MD15G1238800.v1.1

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014043
Physical Location & Seq
Forward (+)
19672431 .. 19674217
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1238800.v1.1.491

Sequence Viewer

Length: 957 bp
ATGGCTTTCAATCCTGCATTATTGAGCTCAATCTTCATCGTCCTTTTGGTATTTTCCACAGTGACAAACGCGCTGAGCTTGAATTACTACGACAAGAGCTGTCCCAATGTCGAGCAAATTGTTTCTAATGCCGTCAAGAAGGGGAAAGCCAACGACGGAACTGTCCCTGCTGCTCTGCTCCGGATGCACTTCCACGACTGTTTCATAAGGGGCTGTGATGCATCTGTGCTGTTGGACTCCACCAGAGGCAACAAAGCAGAGAAAGATGGGCCACCAAATATTTCTCTGCATGCGTTTTATGTCATTGACAATGCAAAGAAACAAGTGGAGGCTTCCTGCCCTGGTGTTGTTTCATGTGCTGATATCTTGGCTTTGGCAGCAAGGGATGCTGTTGTGCAATCCGGAGGTCCGAATTGGGCCGTGCCGAAAGGAAGAAAAGATGGACGAACATCAAGGGCTAGTGAAAGCGTGCAACTGCCGGGTCCAACCTTCAACATATCTCAACTGCAGCAGAGCTTCTTTCAGAGAGGTCTGTCCTTGAATGACCTGGTGGCTCTTTCAGGAGGGCACACTCTAGGGTTCGCCCACTGCTCATCGTTCCAAAACAGAATTTACAACTTCAATGCCACACGCGACGTTGATCCAACACTGCGCCCATACTTTGCTGCAAGTTTGAGGAATACGTGTCCCATCAAGAACAGACCGAGGAATGCCGGTGCCACAATGGATTCTTCTTCTACAATTTTTGATAATACATACTTCAAGTTGATCCTCCAAGGAAAGAGCTTGTTTTCTTCGGACCAAGCTCTGGTCAGTATTCCACGGACTAAAGGTTTGGTTACTAAGTTTGCTTCCTCAAACCAAGCGTTCTCAGATGCTTTCGTGATGTCTATGATAAAGATGAGCAACCTTAATGGTGGACAAGAGATCAGGAAAGACTGCAGGGTAGTAAATTAA

Protein Analysis

319

Amino Acids

34.47

Weight (kDa)

