Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015122

Physical Location & Seq

Genomic Coordinates Reverse (-)

11755403 .. 11759771

Gene Structure 4369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G114600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCAGTGGTACTTTGTTGCCGCGCTGCTCACCGTCCTCACCAGCTCTCAGGGAATCTTGACAACCCTTTCTCAAAGCAACGGAAAATATAAGTATGACTATGCAACTGTTCCGTTTCTTGCTGAAGTATTCAAGCTAGCAGTATCCAGTTTACTTCTTTGGAGAGAGTGTCGGATATCACCTTCTGTACGAATGACGACAGATTGGAAGAGTGTGCGCTTATATCCTATTCCTTCAATCATATATCTAATTCATAACAATGTTCAGTTTGCCACTCTTGTTTATGTGGATACTTCCACATATCAGATAATGGGTAATCTGAAGATTGTTACTACTGGCATATTGTTCAGGCTATTCCTGAGAAGAAAGCTGTCTAATCTGCAATGGATAGCAATTGTTTTATTAGCTGTTGGAACAACCACAAGCCAGGTTAAAGGTTGTGGAGAAGCGTCGTGTGATTCTATGTTCTCAGCACCAATCCAAGGATATATGCTGGGTATCCTATCCGCTTGTATGTCAGCATTAGCAGGTGTTTACACAGAGTTTCTGATGAAGAAGAACAATGATAGCTTGTACTGGCAGAATGTACAATTGTATACGTTTGGTGTGATTTTCAACATAGCACGGCTTCTCTTCGATGATTTCAGGGGTGGATTTGAGAATGGACCTTGGTGGCAACGCCTTTTCAATGGATATAATCTTACAACTTGGTTGGTAGTGTTAAATCTTGGATCTACTGGCTTACTTGTTTCATGGTTGATGAAGTATGCTGACAATATTGTGAAGGTGTATTCCACCTCAATGGCAATGCTGCTGACAATGGTTTTATCTGTGTACCTTTTCACTTTCAAGCCCACATTACAGCTTTTCTTGGGTATTATTATCTGTATGATGTCACTACACATGTATTTTGCCCCTCCGAACATGCTGATAGACTTACCATTACCTGTAAAAGCAACCACTGAGAGTCTGAAAGAAGTTTCTGTTGAACGAAAATCAGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

336

Amino Acids

37.96

Weight (kDa)

