Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015122

Physical Location & Seq

Genomic Coordinates Reverse (-)

23760762 .. 23764689

Gene Structure 3928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1101100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCAGTGGTACTTCGTTGCCGCGCTGCTTACCGTCCTCACCAGCTCTCAGGGAATCTTGACAACTCTTTCTCAAAGCAATGGCAAATATAAGTATGACTATGCAACTGTTCCGTTTCTTGCTGAAGTATTCAAGCTTATAGTTTCCTGTTTACTTCTTTGGAGAGAGTGTCGCATATCACCCTCAGTACGAATGACTACAGATTGGAAGAGTGTGCGCTTGTATCCTATTCCTTCAGTCATATATCTAATTCATAACAATGTTCAGTTTGCCACTCTTGTTTATGTGGATACGTCCACATATCAGATATTGGGTAACCTGAAGATTGTTACTACTGGAATATTGTTCAGGCTATTCCTGAGAAAGAAGTTGTCAAATATTCAATGGATAGCAATTGTTTTATTAGCTGTTGGAACAACCACAAGCCAGGTTAAAGGTTGTGGAGAAGCGTCATGTGATTCTTTGTTCTCAGCACCAATCCAAGGATATATGCTTGGCATTCTATCTGCTTGTATGTCAGCATTAGCAGGTGTTTACACAGAGTTTCTCATGAAGAAGAACAATGATAGTTTGTACTGGCAGAATGTACAATTGTATACGTTTGGTGTGATTTTCAACATAGCACGGCTTCTCTTCGATGATTTCAGGGGTGGATTTGAGAATGGACCTTGGTGGCAACGCCTTTTCAATGGATATAGTCTTACAACTTGGTTGGTCGTGCTAAATCTTGGATCTACTGGCTTGCTTGTTTCATGGTTGATGAAGTATGCTGACAACATAGTGAAGGTGTATTCCACCTCAATGGCAATGCTGCTGACAATGGTTTTGTCAGTATACCTTTTCACTTTCAAGCCCACATTACAGCTTTTCTTGGGCATTATTATCTGTATGATGTCACTACACATGTACTTTGCCCCTCCGAACATGCTGGTAGACTTACCCTTACCTGTAAAATCAACCACTGAGAGTCTGAAAGAAGTTTCAGTTGAACGAAAATCAGATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

336

Amino Acids

37.92

Weight (kDa)

