Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015122

Physical Location & Seq

Genomic Coordinates Reverse (-)

54816006 .. 54820131

Gene Structure 4126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00260390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCAGTGGTACTTTGTTGCCGCGCTTCTCACCGTCCTCACCAGCTCTCAGCAGAGGCCGACAGAATTGGTTTATGAAGTCAGTTGTGAACTGATATCTAGTTTTCAGTCTCCTAGCAGCAAATATTCATTCCTTCATATTGTATTGTGCCAGGGAATCCTGACAACTCTCTCTCAAAGTAATGGCAAATATAAGTACGACTATGCAACTGTTCCGTTTCTTGCTGAAGTATTCAAGCTAGCAGTTTCCTGTGTTTTTCTTTGGAGAGAGTGTCGCACATCTCCTTCTGTACGAATGACTACAGATTGGAAGAGCGTGCGCTTATATCCTATTCCTTCAATCATATATCTAGTTCATAACAATGTTCAGTTTGCTACTCTTGTTTATGTGGATACTTCCACATATCAGATAATGGGTAATCTGAAAATTGTTACCACAGGCATATTATTCAGGCTATTCCTAAGAAGAAAACTTTCTAATCTGCAATGGATGGCAATTGTTTTATTAGCTGTTGGAACGACCACAAGCCAGGTTAAAGGCTGTGGAGAAGCATCATGTGATTCTCTGTTCTCAGCACCAATCCAAGGATATGCGCTGGGCATCCTGTCTGCTTGTATGTCAGCATTAGCAGGTGTTTACACAGAGTTTCTTATGAAGAAGAACAATGATAGCCTGTACTGGCAGAATGTACAATTGTATACGTTTGGTGTAATTTTCAATATGGCACGGCTTGTCTTCGATGACTTCAGGGGTGGATTTGAGAATGGACCTTGGTGGCAACGGATTTTCAATGGATATAGTGTTACGACTTGGTTGGTGGTGTTAAATCTTGGGTCCACTGGCTTGCTGGTTTCATGGTTGATGAAGTATGCTGACAATATTGTGAAGGTGTATTCTACTTCAATGGCAATGCTGCTGACAATGGTTTTATCTGTATACCTTTTCACTTTCAAGCCCACATTGCAGCTCTTTTTGGGTATTATTATCTGTATGATGTCACTACACATGTACTTTGCCCCTCCAAACACGCTGGTAGACATACCATTGCCTGTAAAAGCAACCCCGGAGAGTCTGAAAGAAGTTGCTGTTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

365

Amino Acids

41.24

Weight (kDa)

