Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015122

Physical Location & Seq

Genomic Coordinates Forward (+)

12870914 .. 12875177

Gene Structure 4264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG156800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTTGTATCGGCAGAGGCCGACAGAATTGGTTTATCAAGTCAGTTGTGAACTGATATCTAGTTTTCAGTCTCCTAGCAGCAAATATTCATTCCTTCATATTGTATTGTGCCAGGGAATCTTGACAACTCTCTCTCAAAGTAATGGCAAATATAAGTACGACTATGCAACTGTTCCGTTTCTTGCTGAAGTATTCAAGCTAGCAGTTTCCTGTGTTTTTCTTTGGAGAGAGTGTCGCACATCTCCTTCTGTACGAATGACTACAGATTGGAAGAGCGTGCGCTTATATCCTATTCCTTCAATCATATATCTAGTTCATAACAATGTTCAGTTTGCTACTCTTGTTTATGTGGATACTTCCACATATCAGATAATGGGTAATCTGAAAATTGTTACCACAGGCATATTATTCAGGCTATTCCTAAGAAGAAAACTTTCTAATCTGCAATGGATGGCAATTGTTTTATTAGCTGTTGGAACGACCACAAGCCAGGTTAAAGGCTGTGGAGAAGCATCATGTGATTCTCTGTTCTCAGCACCAATCCAAGGATATGCGCTGGGCATCCTGTCTGCTTGTATGTCAGCATTAGCAGGTGTTTACACAGAGTTTCTTATGAAGAAGAACAATGATAGCCTGTACTGGCAGAATGTACAATTGTATACGTTTGGTGTAATTTTCAATATGGCACGGCTTGTCTTCGATGACTTCAGGGGTGGATTTGAGAATGGACCTTGGTGGCAACGGATTTTCAATGGATATAGTGTTACGACTTGGTTGGTGGTGTTAAATCTTGGGTCCACTGGCTTGCTGGTTTCATGGTTGATGAAGTATGCTGACAATATTGTGAAGGTAAATTTTTGGACTAACCCGTGGTTTCCTTTTGTAGATTTGAAAAAGAAAAAAAAAAATTCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

305

Amino Acids

34.92

Weight (kDa)

