AT5G42180

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014043
Physical Location & Seq
Forward (+)
16852628 .. 16854224
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42180.1

Sequence Viewer

Length: 954 bp
ATGAATGCACACATGCTCAATCTCCTTGTCATAGTCATTTTTGTAGTTTCTTTCGATGTCCAAGCACTCAGTCCTCACTACTACGACCATACTTGTCCACAAGCCGACCACATTGTAACCAATGCAGTCAAGAAAGCCATGTCAAACGACCAAACTGTCCCTGCTGCGCTTTTGAGGATGCATTTCCACGACTGTTTCGTCAGAGGATGTGATGGCTCAGTTCTCTTAGACTCTAAGGGGAAGAACAAAGCAGAGAAAGATGGACCTCCTAACATCTCACTCCATGCATTTTATGTGATTGACAATGCAAAGAAGGCATTAGAAGAACAATGTCCCGGTATCGTCTCTTGCGCCGACATTCTTTCACTTGCGGCAAGAGATGCTGTCGCTCTCTCAGGAGGGCCTACATGGGCAGTGCCAAAAGGGAGAAAAGATGGAAGAATATCAAAGGCAATAGAAACAAGACAACTACCAGCTCCTACTTTCAACATTTCTCAATTGCGTCAAAATTTTGGCCAAAGAGGCCTCTCTATGCATGATCTTGTTGCTCTCTCTGGAGGTCATACACTAGGATTCGCCCACTGTTCATCGTTCCAGAATAGGCTCCATAAATTCAACACACAAAAGGAGGTTGACCCAACACTAAACCCCTCATTCGCAGCCAGGTTGGAGGGAGTGTGCCCGGCCCATAACACGGTGAAGAATGCTGGATCGAACATGGATGGAACCGTGACGTCATTCGACAATATCTACTACAAGATGCTTATCCAAGGCAAGTCACTATTCTCATCCGACGAATCGCTTCTTGCAGTACCCTCTACTAAGAAACTCGTGGCCAAATATGCAAATTCCAACGAAGAGTTCGAGAGGGCTTTTGTGAAATCGATGATCAAGATGAGTAGTATCAGTGGGAATGGCAATGAGGTCAGACTTAACTGCAGAAGGGTTCGCTAG

Protein Analysis

317

Amino Acids

34.71

Weight (kDa)

