
rosa_roxburghii Rroxscaffold_3G00260390
rosa_rugosa Rorug07G0023900
rosa_samantha Rh7CG156800 Rh7DG152600
rosa_wichuraiana Rw7G012950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 518
AccI GTMKAC 4 cut(s) 596, 734, 834, 933
AccII CGCG 1 cut(s) 23
AciI CCGC 1 cut(s) 21
AclWI GGATC 2 cut(s) 493, 506
AcuI CTGAAG 2 cut(s) 144, 628
AfaI GTAC 5 cut(s) 11, 153, 189, 588, 908
AfiI CCNNNNNNNGG 1 cut(s) 482
AflIII ACRYGT 1 cut(s) 903
AgsI TTSAA 7 cut(s) 133, 237, 616, 688, 801, 850, 992
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 7 cut(s) 45, 136, 370, 407, 570, 865, 956
AluI AGCT 7 cut(s) 45, 136, 370, 407, 570, 865, 956
Alw26I GTCTC 1 cut(s) 754
AlwI GGATC 2 cut(s) 493, 506
ApeKI GCWGC 2 cut(s) 811, 862
Asp700I GAANNNNTTC 1 cut(s) 370
AspLEI GCGC 2 cut(s) 25, 219
AspS9I GGNCC 1 cut(s) 665
AsuHPI GGTGA 1 cut(s) 31
AsuNHI GCTAGC 1 cut(s) 136
AvaII GGWCC 1 cut(s) 665
BamHI GGATCC 1 cut(s) 498
BbsI GAAGAC 1 cut(s) 625
BbvI GCAGC 2 cut(s) 798, 874
BccI CCATC 1 cut(s) 382
BciT130I CCWGG 1 cut(s) 428
BciVI GTATCC 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 754
BfaI CTAG 3 cut(s) 137, 248, 746
BfmI CTRYAG 2 cut(s) 198, 735
BfuAI ACCTGC 1 cut(s) 518
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 3 cut(s) 21, 812, 863
BlsI GCNGC 3 cut(s) 22, 813, 864
Bme1390I CCNGG 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 665
BmgT120I GGNCC 1 cut(s) 665
BmiI GGNNCC 1 cut(s) 500
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 458
BmtI GCTAGC 1 cut(s) 140
BoxI GACNNNNGTC 1 cut(s) 821
BpiI GAAGAC 1 cut(s) 625
BsaJI CCNNGG 2 cut(s) 481, 668
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse1I ACTGG 2 cut(s) 581, 933
Bse3DI GCAATG 3 cut(s) 389, 813, 941
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 481, 668
BseGI GGATG 2 cut(s) 176, 393
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMI GCAATG 3 cut(s) 389, 813, 941
BseMII CTCAG 3 cut(s) 62, 483, 954
BseNI ACTGG 2 cut(s) 581, 933
BseXI GCAGC 2 cut(s) 798, 874
BseYI CCCAGC 1 cut(s) 493
BsgI GTGCAG 1 cut(s) 881
Bsh1236I CGCG 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 1 cut(s) 754
Bsp1407I TGTACA 1 cut(s) 586
Bsp143I GATC 1 cut(s) 498
BspACI CCGC 1 cut(s) 21
BspCNI CTCAG 3 cut(s) 61, 482, 955
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 500
BspMI ACCTGC 1 cut(s) 518
BspOI GCTAGC 1 cut(s) 140
BspPI GGATC 2 cut(s) 493, 506
BspQI GCTCTTC 1 cut(s) 203
BsrDI GCAATG 3 cut(s) 389, 813, 941
BsrGI TGTACA 1 cut(s) 586
BsrI ACTGG 2 cut(s) 581, 933
BssECI CCNNGG 2 cut(s) 481, 668
BssMI GATC 1 cut(s) 498
BssNAI GTATAC 2 cut(s) 597, 835
BssT1I CCWWGG 2 cut(s) 481, 668
Bst1107I GTATAC 2 cut(s) 597, 835
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 34, 109, 859
Bst6I CTCTTC 1 cut(s) 203
BstAUI TGTACA 1 cut(s) 586
BstC8I GCNNGC 3 cut(s) 138, 215, 743
BstDEI CTNAG 4 cut(s) 48, 359, 469, 963
BstF5I GGATG 2 cut(s) 176, 393
BstFNI CGCG 1 cut(s) 23
BstHHI GCGC 2 cut(s) 25, 219
BstKTI GATC 1 cut(s) 501
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 1 cut(s) 498
BstMWI GCNNNNNNNGC 1 cut(s) 859
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 1 cut(s) 907
BstPAI GACNNNNGTC 1 cut(s) 821
BstSCI CCNGG 1 cut(s) 426
BstSFI CTRYAG 2 cut(s) 198, 735
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 2 cut(s) 798, 874
BstV2I GAAGAC 1 cut(s) 625
BstX2I RGATCY 1 cut(s) 498
BstYI RGATCY 1 cut(s) 498
BstZ17I GTATAC 2 cut(s) 597, 835
BsuI GTATCC 1 cut(s) 283
BtsCI GGATG 2 cut(s) 176, 393
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 3 cut(s) 11, 864, 926
BveI ACCTGC 1 cut(s) 518
Cac8I GCNNGC 3 cut(s) 138, 215, 743
CfoI GCGC 2 cut(s) 25, 219
Cfr13I GGNCC 1 cut(s) 665
Csp6I GTAC 5 cut(s) 10, 152, 188, 587, 907
CviAII CATG 3 cut(s) 453, 753, 904
CviQI GTAC 5 cut(s) 10, 152, 188, 587, 907
DdeI CTNAG 4 cut(s) 48, 359, 469, 963
DpnI GATC 1 cut(s) 500
DpnII GATC 1 cut(s) 498