8.79

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	59 - 337	7e-54	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41760 AT5G41760
fragaria_vesca	FvH4_5g03970
malus_domestica	MD06G1101100.v1.1 MD14G1120800.v1.1
prunus_persica	Prupe.5G114600_v2.0.a1
pyrus_communis	pycom06g09620
rosa_chinensis	RchiOBHm_Chr7g0195531
rosa_laevigata	RLG00000004112
rosa_multiflora	Rmu_co8492915.1_g000001 Rmu_ssc0000078.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260390
rosa_rugosa	Rorug07G0023900
rosa_samantha	Rh7CG156800 Rh7DG152600
rosa_wichuraiana	Rw7G012950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	620
AccI	GTMKAC	3 cut(s)	698, 936, 1035
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	21
AcuI	CTGAAG	2 cut(s)	246, 730
AfaI	GTAC	6 cut(s)	11, 197, 291, 677, 690, 1010
AfiI	CCNNNNNNNGG	1 cut(s)	584
AflIII	ACRYGT	1 cut(s)	1005
AgsI	TTSAA	7 cut(s)	235, 339, 718, 790, 903, 952, 1094
AjnI	CCWGG	2 cut(s)	150, 528
AluBI	AGCT	4 cut(s)	45, 238, 509, 967
AluI	AGCT	4 cut(s)	45, 238, 509, 967
Alw26I	GTCTC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	3 cut(s)	117, 913, 964
Asp700I	GAANNNNTTC	1 cut(s)	472
AspLEI	GCGC	3 cut(s)	25, 321, 595
AspS9I	GGNCC	2 cut(s)	767, 834
AsuC2I	CCSGG	1 cut(s)	1064
AsuHPI	GGTGA	2 cut(s)	22, 31
AsuNHI	GCTAGC	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	767, 834
BbsI	GAAGAC	1 cut(s)	727
BbvI	GCAGC	3 cut(s)	129, 900, 976
BccI	CCATC	1 cut(s)	484
BceAI	ACGGC	1 cut(s)	743
BciT130I	CCWGG	2 cut(s)	152, 530
BciVI	GTATCC	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	1064
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	4 cut(s)	99, 114, 239, 350
BfmI	CTRYAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	620
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	4 cut(s)	21, 118, 914, 965
BlsI	GCNGC	4 cut(s)	22, 119, 915, 966
Bme1390I	CCNGG	3 cut(s)	152, 530, 1064
Bme18I	GGWCC	2 cut(s)	767, 834
BmgT120I	GGNCC	2 cut(s)	767, 834
BmiI	GGNNCC	1 cut(s)	835
BmrFI	CCNGG	3 cut(s)	152, 530, 1064
BmsI	GCATC	2 cut(s)	560, 609
BmtI	GCTAGC	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	727
BpuMI	CCSGG	1 cut(s)	1064
BsaJI	CCNNGG	4 cut(s)	151, 583, 770, 1062
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse1I	ACTGG	2 cut(s)	683, 844
Bse3DI	GCAATG	4 cut(s)	491, 915, 959, 1043
BseBI	CCWGG	2 cut(s)	152, 530
BseDI	CCNNGG	4 cut(s)	151, 583, 770, 1062
BseGI	GGATG	2 cut(s)	495, 600
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMI	GCAATG	4 cut(s)	491, 915, 959, 1043
BseMII	CTCAG	2 cut(s)	62, 585
BseNI	ACTGG	2 cut(s)	683, 844
BseXI	GCAGC	3 cut(s)	129, 900, 976
BseYI	CCCAGC	1 cut(s)	595
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	1064
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	688
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	2 cut(s)	61, 584
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	835
BspMI	ACCTGC	1 cut(s)	620
BspOI	GCTAGC	1 cut(s)	242
BspQI	GCTCTTC	1 cut(s)	305
BsrDI	GCAATG	4 cut(s)	491, 915, 959, 1043
BsrGI	TGTACA	1 cut(s)	688
BsrI	ACTGG	2 cut(s)	683, 844
BssECI	CCNNGG	4 cut(s)	151, 583, 770, 1062
BssNAI	GTATAC	2 cut(s)	699, 937
BssT1I	CCWWGG	2 cut(s)	583, 770
Bst1107I	GTATAC	2 cut(s)	699, 937
Bst2UI	CCWGG	2 cut(s)	152, 530
Bst4CI	ACNGT	2 cut(s)	34, 211
Bst6I	CTCTTC	1 cut(s)	305
BstAUI	TGTACA	1 cut(s)	688
BstC8I	GCNNGC	3 cut(s)	240, 317, 845
BstDEI	CTNAG	3 cut(s)	48, 461, 571
BstF5I	GGATG	2 cut(s)	495, 600
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	3 cut(s)	25, 321, 595
BstMAI	GTCTC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	961
BstNI	CCWGG	2 cut(s)	152, 530
BstNSI	RCATGY	1 cut(s)	1009
BstSCI	CCNGG	3 cut(s)	150, 528, 1062
BstSFI	CTRYAG	1 cut(s)	300
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	3 cut(s)	129, 900, 976
BstV2I	GAAGAC	1 cut(s)	727
BstZ17I	GTATAC	2 cut(s)	699, 937
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	495, 600
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	11, 837
BveI	ACCTGC	1 cut(s)	620
Cac8I	GCNNGC	3 cut(s)	240, 317, 845
CfoI	GCGC	3 cut(s)	25, 321, 595
Cfr13I	GGNCC	2 cut(s)	767, 834
Csp6I	GTAC	6 cut(s)	10, 196, 290, 676, 689, 1009
CviAII	CATG	3 cut(s)	555, 855, 1006
CviQI	GTAC	6 cut(s)	10, 196, 290, 676, 689, 1009