9.05

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 39 - 284 3.8e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014043)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42180
fragaria_vesca FvH4_1g11220
malus_domestica MD02G1124700.v1.1 MD15G1238800.v1.1
prunus_persica Prupe.7G173700_v2.0.a1 Prupe.7G173700_v2.0.a1
pyrus_communis pycom02g09740
rosa_chinensis RchiOBHm_Chr2g0098631
rosa_laevigata RLG00000016819
rosa_multiflora Rmu_sc0002776.1_g000019
rosa_roxburghii Rroxscaffold_2G00143830
rosa_rugosa Rorug02G0073800
rosa_samantha Rh2AG121600 Rh2BG125100 Rh2CG126100 Rh2DG127200
rosa_wichuraiana Rw0G004160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 155, 197
AatII GACGTC 1 cut(s) 737
AciI CCGC 1 cut(s) 371
AclWI GGATC 1 cut(s) 718
AcoI YGGCCR 2 cut(s) 514, 834
AcsI RAATTY 3 cut(s) 508, 611, 847
AcyI GRCGYC 1 cut(s) 734
AfaI GTAC 1 cut(s) 813
AfiI CCNNNNNNNGG 1 cut(s) 694
AgsI TTSAA 2 cut(s) 487, 616
AjnI CCWGG 1 cut(s) 662
AjuI GAANNNNNNNTTGG 2 cut(s) 845, 877
AluBI AGCT 1 cut(s) 476
AluI AGCT 1 cut(s) 476
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 1 cut(s) 718
AoxI GGCC 5 cut(s) 401, 514, 523, 684, 834
ApeKI GCWGC 2 cut(s) 164, 659
ApoI RAATTY 3 cut(s) 508, 611, 847
Asp700I GAANNNNTTC 1 cut(s) 801
AspLEI GCGC 2 cut(s) 169, 353
AspS9I GGNCC 3 cut(s) 263, 401, 685
AsuC2I CCSGG 2 cut(s) 336, 683
AsuHPI GGTGA 1 cut(s) 709
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 683
BalI TGGCCA 2 cut(s) 516, 836
BauI CACGAG 1 cut(s) 830
BbvI GCAGC 2 cut(s) 151, 671
BccI CCATC 4 cut(s) 206, 254, 428, 716
BciT130I CCWGG 1 cut(s) 664
BclI TGATCA 1 cut(s) 888
BcnI CCSGG 2 cut(s) 336, 683
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 2 cut(s) 569, 952
BfmI CTRYAG 1 cut(s) 937
BglI GCCNNNNNGGC 1 cut(s) 522
BisI GCNGC 3 cut(s) 165, 372, 660
BlsI GCNGC 3 cut(s) 166, 373, 661
Bme1390I CCNGG 3 cut(s) 336, 664, 683
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 3 cut(s) 263, 401, 685
BmiI GGNNCC 2 cut(s) 605, 727
BmrFI CCNGG 3 cut(s) 336, 664, 683
BmsI GCATC 3 cut(s) 168, 370, 750
BpmI CTGGAG 1 cut(s) 576
BpuMI CCSGG 2 cut(s) 336, 683
Bsa29I ATCGAT 1 cut(s) 884
BsaBI GATNNNNATC 1 cut(s) 764
BsaHI GRCGYC 1 cut(s) 734
BsaJI CCNNGG 1 cut(s) 769
BsaXI ACNNNNNCTCC 2 cut(s) 662, 692
Bsc4I CCNNNNNNNGG 1 cut(s) 694
Bse3DI GCAATG 1 cut(s) 925
Bse8I GATNNNNATC 1 cut(s) 764
BseBI CCWGG 1 cut(s) 664
BseCI ATCGAT 1 cut(s) 884
BseDI CCNNGG 1 cut(s) 769
BseGI GGATG 4 cut(s) 183, 212, 727, 788
BseJI GATNNNNATC 1 cut(s) 764
BseLI CCNNNNNNNGG 1 cut(s) 694
BseMI GCAATG 1 cut(s) 925
BseMII CTCAG 3 cut(s) 82, 231, 408
BseSI GKGCMC 1 cut(s) 683
BseXI GCAGC 2 cut(s) 151, 671
BshFI GGCC 5 cut(s) 403, 516, 525, 686, 836
BshVI ATCGAT 1 cut(s) 884
BsiSI CCGG 2 cut(s) 336, 683
BslFI GGGAC 2 cut(s) 143, 318
BslI CCNNNNNNNGG 1 cut(s) 694
BsmAI GTCTC 1 cut(s) 349
BsmBI CGTCTC 1 cut(s) 349
BsmFI GGGAC 2 cut(s) 143, 318
BsmI GAATGC 2 cut(s) 10, 709
BsnI GGCC 5 cut(s) 403, 516, 525, 686, 836
Bsp1286I GDGCHC 1 cut(s) 683
Bsp143I GATC 3 cut(s) 538, 710, 888
BspACI CCGC 1 cut(s) 371
BspANI GGCC 5 cut(s) 403, 516, 525, 686, 836
BspCNI CTCAG 3 cut(s) 81, 230, 407