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco130I CCWWGG 2 cut(s) 481, 668
Eco47I GGWCC 1 cut(s) 665
Eco57I CTGAAG 2 cut(s) 144, 628
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 2 cut(s) 481, 668
ErhI CCWWGG 2 cut(s) 481, 668
FaeI CATG 3 cut(s) 456, 756, 907
FatI CATG 3 cut(s) 452, 752, 903
FblI GTMKAC 4 cut(s) 596, 734, 834, 933
Fnu4HI GCNGC 3 cut(s) 21, 812, 863
FokI GGATG 2 cut(s) 163, 400
Fsp4HI GCNGC 3 cut(s) 21, 812, 863
FspBI CTAG 3 cut(s) 137, 248, 746
GlaI GCGC 2 cut(s) 24, 218
GluI GCNGC 3 cut(s) 21, 812, 863
GsaI CCCAGC 1 cut(s) 497
HhaI GCGC 2 cut(s) 25, 219
Hin1II CATG 3 cut(s) 456, 756, 907
Hin6I GCGC 2 cut(s) 23, 217
HinP1I GCGC 2 cut(s) 23, 217
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 1 cut(s) 458
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 6 cut(s) 152, 535, 597, 735, 835, 934
Hpy188I TCNGA 2 cut(s) 306, 321
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 6 cut(s) 152, 535, 597, 735, 835, 934
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 3 cut(s) 192, 243, 778
HpyCH4III ACNGT 3 cut(s) 34, 109, 859
HpyCH4IV ACGT 1 cut(s) 599
HpyCH4V TGCA 5 cut(s) 4, 104, 272, 382, 862
HpyF10VI GCNNNNNNNGC 1 cut(s) 859
HpyF3I CTNAG 4 cut(s) 48, 359, 469, 963
HpySE526I ACGT 1 cut(s) 599
Hsp92II CATG 3 cut(s) 456, 756, 907
HspAI GCGC 2 cut(s) 23, 217
Kzo9I GATC 1 cut(s) 498
LguI GCTCTTC 1 cut(s) 203
Lsp1109I GCAGC 2 cut(s) 798, 874
LweI GCATC 1 cut(s) 458
MaeI CTAG 3 cut(s) 137, 248, 746
MaeII ACGT 1 cut(s) 599
MaeIII GTNAC 3 cut(s) 328, 700, 894
MalI GATC 1 cut(s) 500
MboI GATC 1 cut(s) 498
MboII GAAGA 5 cut(s) 220, 375, 565, 568, 625
MfeI CAATTG 2 cut(s) 393, 590
MflI RGATCY 1 cut(s) 498
MluCI AATT 3 cut(s) 324, 393, 590
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 3 cut(s) 47, 927, 970
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 2 cut(s) 432, 722
MslI CAYNNNNRTG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 428
MunI CAATTG 2 cut(s) 393, 590
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 859
NdeII GATC 1 cut(s) 498
NheI GCTAGC 1 cut(s) 136
NlaIII CATG 3 cut(s) 456, 756, 907
NlaIV GGNNCC 1 cut(s) 500
NmuCI GTSAC 1 cut(s) 894
NspI RCATGY 1 cut(s) 907
PaqCI CACCTGC 1 cut(s) 518
PciI ACATGT 1 cut(s) 903
PciSI GCTCTTC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 458
PkrI GCNGC 3 cut(s) 22, 813, 864
PscI ACATGT 1 cut(s) 903
PshAI GACNNNNGTC 1 cut(s) 821
Psp6I CCWGG 1 cut(s) 426
PspFI CCCAGC 1 cut(s) 493
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 500
PspPI GGNCC 1 cut(s) 665
PsuI RGATCY 1 cut(s) 498
RsaI GTAC 5 cut(s) 11, 153, 189, 588, 908
RsaNI GTAC 5 cut(s) 10, 152, 188, 587, 907
RseI CAYNNNNRTG 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 2 cut(s) 432, 722
SatI GCNGC 3 cut(s) 21, 812, 863
Sau3AI GATC 1 cut(s) 498
Sau96I GGNCC 1 cut(s) 665
ScrFI CCNGG 1 cut(s) 428
SfaNI GCATC 1 cut(s) 458
SfcI CTRYAG 2 cut(s) 198, 735
SinI GGWCC 1 cut(s) 665
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 3 cut(s) 324, 393, 590
SsiI CCGC 1 cut(s) 21
SspI AATATT 1 cut(s) 778
SspMI CTAG 3 cut(s) 137, 248, 746
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 2 cut(s) 481, 668
TaaI ACNGT 3 cut(s) 34, 109, 859
TaiI ACGT 1 cut(s) 602
TaqI TCGA 1 cut(s) 636
TasI AATT 3 cut(s) 324, 393, 590
TatI WGTACW 3 cut(s) 151, 586, 906
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 2 cut(s) 432, 722
Tru9I TTAA 2 cut(s) 432, 722
TscAI CASTG 2 cut(s) 864, 933
TseFI GTSAC 1 cut(s) 894
TseI GCWGC 2 cut(s) 811, 862
Tsp45I GTSAC 1 cut(s) 894
TspDTI ATGAA 5 cut(s) 242, 450, 566, 776, 986
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 2 cut(s) 864, 933
VpaK11BI GGWCC 1 cut(s) 665
XceI RCATGY 1 cut(s) 907
XmiI GTMKAC 4 cut(s) 596, 734, 834, 933
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 3 cut(s) 137, 248, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.