Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003345

Physical Location & Seq

Genomic Coordinates Forward (+)

5873940 .. 5876518

Gene Structure 2579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0073800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGACGGGAACAGTGGTGGTTTTTGACTTCGACCGGACCCTGATCGACGATGACACCGATCGATGGGTGGTGACGGAGATGGGTCTCACCCAGCTCTTCAATGAGCTTCGTCGCTCTACCATCACATGGAACTCACTCATGGATAGAATGATGATGGAGCTTCATTTACAAGGAAAGACCTCTGAGGACATTAAAGAGTGCCTCAAAAGAACTCCAATGCATCCACAAGTAGCTGCGGCTATTAAGTCAGCTCATGCTTCAGGATGTGACTTGAAGATAATTAGTGATGCAAATCAGTTTTTCATTGAGTCAATCTTGGAATGCCATGGCCTGTTGGGATGCTTCTCACAGATCATCACAAACCCAACGTCTGTAGATAGAGATGGAAGATTGAGAATCTTTCCTTACCATGATCCAGTCTCATCTTCTCATGGTTGCGATCTTTGCCCTTCAAATATGTGCAAGGGTCAGGTGATTGATCAATTTTTAGCTTCTGCTTCTGAAAATGGGAGGAAGAGATACATCTACCTTGGAGATGGGAGAAACGATTTTTGCCCAACTCTGAAACTAGTAGAGGGAGACCATGTAATGCCAAGGAAGGACTATCCTCTATGGGATCGCATTTGCAGCAACCGAATGCTTATCAAGGCTGATATCCATAAATGGAGTGATAGAGAGGAACTTGCTAAGATACTACTTCAGCTTATCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

237

Amino Acids

27.1

Weight (kDa)