BspDI ATCGAT 1 cut(s) 884
BspLI GGNNCC 2 cut(s) 605, 727
BspMAI CTGCAG 1 cut(s) 941
BspPI GGATC 1 cut(s) 718
BsrDI GCAATG 1 cut(s) 925
BssECI CCNNGG 1 cut(s) 769
BssMI GATC 3 cut(s) 538, 710, 888
BssNI GRCGYC 1 cut(s) 734
BssSI CACGAG 1 cut(s) 830
BssT1I CCWWGG 1 cut(s) 769
Bst2BI CACGAG 1 cut(s) 830
Bst2UI CCWGG 1 cut(s) 664
Bst4CI ACNGT 5 cut(s) 157, 194, 584, 697, 730
Bst6I CTCTTC 1 cut(s) 852
BstACI GRCGYC 1 cut(s) 734
BstAPI GCANNNNNTGC 1 cut(s) 380
BstDEI CTNAG 6 cut(s) 68, 217, 226, 234, 394, 822
BstF5I GGATG 4 cut(s) 183, 212, 727, 788
BstHHI GCGC 2 cut(s) 169, 353
BstKTI GATC 3 cut(s) 541, 713, 891
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 3 cut(s) 538, 710, 888
BstMWI GCNNNNNNNGC 4 cut(s) 314, 380, 522, 842
BstNI CCWGG 1 cut(s) 664
BstNSI RCATGY 1 cut(s) 16
BstSCI CCNGG 3 cut(s) 334, 662, 681
BstSFI CTRYAG 1 cut(s) 937
BstSLI GKGCMC 1 cut(s) 683
BstV1I GCAGC 2 cut(s) 151, 671
Bsu15I ATCGAT 1 cut(s) 884
BsuRI GGCC 5 cut(s) 403, 516, 525, 686, 836
BsuTUI ATCGAT 1 cut(s) 884
BtsCI GGATG 4 cut(s) 183, 212, 727, 788
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 3 cut(s) 420, 580, 913
CfoI GCGC 2 cut(s) 169, 353
Cfr13I GGNCC 3 cut(s) 263, 401, 685
ClaI ATCGAT 1 cut(s) 884
CseI GACGC 1 cut(s) 491
Csp6I GTAC 1 cut(s) 812
CviAII CATG 6 cut(s) 13, 139, 284, 408, 536, 718
CviQI GTAC 1 cut(s) 812
DdeI CTNAG 6 cut(s) 68, 217, 226, 234, 394, 822
DpnI GATC 3 cut(s) 540, 712, 890
DpnII GATC 3 cut(s) 538, 710, 888
DrdI GACNNNNNNGTC 2 cut(s) 155, 197
DseDI GACNNNNNNGTC 2 cut(s) 155, 197
EaeI YGGCCR 2 cut(s) 514, 834
Eam1104I CTCTTC 1 cut(s) 852
EarI CTCTTC 1 cut(s) 852
Eco130I CCWWGG 1 cut(s) 769
Eco147I AGGCCT 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 662
EcoT14I CCWWGG 1 cut(s) 769
EcoT22I ATGCAT 3 cut(s) 183, 289, 537
ErhI CCWWGG 1 cut(s) 769
Esp3I CGTCTC 1 cut(s) 349
FaeI CATG 6 cut(s) 16, 142, 287, 411, 539, 721
FaqI GGGAC 2 cut(s) 143, 318
FatI CATG 6 cut(s) 12, 138, 283, 407, 535, 717
FbaI TGATCA 1 cut(s) 888
Fnu4HI GCNGC 3 cut(s) 165, 372, 660
FokI GGATG 4 cut(s) 190, 219, 734, 775
Fsp4HI GCNGC 3 cut(s) 165, 372, 660
FspBI CTAG 2 cut(s) 569, 952
GlaI GCGC 2 cut(s) 168, 352
GluI GCNGC 3 cut(s) 165, 372, 660
GsuI CTGGAG 1 cut(s) 576
HaeIII GGCC 5 cut(s) 403, 516, 525, 686, 836
HapII CCGG 2 cut(s) 336, 683
HgaI GACGC 1 cut(s) 491
HhaI GCGC 2 cut(s) 169, 353
Hin1I GRCGYC 1 cut(s) 734
Hin1II CATG 6 cut(s) 16, 142, 287, 411, 539, 721
Hin6I GCGC 2 cut(s) 167, 351
HinP1I GCGC 2 cut(s) 167, 351
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HinfI GANTC 3 cut(s) 230, 573, 797
HpaII CCGG 2 cut(s) 336, 683
HphI GGTGA 1 cut(s) 709
Hpy166II GTNNAC 2 cut(s) 98, 634
Hpy188I TCNGA 3 cut(s) 203, 793, 929
Hpy188III TCNNGA 6 cut(s) 130, 396, 555, 595, 865, 892
Hpy8I GTNNAC 2 cut(s) 98, 634
Hpy99I CGWCG 1 cut(s) 797
HpyAV CCTTC 2 cut(s) 307, 936
HpyCH4III ACNGT 5 cut(s) 157, 194, 584, 697, 730
HpyCH4IV ACGT 1 cut(s) 734
HpyCH4V TGCA 9 cut(s) 8, 125, 181, 287, 308, 535, 809, 845, 939
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 380, 522, 842
HpyF3I CTNAG 6 cut(s) 68, 217, 226, 234, 394, 822