9.1

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	4 - 303	2.2e-55	Nucleotide-sugar transporter
UAA	PF08449	13 - 304	2e-06	UAA transporter family
EamA	PF00892	16 - 139	9.4e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41760 AT5G41760
fragaria_vesca	FvH4_5g03970
malus_domestica	MD06G1101100.v1.1 MD14G1120800.v1.1
prunus_persica	Prupe.5G114600_v2.0.a1
pyrus_communis	pycom06g09620
rosa_chinensis	RchiOBHm_Chr7g0195531
rosa_laevigata	RLG00000004112
rosa_multiflora	Rmu_co8492915.1_g000001 Rmu_ssc0000078.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260390
rosa_rugosa	Rorug07G0023900
rosa_samantha	Rh7CG156800 Rh7DG152600
rosa_wichuraiana	Rw7G012950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	518
Acc36I	ACCTGC	1 cut(s)	518
AccI	GTMKAC	3 cut(s)	596, 834, 933
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	739
AcuI	CTGAAG	3 cut(s)	144, 219, 341
AfaI	GTAC	5 cut(s)	11, 189, 575, 588, 908
AfiI	CCNNNNNNNGG	1 cut(s)	482
AflIII	ACRYGT	1 cut(s)	903
AgsI	TTSAA	6 cut(s)	133, 383, 616, 688, 850, 989
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	4 cut(s)	45, 136, 407, 865
AluI	AGCT	4 cut(s)	45, 136, 407, 865
AlwI	GGATC	1 cut(s)	739
ApeKI	GCWGC	2 cut(s)	25, 811
ArsI	GACNNNNNNTTYG	2 cut(s)	808, 840
AspLEI	GCGC	2 cut(s)	25, 219
AspS9I	GGNCC	1 cut(s)	665
AsuHPI	GGTGA	2 cut(s)	31, 171
AvaII	GGWCC	1 cut(s)	665
BbvI	GCAGC	2 cut(s)	12, 798
BceAI	ACGGC	1 cut(s)	641
BciT130I	CCWGG	1 cut(s)	428
BciVI	GTATCC	2 cut(s)	234, 283
BfmI	CTRYAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	518
BfuI	GTATCC	2 cut(s)	234, 283
BisI	GCNGC	3 cut(s)	21, 26, 812
BlsI	GCNGC	3 cut(s)	22, 27, 813
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	665
BmrFI	CCNGG	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	481, 668
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse1I	ACTGG	3 cut(s)	340, 581, 742
Bse3DI	GCAATG	2 cut(s)	85, 813
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	2 cut(s)	481, 668
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMI	GCAATG	2 cut(s)	85, 813
BseMII	CTCAG	5 cut(s)	62, 198, 350, 483, 954
BseNI	ACTGG	3 cut(s)	340, 581, 742
BseXI	GCAGC	2 cut(s)	12, 798
Bsh1236I	CGCG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmI	GAATGC	1 cut(s)	498
Bsp1407I	TGTACA	1 cut(s)	586
Bsp143I	GATC	1 cut(s)	731
BspACI	CCGC	1 cut(s)	21
BspCNI	CTCAG	5 cut(s)	61, 197, 351, 482, 955
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	549
BspMI	ACCTGC	1 cut(s)	518
BspPI	GGATC	1 cut(s)	739
BsrDI	GCAATG	2 cut(s)	85, 813
BsrGI	TGTACA	1 cut(s)	586
BsrI	ACTGG	3 cut(s)	340, 581, 742
BssECI	CCNNGG	2 cut(s)	481, 668
BssMI	GATC	1 cut(s)	731
BssNAI	GTATAC	2 cut(s)	597, 835
BssT1I	CCWWGG	2 cut(s)	481, 668
Bst1107I	GTATAC	2 cut(s)	597, 835
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	2 cut(s)	34, 109
Bst6I	CTCTTC	2 cut(s)	203, 638
BstAUI	TGTACA	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	743
BstDEI	CTNAG	5 cut(s)	48, 184, 359, 469, 963
BstEII	GGTNACC	1 cut(s)	314
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	25, 219
BstKTI	GATC	1 cut(s)	734
BstMBI	GATC	1 cut(s)	731
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	2 cut(s)	907, 928
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	12, 798
BstX2I	RGATCY	1 cut(s)	731
BstXI	CCANNNNNNTGG	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	731
BstZ17I	GTATAC	2 cut(s)	597, 835
BsuI	GTATCC	2 cut(s)	234, 283
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	11, 960
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	1 cut(s)	743
CciI	TCATGA	1 cut(s)	549
CfoI	GCGC	2 cut(s)	25, 219
Cfr13I	GGNCC	1 cut(s)	665
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	5 cut(s)	10, 188, 574, 587, 907
CviAII	CATG	5 cut(s)	453, 550, 753, 904, 925
