MD14G1120800.v1.1

Cmp-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0015122
Physical Location & Seq
Reverse (-)
19537374 .. 19542471
5098 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1120800.v1.1.491

Sequence Viewer

Length: 1008 bp
ATGCAGTGGTATTTCGTTGCCGCGCTGCTCACCGTGCTCACCAGCTCTCAGGGAATCTTAACAACGCTCTCTCAAAGCAATGGCAAATATGAGTATGACTATGCAACTGTTCCGTTTCTTGCTGAAGTATTCAAGCTAATAGTTTCCAGTTTTCTTCTTTGGAGAGAGTGTCGCATATCACCTTCCATACGAATGACTACAGATTGGAGGAGTGTGCGCTTATATCCTATTCCTTCAGTCATATATCTAATTCATAACAATGTTCAGTTTGCCACTCTTGTTTATGTGGATACTTCCACATATCAGATATTGGGTAATCTGAAGATTGTTACTACTGGAATATTGTTCAGGCTATTCCTGAGAAAGAAGTTGTCTAATCTGCAATGGATAGCAATTGTTTTGTTAGCTGTTGGAACAACCACGAGCCAGGTTAAAGGTTGTGGAGAAGTGTCATGTGATTCTTTGTTCTCAGCACCAATCCAAGGATATATGCTTGGCATCCTATCTGCTTGTATGTCAGCATTAGCAGGTGTTTATACAGAGTTTCTCATGAAGAAGAACAATGATAGCTTGTACTGGCAGAATGTACAATTGTACACGTTTGGTGTGATTTTCAACGTAGCACGGCTTGGCTTCGATGACTTCAGGGGTGAATTTGAGAATGGCCCTTGGTGGCAACGCCTTTTCAATGGATACAGTCTTACAACTTGGTTGGTCGTGCTAAATCTTGGATCTACCGGACTGCTTGTTTCATGGTTGATGAAGTATGCTGACAACATAGTGAAGGTGTATTCCACCTCAATGGCAATGCTGCTGACAATGGTTCTATCAGTATACCTTTTCACTTTTAAGCCCACACTGCAGCTTTTCTTGGGTATTATTATCTGTATGATGTCACTGCACATGTACTTTGCTCCTCCAAACATGCTCATAGACTTACCATTGCCTGTAAAAGCAACCACCGAAAGTCTGAAGGAAGTTTCAGTCCAACAAAAATCAGATTCGTGA

Protein Analysis

336

Amino Acids

37.98

Weight (kDa)