9.16

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41760 AT5G41760
fragaria_vesca	FvH4_5g03970
malus_domestica	MD06G1101100.v1.1 MD14G1120800.v1.1
prunus_persica	Prupe.5G114600_v2.0.a1
pyrus_communis	pycom06g09620
rosa_chinensis	RchiOBHm_Chr7g0195531
rosa_laevigata	RLG00000004112
rosa_multiflora	Rmu_co8492915.1_g000001 Rmu_ssc0000078.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260390
rosa_rugosa	Rorug07G0023900
rosa_samantha	Rh7CG156800 Rh7DG152600
rosa_wichuraiana	Rw7G012950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	518
Acc36I	ACCTGC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	596
AccII	CGCG	1 cut(s)	23
AciI	CCGC	2 cut(s)	21, 507
AclWI	GGATC	1 cut(s)	739
AcuI	CTGAAG	2 cut(s)	144, 341
AfaI	GTAC	5 cut(s)	11, 189, 575, 588, 836
AfiI	CCNNNNNNNGG	1 cut(s)	482
AflIII	ACRYGT	1 cut(s)	903
AgsI	TTSAA	6 cut(s)	133, 237, 616, 688, 850, 989
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	6 cut(s)	45, 136, 370, 407, 570, 865
AluI	AGCT	6 cut(s)	45, 136, 370, 407, 570, 865
AlwI	GGATC	1 cut(s)	739
ApeKI	GCWGC	2 cut(s)	25, 811
AspLEI	GCGC	2 cut(s)	25, 219
AspS9I	GGNCC	1 cut(s)	665
AsuHPI	GGTGA	3 cut(s)	22, 31, 171
AsuNHI	GCTAGC	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	665
BbvI	GCAGC	2 cut(s)	12, 798
BceAI	ACGGC	1 cut(s)	641
BciT130I	CCWGG	1 cut(s)	428
BciVI	GTATCC	3 cut(s)	154, 283, 509
BfaI	CTAG	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	518
BfuI	GTATCC	3 cut(s)	154, 283, 509
BisI	GCNGC	3 cut(s)	21, 26, 812
BlsI	GCNGC	3 cut(s)	22, 27, 813
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	665
BmrFI	CCNGG	1 cut(s)	428
BmtI	GCTAGC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	481, 668
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse1I	ACTGG	4 cut(s)	147, 340, 581, 742
Bse3DI	GCAATG	2 cut(s)	389, 813
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	2 cut(s)	481, 668
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMI	GCAATG	2 cut(s)	389, 813
BseMII	CTCAG	4 cut(s)	62, 350, 483, 954
BseNI	ACTGG	4 cut(s)	147, 340, 581, 742
BseXI	GCAGC	2 cut(s)	12, 798
BseYI	CCCAGC	1 cut(s)	493
Bsh1236I	CGCG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	482
Bsp1407I	TGTACA	1 cut(s)	586
Bsp143I	GATC	1 cut(s)	731
BspACI	CCGC	2 cut(s)	21, 507
BspCNI	CTCAG	4 cut(s)	61, 351, 482, 955
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	1004
BspMI	ACCTGC	1 cut(s)	518
BspOI	GCTAGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	739
BsrDI	GCAATG	2 cut(s)	389, 813
BsrGI	TGTACA	1 cut(s)	586
BsrI	ACTGG	4 cut(s)	147, 340, 581, 742
BssECI	CCNNGG	2 cut(s)	481, 668
BssMI	GATC	1 cut(s)	731
BssNAI	GTATAC	1 cut(s)	597
BssT1I	CCWWGG	2 cut(s)	481, 668
Bst1107I	GTATAC	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	2 cut(s)	34, 109
Bst6I	CTCTTC	2 cut(s)	203, 638
BstAUI	TGTACA	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	4 cut(s)	48, 359, 469, 963
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	25, 219
BstKTI	GATC	1 cut(s)	734
BstMBI	GATC	1 cut(s)	731
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	2 cut(s)	907, 928
BstSCI	CCNGG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	12, 798
BstX2I	RGATCY	1 cut(s)	731
BstXI	CCANNNNNNTGG	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	731
BstZ17I	GTATAC	1 cut(s)	597
BsuI	GTATCC	3 cut(s)	154, 283, 509
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	11, 960
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	1 cut(s)	138
CciI	TCATGA	1 cut(s)	1004
CfoI	GCGC	2 cut(s)	25, 219
Cfr13I	GGNCC	1 cut(s)	665
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	5 cut(s)	10, 188, 574, 587, 835
CviAII	CATG	4 cut(s)	753, 904, 925, 1005