DdeI	CTNAG	3 cut(s)	48, 461, 571
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco130I	CCWWGG	2 cut(s)	583, 770
Eco32I	GATATC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	767, 834
Eco57I	CTGAAG	2 cut(s)	246, 730
EcoRII	CCWGG	2 cut(s)	150, 528
EcoRV	GATATC	1 cut(s)	96
EcoT14I	CCWWGG	2 cut(s)	583, 770
ErhI	CCWWGG	2 cut(s)	583, 770
FaeI	CATG	3 cut(s)	558, 858, 1009
FatI	CATG	3 cut(s)	554, 854, 1005
FblI	GTMKAC	3 cut(s)	698, 936, 1035
Fnu4HI	GCNGC	4 cut(s)	21, 118, 914, 965
FokI	GGATG	2 cut(s)	502, 587
Fsp4HI	GCNGC	4 cut(s)	21, 118, 914, 965
FspBI	CTAG	4 cut(s)	99, 114, 239, 350
GlaI	GCGC	3 cut(s)	24, 320, 594
GluI	GCNGC	4 cut(s)	21, 118, 914, 965
GsaI	CCCAGC	1 cut(s)	599
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	1 cut(s)	1064
HhaI	GCGC	3 cut(s)	25, 321, 595
Hin1II	CATG	3 cut(s)	558, 858, 1009
Hin6I	GCGC	3 cut(s)	23, 319, 593
HinP1I	GCGC	3 cut(s)	23, 319, 593
HinfI	GANTC	3 cut(s)	156, 560, 1069
HpaII	CCGG	1 cut(s)	1064
HphI	GGTGA	2 cut(s)	22, 31
Hpy166II	GTNNAC	6 cut(s)	89, 637, 699, 837, 937, 1036
Hpy188I	TCNGA	3 cut(s)	408, 423, 1074
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	6 cut(s)	89, 637, 699, 837, 937, 1036
HpyAV	CCTTC	4 cut(s)	143, 294, 345, 880
HpyCH4III	ACNGT	2 cut(s)	34, 211
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	4 cut(s)	4, 206, 484, 964
HpyF10VI	GCNNNNNNNGC	1 cut(s)	961
HpyF3I	CTNAG	3 cut(s)	48, 461, 571
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	3 cut(s)	558, 858, 1009
HspAI	GCGC	3 cut(s)	23, 319, 593
LguI	GCTCTTC	1 cut(s)	305
Lsp1109I	GCAGC	3 cut(s)	129, 900, 976
LweI	GCATC	2 cut(s)	560, 609
MaeI	CTAG	4 cut(s)	99, 114, 239, 350
MaeII	ACGT	1 cut(s)	701
MaeIII	GTNAC	3 cut(s)	430, 802, 996
MboII	GAAGA	5 cut(s)	322, 477, 667, 670, 727
MfeI	CAATTG	2 cut(s)	495, 692
MluCI	AATT	5 cut(s)	65, 426, 495, 692, 711
MlyI	GAGTC	1 cut(s)	1078
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	3 cut(s)	47, 48, 1029
MroXI	GAANNNNTTC	1 cut(s)	472
MseI	TTAA	2 cut(s)	534, 824
MslI	CAYNNNNRTG	1 cut(s)	360
MspI	CCGG	1 cut(s)	1064
MspR9I	CCNGG	3 cut(s)	152, 530, 1064
MunI	CAATTG	2 cut(s)	495, 692
MvaI	CCWGG	2 cut(s)	152, 530
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	961
NciI	CCSGG	1 cut(s)	1064
NheI	GCTAGC	1 cut(s)	238
NlaIII	CATG	3 cut(s)	558, 858, 1009
NlaIV	GGNNCC	1 cut(s)	835
NmuCI	GTSAC	1 cut(s)	996
NspI	RCATGY	1 cut(s)	1009
PaqCI	CACCTGC	1 cut(s)	620
PciI	ACATGT	1 cut(s)	1005
PciSI	GCTCTTC	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	156, 560
PkrI	GCNGC	4 cut(s)	22, 119, 915, 966
PleI	GAGTC	1 cut(s)	1077
PpsI	GAGTC	1 cut(s)	1077
PscI	ACATGT	1 cut(s)	1005
Psp6I	CCWGG	2 cut(s)	150, 528
PspFI	CCCAGC	1 cut(s)	595
PspGI	CCWGG	2 cut(s)	150, 528
PspN4I	GGNNCC	1 cut(s)	835
PspPI	GGNCC	2 cut(s)	767, 834
RsaI	GTAC	6 cut(s)	11, 197, 291, 677, 690, 1010
RsaNI	GTAC	6 cut(s)	10, 196, 290, 676, 689, 1009
RseI	CAYNNNNRTG	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	534, 824
SatI	GCNGC	4 cut(s)	21, 118, 914, 965
Sau96I	GGNCC	2 cut(s)	767, 834
SchI	GAGTC	1 cut(s)	1078
ScrFI	CCNGG	3 cut(s)	152, 530, 1064
SfaNI	GCATC	2 cut(s)	560, 609
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	2 cut(s)	767, 834
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	5 cut(s)	65, 426, 495, 692, 711
SsiI	CCGC	1 cut(s)	21
SspI	AATATT	2 cut(s)	125, 880
SspMI	CTAG	4 cut(s)	99, 114, 239, 350
StyD4I	CCNGG	3 cut(s)	150, 528, 1062
StyI	CCWWGG	2 cut(s)	583, 770
TaaI	ACNGT	2 cut(s)	34, 211
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	1 cut(s)	738
TasI	AATT	5 cut(s)	65, 426, 495, 692, 711
TatI	WGTACW	3 cut(s)	675, 688, 1008
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	156, 560
Tru1I	TTAA	2 cut(s)	534, 824
Tru9I	TTAA	2 cut(s)	534, 824
TscAI	CASTG	1 cut(s)	844
TseFI	GTSAC	1 cut(s)	996
TseI	GCWGC	3 cut(s)	117, 913, 964
Tsp45I	GTSAC	1 cut(s)	996
TspDTI	ATGAA	7 cut(s)	90, 117, 125, 344, 668, 843, 878
TspGWI	ACGGA	2 cut(s)	204, 796
TspRI	CASTG	1 cut(s)	844
VpaK11BI	GGWCC	2 cut(s)	767, 834
XceI	RCATGY	1 cut(s)	1009
XcmI	CCANNNNNNNNNTGG	1 cut(s)	844
XmiI	GTMKAC	3 cut(s)	698, 936, 1035
XmnI	GAANNNNTTC	1 cut(s)	472
XspI	CTAG	4 cut(s)	99, 114, 239, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.