8.83

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 4 - 303 7.9e-55 Nucleotide-sugar transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41760 AT5G41760
fragaria_vesca FvH4_5g03970
malus_domestica MD06G1101100.v1.1 MD14G1120800.v1.1
prunus_persica Prupe.5G114600_v2.0.a1
pyrus_communis pycom06g09620
rosa_chinensis RchiOBHm_Chr7g0195531
rosa_laevigata RLG00000004112
rosa_multiflora Rmu_co8492915.1_g000001 Rmu_ssc0000078.1_g000003
rosa_roxburghii Rroxscaffold_3G00260390
rosa_rugosa Rorug07G0023900
rosa_samantha Rh7CG156800 Rh7DG152600
rosa_wichuraiana Rw7G012950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 518
AccI GTMKAC 1 cut(s) 834
AccII CGCG 1 cut(s) 23
AciI CCGC 1 cut(s) 21
AclWI GGATC 1 cut(s) 739
AcsI RAATTY 1 cut(s) 653
AcuI CTGAAG 5 cut(s) 144, 219, 341, 628, 992
AfaI GTAC 4 cut(s) 575, 588, 596, 908
AfiI CCNNNNNNNGG 1 cut(s) 482
AflIII ACRYGT 2 cut(s) 597, 903
AgsI TTSAA 3 cut(s) 133, 616, 688
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 5 cut(s) 45, 136, 407, 570, 865
AluI AGCT 5 cut(s) 45, 136, 407, 570, 865
Alw21I GWGCWC 1 cut(s) 39
AlwI GGATC 1 cut(s) 739
AoxI GGCC 1 cut(s) 664
ApeKI GCWGC 3 cut(s) 25, 811, 862
ApoI RAATTY 1 cut(s) 653
AspLEI GCGC 2 cut(s) 25, 219
AspS9I GGNCC 1 cut(s) 665
AsuHPI GGTGA 4 cut(s) 22, 31, 171, 662
BauI CACGAG 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 12, 798, 874
BceAI ACGGC 1 cut(s) 641
BciT130I CCWGG 1 cut(s) 428
BciVI GTATCC 2 cut(s) 283, 686
BfmI CTRYAG 2 cut(s) 198, 860
BfuAI ACCTGC 1 cut(s) 518
BfuI GTATCC 2 cut(s) 283, 686
BisI GCNGC 4 cut(s) 21, 26, 812, 863
BlsI GCNGC 4 cut(s) 22, 27, 813, 864
Bme1390I CCNGG 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 665
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 507
BsaJI CCNNGG 2 cut(s) 481, 668
BsaWI WCCGGW 1 cut(s) 737
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse1I ACTGG 3 cut(s) 147, 340, 581
Bse3DI GCAATG 4 cut(s) 85, 389, 813, 941
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 481, 668
BseGI GGATG 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMI GCAATG 4 cut(s) 85, 389, 813, 941
BseMII CTCAG 3 cut(s) 62, 350, 483
BseNI ACTGG 3 cut(s) 147, 340, 581
BseRI GAGGAG 2 cut(s) 223, 906
BseXI GCAGC 3 cut(s) 12, 798, 874
BsgI GTGCAG 1 cut(s) 884
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 666
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 738
BslI CCNNNNNNNGG 1 cut(s) 482
BsnI GGCC 1 cut(s) 666
Bsp1286I GDGCHC 1 cut(s) 39
Bsp1407I TGTACA 2 cut(s) 586, 594
Bsp143I GATC 1 cut(s) 731
BspACI CCGC 1 cut(s) 21
BspANI GGCC 1 cut(s) 666
BspCNI CTCAG 3 cut(s) 61, 351, 482
BspFNI CGCG 1 cut(s) 23
BspHI TCATGA 1 cut(s) 549
BspMAI CTGCAG 1 cut(s) 864
BspMI ACCTGC 1 cut(s) 518
BspPI GGATC 1 cut(s) 739
BsrDI GCAATG 4 cut(s) 85, 389, 813, 941
BsrGI TGTACA 2 cut(s) 586, 594
BsrI ACTGG 3 cut(s) 147, 340, 581
BssECI CCNNGG 2 cut(s) 481, 668
BssMI GATC 1 cut(s) 731
BssNAI GTATAC 1 cut(s) 835
BssSI CACGAG 1 cut(s) 421
BssT1I CCWWGG 2 cut(s) 481, 668
Bst1107I GTATAC 1 cut(s) 835
Bst2BI CACGAG 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 34, 109, 698
BstAUI TGTACA 2 cut(s) 586, 594
BstDEI CTNAG 3 cut(s) 48, 359, 469
BstF5I GGATG 1 cut(s) 498
BstFNI CGCG 1 cut(s) 23
BstHHI GCGC 2 cut(s) 25, 219
BstKTI GATC 1 cut(s) 734
BstMBI GATC 1 cut(s) 731
BstMWI GCNNNNNNNGC 2 cut(s) 34, 859
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 2 cut(s) 907, 928
BstSCI CCNGG 1 cut(s) 426
BstSFI CTRYAG 2 cut(s) 198, 860
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 3 cut(s) 12, 798, 874
BstX2I RGATCY 1 cut(s) 731
BstXI CCANNNNNNTGG 1 cut(s) 802
BstYI RGATCY 1 cut(s) 731
BstZ17I GTATAC 1 cut(s) 835
BsuI GTATCC 2 cut(s) 283, 686
BsuRI GGCC 1 cut(s) 666
BtsCI GGATG 1 cut(s) 498
BtsI GCAGTG 3 cut(s) 11, 857, 896
BtsIMutI CAGTG 3 cut(s) 11, 857, 896
BveI ACCTGC 1 cut(s) 518
CciI TCATGA 1 cut(s) 549