9.42

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	35 - 160	7.7e-06	EamA-like transporter family
Nuc_sug_transp	PF04142	46 - 283	4.1e-44	Nucleotide-sugar transporter
UAA	PF08449	66 - 225	9.8e-06	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41760 AT5G41760
fragaria_vesca	FvH4_5g03970
malus_domestica	MD06G1101100.v1.1 MD14G1120800.v1.1
prunus_persica	Prupe.5G114600_v2.0.a1
pyrus_communis	pycom06g09620
rosa_chinensis	RchiOBHm_Chr7g0195531
rosa_laevigata	RLG00000004112
rosa_multiflora	Rmu_co8492915.1_g000001 Rmu_ssc0000078.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260390
rosa_rugosa	Rorug07G0023900
rosa_samantha	Rh7CG156800 Rh7DG152600
rosa_wichuraiana	Rw7G012950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	581
Acc36I	ACCTGC	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	659
AcsI	RAATTY	2 cut(s)	853, 907
AcuI	CTGAAG	2 cut(s)	207, 691
AfaI	GTAC	4 cut(s)	158, 252, 638, 651
AfiI	CCNNNNNNNGG	1 cut(s)	545
AgsI	TTSAA	5 cut(s)	196, 300, 679, 751, 892
AjnI	CCWGG	2 cut(s)	111, 489
AluBI	AGCT	2 cut(s)	199, 470
AluI	AGCT	2 cut(s)	199, 470
Alw26I	GTCTC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	78
ApoI	RAATTY	2 cut(s)	853, 907
Asp700I	GAANNNNTTC	1 cut(s)	433
AspLEI	GCGC	2 cut(s)	282, 556
AspS9I	GGNCC	2 cut(s)	728, 795
AsuNHI	GCTAGC	1 cut(s)	199
AvaII	GGWCC	2 cut(s)	728, 795
BbsI	GAAGAC	1 cut(s)	688
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	1 cut(s)	704
BciT130I	CCWGG	2 cut(s)	113, 491
BciVI	GTATCC	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	4 cut(s)	60, 75, 200, 311
BfmI	CTRYAG	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	581
BfuI	GTATCC	1 cut(s)	346
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme1390I	CCNGG	2 cut(s)	113, 491
Bme18I	GGWCC	2 cut(s)	728, 795
BmgT120I	GGNCC	2 cut(s)	728, 795
BmiI	GGNNCC	1 cut(s)	796
BmrFI	CCNGG	2 cut(s)	113, 491
BmsI	GCATC	2 cut(s)	521, 570
BmtI	GCTAGC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	688
BsaJI	CCNNGG	4 cut(s)	112, 544, 731, 869
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse1I	ACTGG	2 cut(s)	644, 805
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	2 cut(s)	113, 491
BseDI	CCNNGG	4 cut(s)	112, 544, 731, 869
BseGI	GGATG	2 cut(s)	456, 561
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	2 cut(s)	644, 805
BseXI	GCAGC	1 cut(s)	90
BseYI	CCCAGC	1 cut(s)	556
BshFI	GGCC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmAI	GTCTC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	19
Bsp1407I	TGTACA	1 cut(s)	649
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	545
BspLI	GGNNCC	1 cut(s)	796
BspMI	ACCTGC	1 cut(s)	581
BspOI	GCTAGC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	649
BsrI	ACTGG	2 cut(s)	644, 805
BssECI	CCNNGG	4 cut(s)	112, 544, 731, 869
BssNAI	GTATAC	1 cut(s)	660
BssT1I	CCWWGG	2 cut(s)	544, 731
Bst1107I	GTATAC	1 cut(s)	660
Bst2UI	CCWGG	2 cut(s)	113, 491
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	649
BstC8I	GCNNGC	3 cut(s)	201, 278, 806
BstDEI	CTNAG	2 cut(s)	422, 532
BstDSI	CCRYGG	1 cut(s)	869
BstF5I	GGATG	2 cut(s)	456, 561
BstHHI	GCGC	2 cut(s)	282, 556
BstMAI	GTCTC	1 cut(s)	75
BstNI	CCWGG	2 cut(s)	113, 491
BstSCI	CCNGG	2 cut(s)	111, 489
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	688
BstZ17I	GTATAC	1 cut(s)	660
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	869
BtsCI	GGATG	2 cut(s)	456, 561
BtsIMutI	CAGTG	1 cut(s)	798
BveI	ACCTGC	1 cut(s)	581
Cac8I	GCNNGC	3 cut(s)	201, 278, 806
CfoI	GCGC	2 cut(s)	282, 556
Cfr13I	GGNCC	2 cut(s)	728, 795
Csp6I	GTAC	4 cut(s)	157, 251, 637, 650
CviAII	CATG	2 cut(s)	516, 816
CviJI	RGCY	9 cut(s)	19, 199, 415, 470, 489, 501, 633, 691, 804