CviJI	RGCY	9 cut(s)	45, 136, 352, 407, 426, 628, 741, 853, 865
CviKI_1	RGCY	9 cut(s)	45, 136, 352, 407, 426, 628, 741, 853, 865
CviQI	GTAC	5 cut(s)	10, 188, 574, 587, 907
DdeI	CTNAG	5 cut(s)	48, 184, 359, 469, 963
DpnI	GATC	1 cut(s)	733
DpnII	GATC	1 cut(s)	731
Eam1104I	CTCTTC	2 cut(s)	203, 638
EarI	CTCTTC	2 cut(s)	203, 638
Eco130I	CCWWGG	2 cut(s)	481, 668
Eco47I	GGWCC	1 cut(s)	665
Eco57I	CTGAAG	3 cut(s)	144, 219, 341
Eco91I	GGTNACC	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	2 cut(s)	481, 668
ErhI	CCWWGG	2 cut(s)	481, 668
FaeI	CATG	5 cut(s)	456, 553, 756, 907, 928
FatI	CATG	5 cut(s)	452, 549, 752, 903, 924
FblI	GTMKAC	3 cut(s)	596, 834, 933
Fnu4HI	GCNGC	3 cut(s)	21, 26, 812
Fsp4HI	GCNGC	3 cut(s)	21, 26, 812
GlaI	GCGC	2 cut(s)	24, 218
GluI	GCNGC	3 cut(s)	21, 26, 812
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	2 cut(s)	25, 219
Hin1II	CATG	5 cut(s)	456, 553, 756, 907, 928
Hin6I	GCGC	2 cut(s)	23, 217
HinP1I	GCGC	2 cut(s)	23, 217
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	4 cut(s)	54, 458, 967, 1001
HphI	GGTGA	2 cut(s)	31, 171
Hpy166II	GTNNAC	6 cut(s)	152, 297, 535, 597, 835, 934
Hpy188I	TCNGA	4 cut(s)	306, 921, 972, 1000
Hpy188III	TCNNGA	4 cut(s)	58, 358, 550, 1005
Hpy8I	GTNNAC	6 cut(s)	152, 297, 535, 597, 835, 934
HpyAV	CCTTC	2 cut(s)	243, 778
HpyCH4III	ACNGT	2 cut(s)	34, 109
HpyCH4IV	ACGT	2 cut(s)	293, 599
HpyCH4V	TGCA	2 cut(s)	4, 104
HpyF3I	CTNAG	5 cut(s)	48, 184, 359, 469, 963
HpySE526I	ACGT	2 cut(s)	293, 599
Hsp92II	CATG	5 cut(s)	456, 553, 756, 907, 928
HspAI	GCGC	2 cut(s)	23, 217
Kzo9I	GATC	1 cut(s)	731
Lsp1109I	GCAGC	2 cut(s)	12, 798
MaeII	ACGT	2 cut(s)	293, 599
MaeIII	GTNAC	3 cut(s)	314, 328, 894
MalI	GATC	1 cut(s)	733
MboI	GATC	1 cut(s)	731
MboII	GAAGA	5 cut(s)	220, 334, 565, 568, 625
MfeI	CAATTG	2 cut(s)	393, 590
MflI	RGATCY	1 cut(s)	731
MluCI	AATT	3 cut(s)	249, 393, 590
MlyI	GAGTC	1 cut(s)	976
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	4 cut(s)	47, 193, 808, 927
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	2 cut(s)	258, 800
MspR9I	CCNGG	1 cut(s)	428
MunI	CAATTG	2 cut(s)	393, 590
Mva1269I	GAATGC	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	23
NdeII	GATC	1 cut(s)	731
NlaIII	CATG	5 cut(s)	456, 553, 756, 907, 928
NmuCI	GTSAC	1 cut(s)	894
NspI	RCATGY	2 cut(s)	907, 928
PagI	TCATGA	1 cut(s)	549
PaqCI	CACCTGC	1 cut(s)	518
PciI	ACATGT	1 cut(s)	903
PctI	GAATGC	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	54, 458, 1001
PkrI	GCNGC	3 cut(s)	22, 27, 813
PleI	GAGTC	1 cut(s)	975
PpsI	GAGTC	1 cut(s)	975
PscI	ACATGT	1 cut(s)	903
Psp6I	CCWGG	1 cut(s)	426
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	731
RsaI	GTAC	5 cut(s)	11, 189, 575, 588, 908
RsaNI	GTAC	5 cut(s)	10, 188, 574, 587, 907
RseI	CAYNNNNRTG	2 cut(s)	258, 800
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	3 cut(s)	21, 26, 812
Sau3AI	GATC	1 cut(s)	731
Sau96I	GGNCC	1 cut(s)	665
SchI	GAGTC	1 cut(s)	976
ScrFI	CCNGG	1 cut(s)	428
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	2 cut(s)	258, 800
Sse9I	AATT	3 cut(s)	249, 393, 590
SsiI	CCGC	1 cut(s)	21
SspI	AATATT	2 cut(s)	342, 379
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	2 cut(s)	481, 668
TaaI	ACNGT	2 cut(s)	34, 109
TaiI	ACGT	2 cut(s)	296, 602
TaqI	TCGA	1 cut(s)	636
TasI	AATT	3 cut(s)	249, 393, 590
TatI	WGTACW	3 cut(s)	573, 586, 906
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	3 cut(s)	54, 458, 1001
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	1 cut(s)	967
TseFI	GTSAC	1 cut(s)	894
TseI	GCWGC	2 cut(s)	25, 811
Tsp45I	GTSAC	1 cut(s)	894
TspDTI	ATGAA	4 cut(s)	242, 566, 741, 776
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	967
VpaK11BI	GGWCC	1 cut(s)	665
XceI	RCATGY	2 cut(s)	907, 928
XmiI	GTMKAC	3 cut(s)	596, 834, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.