9.37

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 285 2.8e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014043)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42180
fragaria_vesca FvH4_1g11220
malus_domestica MD02G1124700.v1.1 MD15G1238800.v1.1
prunus_persica Prupe.7G173700_v2.0.a1 Prupe.7G173700_v2.0.a1
pyrus_communis pycom02g09740
rosa_chinensis RchiOBHm_Chr2g0098631
rosa_laevigata RLG00000016819
rosa_multiflora Rmu_sc0002776.1_g000019
rosa_roxburghii Rroxscaffold_2G00143830
rosa_rugosa Rorug02G0073800
rosa_samantha Rh2AG121600 Rh2BG125100 Rh2CG126100 Rh2DG127200
rosa_wichuraiana Rw0G004160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 716
AccB7I CCANNNNNTGG 1 cut(s) 808
AccII CGCG 2 cut(s) 71, 633
AccIII TCCGGA 2 cut(s) 180, 401
AclWI GGATC 2 cut(s) 635, 763
AcsI RAATTY 1 cut(s) 609
AfiI CCNNNNNNNGG 1 cut(s) 808
AflIII ACRYGT 1 cut(s) 683
AgsI TTSAA 6 cut(s) 10, 82, 493, 541, 622, 763
AjnI CCWGG 2 cut(s) 340, 546
AluBI AGCT 6 cut(s) 27, 78, 99, 516, 786, 806
AluI AGCT 6 cut(s) 27, 78, 99, 516, 786, 806
Alw21I GWGCWC 1 cut(s) 29
AlwI GGATC 2 cut(s) 635, 763
Aor13HI TCCGGA 2 cut(s) 180, 401
AoxI GGCC 2 cut(s) 269, 417
ApeKI GCWGC 4 cut(s) 170, 377, 508, 665
ApoI RAATTY 1 cut(s) 609
ArsI GACNNNNNNTTYG 2 cut(s) 817, 849
AspLEI GCGC 2 cut(s) 73, 654
AspS9I GGNCC 5 cut(s) 269, 407, 417, 482, 799
AsuC2I CCSGG 1 cut(s) 480
AvaII GGWCC 3 cut(s) 407, 482, 799
BaeGI GKGCMC 1 cut(s) 570
BanI GGYRCC 1 cut(s) 716
BanII GRGCYC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 4 cut(s) 157, 389, 520, 652
BccI CCATC 3 cut(s) 260, 434, 698
BceAI ACGGC 2 cut(s) 116, 404
BciT130I CCWGG 2 cut(s) 342, 548
BcnI CCSGG 1 cut(s) 480
BfaI CTAG 2 cut(s) 459, 575
BfmI CTRYAG 2 cut(s) 506, 940
BisI GCNGC 4 cut(s) 171, 378, 509, 666
BlpI GCTNAGC 1 cut(s) 74
BlsI GCNGC 4 cut(s) 172, 379, 510, 667
Bme1390I CCNGG 3 cut(s) 342, 480, 548
Bme18I GGWCC 3 cut(s) 407, 482, 799
BmgT120I GGNCC 5 cut(s) 269, 407, 417, 482, 799
BmiI GGNNCC 2 cut(s) 483, 718
BmrFI CCNGG 3 cut(s) 342, 480, 548
BmsI GCATC 5 cut(s) 174, 208, 230, 376, 865
Bpu1102I GCTNAGC 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 480
BsaAI YACGTR 1 cut(s) 684
BsaJI CCNNGG 4 cut(s) 340, 704, 775, 821
BsaWI WCCGGW 2 cut(s) 180, 401
Bsc4I CCNNNNNNNGG 1 cut(s) 808
Bse118I RCCGGY 1 cut(s) 713
BseAI TCCGGA 2 cut(s) 180, 401
BseBI CCWGG 2 cut(s) 342, 548
BseDI CCNNGG 4 cut(s) 340, 704, 775, 821
BseGI GGATG 2 cut(s) 189, 391
BseLI CCNNNNNNNGG 1 cut(s) 808
BseMII CTCAG 2 cut(s) 65, 885
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 4 cut(s) 157, 389, 520, 652
Bsh1236I CGCG 2 cut(s) 71, 633
BshFI GGCC 2 cut(s) 271, 419
BshNI GGYRCC 1 cut(s) 716
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 4 cut(s) 181, 402, 479, 714
BslFI GGGAC 3 cut(s) 87, 149, 672
BslI CCNNNNNNNGG 1 cut(s) 808
BsmFI GGGAC 3 cut(s) 87, 149, 672
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 2 cut(s) 271, 419
Bsp1286I GDGCHC 2 cut(s) 29, 570