HpySE526I ACGT 1 cut(s) 734
Hsp92I GRCGYC 1 cut(s) 734
Hsp92II CATG 6 cut(s) 16, 142, 287, 411, 539, 721
HspAI GCGC 2 cut(s) 167, 351
Ksp22I TGATCA 1 cut(s) 888
Kzo9I GATC 3 cut(s) 538, 710, 888
LmnI GCTCC 2 cut(s) 481, 609
Lsp1109I GCAGC 2 cut(s) 151, 671
LweI GCATC 3 cut(s) 168, 370, 750
MaeI CTAG 2 cut(s) 569, 952
MaeII ACGT 1 cut(s) 734
MaeIII GTNAC 3 cut(s) 115, 730, 777
MalI GATC 3 cut(s) 540, 712, 890
MboI GATC 3 cut(s) 538, 710, 888
MboII GAAGA 5 cut(s) 253, 335, 450, 712, 869
MfeI CAATTG 1 cut(s) 497
MhlI GDGCHC 1 cut(s) 683
MlsI TGGCCA 2 cut(s) 516, 836
MluCI AATT 4 cut(s) 497, 508, 611, 847
MluNI TGGCCA 2 cut(s) 516, 836
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 3 cut(s) 648, 816, 876
Mox20I TGGCCA 2 cut(s) 516, 836
Mph1103I ATGCAT 3 cut(s) 183, 289, 537
MroXI GAANNNNTTC 1 cut(s) 801
MscI TGGCCA 2 cut(s) 516, 836
MseI TTAA 1 cut(s) 933
Msp20I TGGCCA 2 cut(s) 516, 836
MspI CCGG 2 cut(s) 336, 683
MspR9I CCNGG 3 cut(s) 336, 664, 683
MunI CAATTG 1 cut(s) 497
Mva1269I GAATGC 2 cut(s) 10, 709
MvaI CCWGG 1 cut(s) 664
MwoI GCNNNNNNNGC 4 cut(s) 314, 380, 522, 842
NciI CCSGG 2 cut(s) 336, 683
NdeII GATC 3 cut(s) 538, 710, 888
NlaIII CATG 6 cut(s) 16, 142, 287, 411, 539, 721
NlaIV GGNNCC 2 cut(s) 605, 727
NmuCI GTSAC 2 cut(s) 730, 777
NsiI ATGCAT 3 cut(s) 183, 289, 537
NspI RCATGY 1 cut(s) 16
PceI AGGCCT 1 cut(s) 525
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 861
PctI GAATGC 2 cut(s) 10, 709
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 2 cut(s) 573, 797
PkrI GCNGC 3 cut(s) 166, 373, 661
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 662
PspGI CCWGG 1 cut(s) 662
PspN4I GGNNCC 2 cut(s) 605, 727
PspPI GGNCC 3 cut(s) 263, 401, 685
PstI CTGCAG 1 cut(s) 941
RsaI GTAC 1 cut(s) 813
RsaNI GTAC 1 cut(s) 812
SaqAI TTAA 1 cut(s) 933
SatI GCNGC 3 cut(s) 165, 372, 660
Sau3AI GATC 3 cut(s) 538, 710, 888
Sau96I GGNCC 3 cut(s) 263, 401, 685
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 3 cut(s) 336, 664, 683
SduI GDGCHC 1 cut(s) 683
SetI ASST 7 cut(s) 268, 478, 562, 633, 668, 737, 927
SfaNI GCATC 3 cut(s) 168, 370, 750
SfcI CTRYAG 1 cut(s) 937
SfiI GGCCNNNNNGGCC 1 cut(s) 522
SinI GGWCC 1 cut(s) 263
Sse9I AATT 4 cut(s) 497, 508, 611, 847
SseBI AGGCCT 1 cut(s) 525
SsiI CCGC 1 cut(s) 371
SspMI CTAG 2 cut(s) 569, 952
StuI AGGCCT 1 cut(s) 525
StyD4I CCNGG 3 cut(s) 334, 662, 681
StyI CCWWGG 1 cut(s) 769
TaaI ACNGT 5 cut(s) 157, 194, 584, 697, 730
TaiI ACGT 1 cut(s) 737
TaqI TCGA 5 cut(s) 54, 713, 741, 864, 884
TasI AATT 4 cut(s) 497, 508, 611, 847
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 2 cut(s) 573, 797
Tru1I TTAA 1 cut(s) 933
Tru9I TTAA 1 cut(s) 933
TscAI CASTG 3 cut(s) 420, 587, 913
TseFI GTSAC 2 cut(s) 730, 777
TseI GCWGC 2 cut(s) 164, 659
Tsp45I GTSAC 2 cut(s) 730, 777
TspDTI ATGAA 2 cut(s) 17, 576
TspRI CASTG 3 cut(s) 420, 587, 913
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 3 cut(s) 508, 611, 847
XceI RCATGY 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 801
XspI CTAG 2 cut(s) 569, 952
ZraI GACGTC 1 cut(s) 735
Zsp2I ATGCAT 3 cut(s) 183, 289, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.