CviKI_1	RGCY	9 cut(s)	19, 199, 415, 470, 489, 501, 633, 691, 804
CviQI	GTAC	4 cut(s)	157, 251, 637, 650
DdeI	CTNAG	2 cut(s)	422, 532
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	544, 731
Eco32I	GATATC	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	728, 795
Eco57I	CTGAAG	2 cut(s)	207, 691
EcoRII	CCWGG	2 cut(s)	111, 489
EcoRV	GATATC	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	544, 731
ErhI	CCWWGG	2 cut(s)	544, 731
FaeI	CATG	2 cut(s)	519, 819
FatI	CATG	2 cut(s)	515, 815
FblI	GTMKAC	1 cut(s)	659
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	2 cut(s)	463, 548
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	4 cut(s)	60, 75, 200, 311
GlaI	GCGC	2 cut(s)	281, 555
GluI	GCNGC	1 cut(s)	79
GsaI	CCCAGC	1 cut(s)	560
HaeIII	GGCC	1 cut(s)	19
HhaI	GCGC	2 cut(s)	282, 556
Hin1II	CATG	2 cut(s)	519, 819
Hin6I	GCGC	2 cut(s)	280, 554
HinP1I	GCGC	2 cut(s)	280, 554
HinfI	GANTC	2 cut(s)	117, 521
Hpy166II	GTNNAC	4 cut(s)	50, 598, 660, 798
Hpy188I	TCNGA	2 cut(s)	369, 384
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	4 cut(s)	50, 598, 660, 798
HpyAV	CCTTC	4 cut(s)	104, 255, 306, 841
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	662
HpyCH4V	TGCA	2 cut(s)	167, 445
HpyF3I	CTNAG	2 cut(s)	422, 532
HpySE526I	ACGT	1 cut(s)	662
Hsp92II	CATG	2 cut(s)	519, 819
HspAI	GCGC	2 cut(s)	280, 554
LguI	GCTCTTC	1 cut(s)	266
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	2 cut(s)	521, 570
MaeI	CTAG	4 cut(s)	60, 75, 200, 311
MaeII	ACGT	1 cut(s)	662
MaeIII	GTNAC	2 cut(s)	391, 763
MboII	GAAGA	5 cut(s)	283, 438, 628, 631, 688
MfeI	CAATTG	2 cut(s)	456, 653
MluCI	AATT	7 cut(s)	26, 387, 456, 653, 672, 853, 907
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	1 cut(s)	9
MroXI	GAANNNNTTC	1 cut(s)	433
MseI	TTAA	2 cut(s)	495, 785
MslI	CAYNNNNRTG	1 cut(s)	321
MspR9I	CCNGG	2 cut(s)	113, 491
MunI	CAATTG	2 cut(s)	456, 653
MvaI	CCWGG	2 cut(s)	113, 491
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	519, 819
NlaIV	GGNNCC	1 cut(s)	796
PaqCI	CACCTGC	1 cut(s)	581
PciSI	GCTCTTC	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	2 cut(s)	117, 521
PkrI	GCNGC	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	111, 489
PspFI	CCCAGC	1 cut(s)	556
PspGI	CCWGG	2 cut(s)	111, 489
PspN4I	GGNNCC	1 cut(s)	796
PspPI	GGNCC	2 cut(s)	728, 795
RsaI	GTAC	4 cut(s)	158, 252, 638, 651
RsaNI	GTAC	4 cut(s)	157, 251, 637, 650
RseI	CAYNNNNRTG	1 cut(s)	321
SapI	GCTCTTC	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	495, 785
SatI	GCNGC	1 cut(s)	79
Sau96I	GGNCC	2 cut(s)	728, 795
ScrFI	CCNGG	2 cut(s)	113, 491
SetI	ASST	7 cut(s)	201, 472, 495, 595, 665, 733, 852
SfaNI	GCATC	2 cut(s)	521, 570
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	2 cut(s)	728, 795
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	7 cut(s)	26, 387, 456, 653, 672, 853, 907
SspI	AATATT	2 cut(s)	86, 841
SspMI	CTAG	4 cut(s)	60, 75, 200, 311
StyD4I	CCNGG	2 cut(s)	111, 489
StyI	CCWWGG	2 cut(s)	544, 731
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	665
TaqI	TCGA	1 cut(s)	699
TasI	AATT	7 cut(s)	26, 387, 456, 653, 672, 853, 907
TatI	WGTACW	2 cut(s)	636, 649
TfiI	GAWTC	2 cut(s)	117, 521
Tru1I	TTAA	2 cut(s)	495, 785
Tru9I	TTAA	2 cut(s)	495, 785
TscAI	CASTG	1 cut(s)	805
TseI	GCWGC	1 cut(s)	78
TspDTI	ATGAA	7 cut(s)	78, 86, 305, 629, 804, 839, 900
TspGWI	ACGGA	2 cut(s)	165, 757
TspRI	CASTG	1 cut(s)	805
VpaK11BI	GGWCC	2 cut(s)	728, 795
XapI	RAATTY	2 cut(s)	853, 907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	659
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	4 cut(s)	60, 75, 200, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.