Bsp13I TCCGGA 2 cut(s) 180, 401
Bsp143I GATC 3 cut(s) 640, 768, 927
Bsp1720I GCTNAGC 1 cut(s) 74
BspANI GGCC 2 cut(s) 271, 419
BspCNI CTCAG 2 cut(s) 66, 884
BspEI TCCGGA 2 cut(s) 180, 401
BspFNI CGCG 2 cut(s) 71, 633
BspLI GGNNCC 2 cut(s) 483, 718
BspMAI CTGCAG 2 cut(s) 510, 944
BspPI GGATC 2 cut(s) 635, 763
BspT107I GGYRCC 1 cut(s) 716
BsrFI RCCGGY 1 cut(s) 713
BssAI RCCGGY 1 cut(s) 713
BssECI CCNNGG 4 cut(s) 340, 704, 775, 821
BssMI GATC 3 cut(s) 640, 768, 927
BssT1I CCWWGG 1 cut(s) 775
Bst2UI CCWGG 2 cut(s) 342, 548
Bst4CI ACNGT 3 cut(s) 61, 163, 200
BstAPI GCANNNNNTGC 1 cut(s) 386
BstBAI YACGTR 1 cut(s) 684
BstC8I GCNNGC 2 cut(s) 291, 470
BstDEI CTNAG 3 cut(s) 74, 843, 871
BstDSI CCRYGG 1 cut(s) 821
BstF5I GGATG 2 cut(s) 189, 391
BstFNI CGCG 2 cut(s) 71, 633
BstHHI GCGC 2 cut(s) 73, 654
BstKTI GATC 3 cut(s) 643, 771, 930
BstMBI GATC 3 cut(s) 640, 768, 927
BstMWI GCNNNNNNNGC 3 cut(s) 184, 377, 386
BstNI CCWGG 2 cut(s) 342, 548
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 3 cut(s) 340, 478, 546
BstSFI CTRYAG 2 cut(s) 506, 940
BstSLI GKGCMC 1 cut(s) 570
BstUI CGCG 2 cut(s) 71, 633
BstV1I GCAGC 4 cut(s) 157, 389, 520, 652
BsuRI GGCC 2 cut(s) 271, 419
BtgI CCRYGG 1 cut(s) 821
BtsCI GGATG 2 cut(s) 189, 391
BtsI GCAGTG 2 cut(s) 586, 647
BtsIMutI CAGTG 3 cut(s) 66, 586, 647
Cac8I GCNNGC 2 cut(s) 291, 470
CfoI GCGC 2 cut(s) 73, 654
Cfr10I RCCGGY 1 cut(s) 713
Cfr13I GGNCC 5 cut(s) 269, 407, 417, 482, 799
CsiI ACCWGGT 1 cut(s) 546
CviAII CATG 2 cut(s) 290, 354
DdeI CTNAG 3 cut(s) 74, 843, 871
DpnI GATC 3 cut(s) 642, 770, 929
DpnII GATC 3 cut(s) 640, 768, 927
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 775
Eco24I GRGCYC 1 cut(s) 29
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 3 cut(s) 407, 482, 799
Eco53kI GAGCTC 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 340, 546
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 775
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 775
FaeI CATG 2 cut(s) 293, 357
FaiI YATR 8 cut(s) 206, 291, 300, 355, 497, 658, 757, 893
FaqI GGGAC 3 cut(s) 87, 149, 672
FatI CATG 2 cut(s) 289, 353
Fnu4HI GCNGC 4 cut(s) 171, 378, 509, 666
FokI GGATG 2 cut(s) 196, 398
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 4 cut(s) 171, 378, 509, 666
FspBI CTAG 2 cut(s) 459, 575
GlaI GCGC 2 cut(s) 72, 653
GluI GCNGC 4 cut(s) 171, 378, 509, 666
HaeIII GGCC 2 cut(s) 271, 419
HapII CCGG 4 cut(s) 181, 402, 479, 714
HhaI GCGC 2 cut(s) 73, 654
Hin1II CATG 2 cut(s) 293, 357
Hin6I GCGC 2 cut(s) 71, 652
HinP1I GCGC 2 cut(s) 71, 652
HinfI GANTC 2 cut(s) 236, 728
HpaII CCGG 4 cut(s) 181, 402, 479, 714
Hpy166II GTNNAC 1 cut(s) 920
Hpy188I TCNGA 4 cut(s) 411, 525, 799, 874
Hpy188III TCNNGA 7 cut(s) 136, 181, 402, 561, 694, 883, 931
Hpy8I GTNNAC 1 cut(s) 920
Hpy99I CGWCG 2 cut(s) 158, 638
HpyAV CCTTC 2 cut(s) 133, 499
HpyCH4III ACNGT 3 cut(s) 61, 163, 200
HpyCH4IV ACGT 2 cut(s) 636, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 184, 377, 386