CfoI GCGC 2 cut(s) 25, 219
Cfr13I GGNCC 1 cut(s) 665
Csp6I GTAC 4 cut(s) 574, 587, 595, 907
CviAII CATG 5 cut(s) 453, 550, 753, 904, 925
CviQI GTAC 4 cut(s) 574, 587, 595, 907
DdeI CTNAG 3 cut(s) 48, 359, 469
DpnI GATC 1 cut(s) 733
DpnII GATC 1 cut(s) 731
Eco130I CCWWGG 2 cut(s) 481, 668
Eco57I CTGAAG 5 cut(s) 144, 219, 341, 628, 992
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 2 cut(s) 481, 668
ErhI CCWWGG 2 cut(s) 481, 668
FaeI CATG 5 cut(s) 456, 553, 756, 907, 928
FatI CATG 5 cut(s) 452, 549, 752, 903, 924
FblI GTMKAC 1 cut(s) 834
Fnu4HI GCNGC 4 cut(s) 21, 26, 812, 863
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 4 cut(s) 21, 26, 812, 863
GlaI GCGC 2 cut(s) 24, 218
GluI GCNGC 4 cut(s) 21, 26, 812, 863
HaeIII GGCC 1 cut(s) 666
HapII CCGG 1 cut(s) 738
HhaI GCGC 2 cut(s) 25, 219
Hin1II CATG 5 cut(s) 456, 553, 756, 907, 928
Hin6I GCGC 2 cut(s) 23, 217
HinP1I GCGC 2 cut(s) 23, 217
HinfI GANTC 3 cut(s) 54, 458, 1001
HpaII CCGG 1 cut(s) 738
HphI GGTGA 4 cut(s) 22, 31, 171, 662
Hpy166II GTNNAC 2 cut(s) 597, 835
Hpy188I TCNGA 4 cut(s) 306, 321, 972, 1000
Hpy188III TCNNGA 3 cut(s) 358, 550, 1005
Hpy8I GTNNAC 2 cut(s) 597, 835
HpyAV CCTTC 4 cut(s) 192, 243, 778, 967
HpyCH4III ACNGT 3 cut(s) 34, 109, 698
HpyCH4IV ACGT 2 cut(s) 599, 618
HpyCH4V TGCA 5 cut(s) 4, 104, 382, 862, 901
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 859
HpyF3I CTNAG 3 cut(s) 48, 359, 469
HpySE526I ACGT 2 cut(s) 599, 618
Hsp92II CATG 5 cut(s) 456, 553, 756, 907, 928
HspAI GCGC 2 cut(s) 23, 217
Kzo9I GATC 1 cut(s) 731
LmnI GCTCC 1 cut(s) 919
Lsp1109I GCAGC 3 cut(s) 12, 798, 874
LweI GCATC 1 cut(s) 507
MaeII ACGT 2 cut(s) 599, 618
MaeIII GTNAC 2 cut(s) 328, 894
MalI GATC 1 cut(s) 733
MboI GATC 1 cut(s) 731
MboII GAAGA 4 cut(s) 146, 334, 565, 568
MfeI CAATTG 2 cut(s) 393, 590
MflI RGATCY 1 cut(s) 731
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 4 cut(s) 249, 393, 590, 653
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 3 cut(s) 201, 808, 927
MseI TTAA 3 cut(s) 59, 432, 849
MslI CAYNNNNRTG 3 cut(s) 191, 258, 800
MspI CCGG 1 cut(s) 738
MspR9I CCNGG 1 cut(s) 428
MunI CAATTG 2 cut(s) 393, 590
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 34, 859
NdeII GATC 1 cut(s) 731
NlaIII CATG 5 cut(s) 456, 553, 756, 907, 928
NmuCI GTSAC 1 cut(s) 894
NspI RCATGY 2 cut(s) 907, 928
PagI TCATGA 1 cut(s) 549
PaqCI CACCTGC 1 cut(s) 518
PciI ACATGT 1 cut(s) 903
PfeI GAWTC 3 cut(s) 54, 458, 1001
PkrI GCNGC 4 cut(s) 22, 27, 813, 864
PscI ACATGT 1 cut(s) 903
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspPI GGNCC 1 cut(s) 665
PstI CTGCAG 1 cut(s) 864
PsuI RGATCY 1 cut(s) 731
RsaI GTAC 4 cut(s) 575, 588, 596, 908
RsaNI GTAC 4 cut(s) 574, 587, 595, 907
RseI CAYNNNNRTG 3 cut(s) 191, 258, 800
SaqAI TTAA 3 cut(s) 59, 432, 849
SatI GCNGC 4 cut(s) 21, 26, 812, 863
Sau3AI GATC 1 cut(s) 731
Sau96I GGNCC 1 cut(s) 665
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 1 cut(s) 39
SfaNI GCATC 1 cut(s) 507
SfcI CTRYAG 2 cut(s) 198, 860
SmiMI CAYNNNNRTG 3 cut(s) 191, 258, 800
Sse9I AATT 4 cut(s) 249, 393, 590, 653
SsiI CCGC 1 cut(s) 21
SspI AATATT 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 2 cut(s) 481, 668
TaaI ACNGT 3 cut(s) 34, 109, 698
TaiI ACGT 2 cut(s) 602, 621
TaqI TCGA 1 cut(s) 636
TasI AATT 4 cut(s) 249, 393, 590, 653
TatI WGTACW 4 cut(s) 573, 586, 594, 906
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 3 cut(s) 54, 458, 1001
Tru1I TTAA 3 cut(s) 59, 432, 849
Tru9I TTAA 3 cut(s) 59, 432, 849
TscAI CASTG 2 cut(s) 864, 903
TseFI GTSAC 1 cut(s) 894
TseI GCWGC 3 cut(s) 25, 811, 862
Tsp45I GTSAC 1 cut(s) 894
TspDTI ATGAA 4 cut(s) 242, 566, 741, 776
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 2 cut(s) 864, 903
XapI RAATTY 1 cut(s) 653
XceI RCATGY 2 cut(s) 907, 928
XmiI GTMKAC 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.