CviQI	GTAC	5 cut(s)	10, 188, 574, 587, 835
DdeI	CTNAG	4 cut(s)	48, 359, 469, 963
DpnI	GATC	1 cut(s)	733
DpnII	GATC	1 cut(s)	731
Eam1104I	CTCTTC	2 cut(s)	203, 638
EarI	CTCTTC	2 cut(s)	203, 638
Eco130I	CCWWGG	2 cut(s)	481, 668
Eco32I	GATATC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	665
Eco57I	CTGAAG	2 cut(s)	144, 341
EcoRII	CCWGG	1 cut(s)	426
EcoRV	GATATC	1 cut(s)	177
EcoT14I	CCWWGG	2 cut(s)	481, 668
ErhI	CCWWGG	2 cut(s)	481, 668
FaeI	CATG	4 cut(s)	756, 907, 928, 1008
FatI	CATG	4 cut(s)	752, 903, 924, 1004
FblI	GTMKAC	1 cut(s)	596
Fnu4HI	GCNGC	3 cut(s)	21, 26, 812
Fsp4HI	GCNGC	3 cut(s)	21, 26, 812
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	2 cut(s)	24, 218
GluI	GCNGC	3 cut(s)	21, 26, 812
GsaI	CCCAGC	1 cut(s)	497
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	2 cut(s)	25, 219
Hin1II	CATG	4 cut(s)	756, 907, 928, 1008
Hin6I	GCGC	2 cut(s)	23, 217
HinP1I	GCGC	2 cut(s)	23, 217
HinfI	GANTC	4 cut(s)	54, 458, 967, 1001
HphI	GGTGA	3 cut(s)	22, 31, 171
Hpy166II	GTNNAC	4 cut(s)	152, 535, 597, 835
Hpy188I	TCNGA	7 cut(s)	174, 306, 321, 549, 921, 972, 1000
Hpy188III	TCNNGA	3 cut(s)	58, 358, 1005
Hpy8I	GTNNAC	4 cut(s)	152, 535, 597, 835
Hpy99I	CGWCG	1 cut(s)	454
HpyAV	CCTTC	3 cut(s)	192, 243, 778
HpyCH4III	ACNGT	2 cut(s)	34, 109
HpyCH4IV	ACGT	1 cut(s)	599
HpyCH4V	TGCA	3 cut(s)	4, 104, 382
HpyF3I	CTNAG	4 cut(s)	48, 359, 469, 963
HpySE526I	ACGT	1 cut(s)	599
Hsp92II	CATG	4 cut(s)	756, 907, 928, 1008
HspAI	GCGC	2 cut(s)	23, 217
Kzo9I	GATC	1 cut(s)	731
Lsp1109I	GCAGC	2 cut(s)	12, 798
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	599
MaeIII	GTNAC	2 cut(s)	328, 894
MalI	GATC	1 cut(s)	733
MboI	GATC	1 cut(s)	731
MboII	GAAGA	6 cut(s)	220, 334, 375, 565, 568, 625
MfeI	CAATTG	2 cut(s)	393, 590
MflI	RGATCY	1 cut(s)	731
MluCI	AATT	3 cut(s)	249, 393, 590
MlyI	GAGTC	1 cut(s)	976
MmeI	TCCRAC	2 cut(s)	152, 391
MnlI	CCTC	3 cut(s)	47, 808, 927
MseI	TTAA	2 cut(s)	432, 722
MslI	CAYNNNNRTG	2 cut(s)	258, 800
MspR9I	CCNGG	1 cut(s)	428
MunI	CAATTG	2 cut(s)	393, 590
MvaI	CCWGG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	23
NdeII	GATC	1 cut(s)	731
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	4 cut(s)	756, 907, 928, 1008
NmuCI	GTSAC	1 cut(s)	894
NspI	RCATGY	2 cut(s)	907, 928
PagI	TCATGA	1 cut(s)	1004
PaqCI	CACCTGC	1 cut(s)	518
PciI	ACATGT	1 cut(s)	903
PfeI	GAWTC	3 cut(s)	54, 458, 1001
PkrI	GCNGC	3 cut(s)	22, 27, 813
PleI	GAGTC	1 cut(s)	975
PpsI	GAGTC	1 cut(s)	975
PscI	ACATGT	1 cut(s)	903
Psp6I	CCWGG	1 cut(s)	426
PspFI	CCCAGC	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	731
RsaI	GTAC	5 cut(s)	11, 189, 575, 588, 836
RsaNI	GTAC	5 cut(s)	10, 188, 574, 587, 835
RseI	CAYNNNNRTG	2 cut(s)	258, 800
SaqAI	TTAA	2 cut(s)	432, 722
SatI	GCNGC	3 cut(s)	21, 26, 812
Sau3AI	GATC	1 cut(s)	731
Sau96I	GGNCC	1 cut(s)	665
SchI	GAGTC	1 cut(s)	976
ScrFI	CCNGG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	2 cut(s)	258, 800
Sse9I	AATT	3 cut(s)	249, 393, 590
SsiI	CCGC	2 cut(s)	21, 507
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	2 cut(s)	481, 668
TaaI	ACNGT	2 cut(s)	34, 109
TaiI	ACGT	1 cut(s)	602
TaqI	TCGA	1 cut(s)	636
TasI	AATT	3 cut(s)	249, 393, 590
TatI	WGTACW	2 cut(s)	573, 586
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	3 cut(s)	54, 458, 1001
Tru1I	TTAA	2 cut(s)	432, 722
Tru9I	TTAA	2 cut(s)	432, 722
TscAI	CASTG	1 cut(s)	967
TseFI	GTSAC	1 cut(s)	894
TseI	GCWGC	2 cut(s)	25, 811
Tsp45I	GTSAC	1 cut(s)	894
TspDTI	ATGAA	5 cut(s)	242, 566, 741, 776, 993
TspGWI	ACGGA	2 cut(s)	96, 102
TspRI	CASTG	1 cut(s)	967
VpaK11BI	GGWCC	1 cut(s)	665
XceI	RCATGY	2 cut(s)	907, 928
XmiI	GTMKAC	1 cut(s)	596
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.