HpyF3I CTNAG 3 cut(s) 74, 843, 871
HpySE526I ACGT 2 cut(s) 636, 683
Hsp92II CATG 2 cut(s) 293, 357
HspAI GCGC 2 cut(s) 71, 652
Kpn2I TCCGGA 2 cut(s) 180, 401
Kzo9I GATC 3 cut(s) 640, 768, 927
LmnI GCTCC 1 cut(s) 183
Lsp1109I GCAGC 4 cut(s) 157, 389, 520, 652
LweI GCATC 5 cut(s) 174, 208, 230, 376, 865
MabI ACCWGGT 1 cut(s) 546
MaeI CTAG 2 cut(s) 459, 575
MaeII ACGT 2 cut(s) 636, 683
MaeIII GTNAC 2 cut(s) 61, 838
MalI GATC 3 cut(s) 642, 770, 929
MboI GATC 3 cut(s) 640, 768, 927
MboII GAAGA 5 cut(s) 25, 444, 723, 726, 786
MhlI GDGCHC 2 cut(s) 29, 570
MluCI AATT 6 cut(s) 82, 117, 412, 609, 741, 952
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 3 cut(s) 213, 509, 668
MnlI CCTC 9 cut(s) 239, 322, 398, 521, 557, 669, 699, 782, 865
Mph1103I ATGCAT 1 cut(s) 223
MroI TCCGGA 2 cut(s) 180, 401
MseI TTAA 2 cut(s) 912, 955
MspI CCGG 4 cut(s) 181, 402, 479, 714
MspR9I CCNGG 3 cut(s) 342, 480, 548
Mva1269I GAATGC 1 cut(s) 715
MvaI CCWGG 2 cut(s) 342, 548
MvnI CGCG 2 cut(s) 71, 633
MwoI GCNNNNNNNGC 3 cut(s) 184, 377, 386
NciI CCSGG 1 cut(s) 480
NdeII GATC 3 cut(s) 640, 768, 927
NlaIII CATG 2 cut(s) 293, 357
NlaIV GGNNCC 2 cut(s) 483, 718
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 293
PaeI GCATGC 1 cut(s) 293
PctI GAATGC 1 cut(s) 715
PfeI GAWTC 1 cut(s) 728
PflMI CCANNNNNTGG 1 cut(s) 808
PkrI GCNGC 4 cut(s) 172, 379, 510, 667
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 684
Psp124BI GAGCTC 1 cut(s) 29
Psp6I CCWGG 2 cut(s) 340, 546
PspGI CCWGG 2 cut(s) 340, 546
PspN4I GGNNCC 2 cut(s) 483, 718
PspPI GGNCC 5 cut(s) 269, 407, 417, 482, 799
PstI CTGCAG 2 cut(s) 510, 944
SacI GAGCTC 1 cut(s) 29
SaqAI TTAA 2 cut(s) 912, 955
SatI GCNGC 4 cut(s) 171, 378, 509, 666
Sau3AI GATC 3 cut(s) 640, 768, 927
Sau96I GGNCC 5 cut(s) 269, 407, 417, 482, 799
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 3 cut(s) 342, 480, 548
SduI GDGCHC 2 cut(s) 29, 570
SexAI ACCWGGT 1 cut(s) 546
SfaNI GCATC 5 cut(s) 174, 208, 230, 376, 865
SfcI CTRYAG 2 cut(s) 506, 940
SinI GGWCC 3 cut(s) 407, 482, 799
SphI GCATGC 1 cut(s) 293
Sse9I AATT 6 cut(s) 82, 117, 412, 609, 741, 952
SspI AATATT 1 cut(s) 280
SspMI CTAG 2 cut(s) 459, 575
SstI GAGCTC 1 cut(s) 29
StyD4I CCNGG 3 cut(s) 340, 478, 546
StyI CCWWGG 1 cut(s) 775
TaaI ACNGT 3 cut(s) 61, 163, 200
TaiI ACGT 2 cut(s) 639, 686
TaqI TCGA 1 cut(s) 111
TaqII GACCGA 1 cut(s) 718
TasI AATT 6 cut(s) 82, 117, 412, 609, 741, 952
TfiI GAWTC 1 cut(s) 728
Tru1I TTAA 2 cut(s) 912, 955
Tru9I TTAA 2 cut(s) 912, 955
TscAI CASTG 3 cut(s) 66, 593, 654
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 4 cut(s) 170, 377, 508, 665
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 25, 193, 342
TspGWI ACGGA 2 cut(s) 171, 838
TspRI CASTG 3 cut(s) 66, 593, 654
Van91I CCANNNNNTGG 1 cut(s) 808
VpaK11BI GGWCC 3 cut(s) 407, 482, 799
XapI RAATTY 1 cut(s) 609
XceI RCATGY 1 cut(s) 293
XspI CTAG 2 cut(s) 459, 575
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.