5.9

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	4 - 236	1.3e-91	Putative Phosphatase
HAD	PF12710	6 - 184	1.2e-09	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02530 AT5G16070
fragaria_vesca	FvH4_1g11210
malus_domestica	MD09G1086000.v1.1 MD17G1104900.v1.1
prunus_persica	Prupe.3G238800_v2.0.a1
pyrus_communis	pycom09g01130 pycom17g07580
rosa_chinensis	RchiOBHm_Chr2g0098621 RchiOBHm_Chr2g0138531 RchiOBHm_Chr4g0407281 RchiOBHm_Chr4g0409191 RchiOBHm_Chr6g0270681
rosa_laevigata	RLG00000013776 RLG00000016815
rosa_multiflora	Rmu_co8186612.1_g000001 Rmu_sc0000474.1_g000003 Rmu_sc0002106.1_g000012 Rmu_sc0002776.1_g000012
rosa_roxburghii	Rroxscaffold_2G00143840 Rroxscaffold_7G00197690
rosa_rugosa	Rorug02G0073800 Rorug06G0055700
rosa_samantha	Rh2AG121400 Rh2BG125000 Rh2CG126000 Rh2DG127100 Rh5BG537700 Rh6AG175000 Rh6AG275700 Rh6CG174300 Rh6DG166700 Rh7CG256600
rosa_wichuraiana	Rw0G004140 Rw0G012590 Rw6G014910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	126
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	2 cut(s)	407, 624
AcuI	CTGAAG	2 cut(s)	243, 683
AfiI	CCNNNNNNNGG	2 cut(s)	63, 126
AgsI	TTSAA	3 cut(s)	100, 274, 453
AhlI	ACTAGT	1 cut(s)	568
AluBI	AGCT	7 cut(s)	94, 106, 160, 233, 251, 491, 703
AluI	AGCT	7 cut(s)	94, 106, 160, 233, 251, 491, 703
Alw26I	GTCTC	3 cut(s)	89, 424, 573
AlwI	GGATC	2 cut(s)	407, 624
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	2 cut(s)	233, 627
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	79, 82, 484
AvaII	GGWCC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	220, 639
BccI	CCATC	6 cut(s)	57, 73, 128, 148, 377, 530
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	3 cut(s)	89, 424, 573
BcuI	ACTAGT	1 cut(s)	568
BfaI	CTAG	1 cut(s)	569
BfmI	CTRYAG	1 cut(s)	372
BisI	GCNGC	3 cut(s)	234, 237, 628
BlsI	GCNGC	3 cut(s)	235, 238, 629
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	38
BmsI	GCATC	3 cut(s)	229, 277, 329
Bsa29I	ATCGAT	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	291
BsaI	GGTCTC	2 cut(s)	89, 573
BsaJI	CCNNGG	3 cut(s)	325, 529, 593
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 126
Bse1I	ACTGG	2 cut(s)	416, 709
Bse8I	GATNNNNATC	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	61
BseDI	CCNNGG	3 cut(s)	325, 529, 593
BseGI	GGATG	3 cut(s)	220, 269, 344
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	63, 126
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	2 cut(s)	416, 709
BseXI	GCAGC	2 cut(s)	220, 639
BseYI	CCCAGC	1 cut(s)	90
Bsh1285I	CGRYCG	2 cut(s)	34, 61
BshFI	GGCC	1 cut(s)	330
BshVI	ATCGAT	1 cut(s)	61
BsiEI	CGRYCG	2 cut(s)	34, 61
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	63, 126
BsmAI	GTCTC	3 cut(s)	89, 424, 573
BsmI	GAATGC	2 cut(s)	326, 642
BsnI	GGCC	1 cut(s)	330
Bso31I	GGTCTC	2 cut(s)	89, 573
Bsp143I	GATC	7 cut(s)	42, 58, 351, 412, 439, 478, 616
Bsp19I	CCATGG	1 cut(s)	325
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	175
BspDI	ATCGAT	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	407, 624
BspQI	GCTCTTC	1 cut(s)	101
BspTNI	GGTCTC	2 cut(s)	89, 573
BsrI	ACTGG	2 cut(s)	416, 709
BssECI	CCNNGG	3 cut(s)	325, 529, 593
BssMI	GATC	7 cut(s)	42, 58, 351, 412, 439, 478, 616
BssT1I	CCWWGG	3 cut(s)	325, 529, 593
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	2 cut(s)	101, 509
BstDEI	CTNAG	2 cut(s)	183, 687
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	3 cut(s)	220, 269, 344
BstKTI	GATC	7 cut(s)	45, 61, 354, 415, 442, 481, 619
BstMAI	GTCTC	3 cut(s)	89, 424, 573
BstMBI	GATC	7 cut(s)	42, 58, 351, 412, 439, 478, 616
BstMCI	CGRYCG	2 cut(s)	34, 61
BstMWI	GCNNNNNNNGC	2 cut(s)	444, 627
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	220, 639
Bsu15I	ATCGAT	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	330
BsuTUI	ATCGAT	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	3 cut(s)	220, 269, 344
BtsIMutI	CAGTG	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	61
CviAII	CATG	7 cut(s)	126, 139, 254, 326, 410, 431, 584
DdeI	CTNAG	2 cut(s)	183, 687
DpnI	GATC	7 cut(s)	44, 60, 353, 414, 441, 480, 618
DpnII	GATC	7 cut(s)	42, 58, 351, 412, 439, 478, 616
Eam1104I	CTCTTC	2 cut(s)	101, 509
EarI	CTCTTC	2 cut(s)	101, 509
Eco130I	CCWWGG	3 cut(s)	325, 529, 593
Eco31I	GGTCTC	2 cut(s)	89, 573
Eco32I	GATATC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	2 cut(s)	243, 683
EcoRV	GATATC	1 cut(s)	655
EcoT14I	CCWWGG	3 cut(s)	325, 529, 593
EcoT22I	ATGCAT	1 cut(s)	222
ErhI	CCWWGG	3 cut(s)	325, 529, 593
FaeI	CATG	7 cut(s)	129, 142, 257, 329, 413, 434, 587
FatI	CATG	7 cut(s)	125, 138, 253, 325, 409, 430, 583
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	3 cut(s)	234, 237, 628
FokI	GGATG	3 cut(s)	207, 276, 351
Fsp4HI	GCNGC	3 cut(s)	234, 237, 628
FspBI	CTAG	1 cut(s)	569
GluI	GCNGC	3 cut(s)	234, 237, 628
GsaI	CCCAGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	7 cut(s)	129, 142, 257, 329, 413, 434, 587
HinfI	GANTC	2 cut(s)	308, 396
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	3 cut(s)	79, 82, 484
Hpy188I	TCNGA	3 cut(s)	184, 502, 564
Hpy188III	TCNNGA	1 cut(s)	261
Hpy99I	CGWCG	2 cut(s)	50, 114
HpyAV	CCTTC	2 cut(s)	459, 592
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	4 cut(s)	220, 290, 462, 627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	444, 627
HpyF3I	CTNAG	2 cut(s)	183, 687
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	7 cut(s)	129, 142, 257, 329, 413, 434, 587
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	7 cut(s)	42, 58, 351, 412, 439, 478, 616
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	7 cut(s)	47, 53, 104, 246, 344, 429, 455
Lsp1109I	GCAGC	2 cut(s)	220, 639
LweI	GCATC	3 cut(s)	229, 277, 329
MaeI	CTAG	1 cut(s)	569
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	2 cut(s)	70, 266
MalI	GATC	7 cut(s)	44, 60, 353, 414, 441, 480, 618
MboI	GATC	7 cut(s)	42, 58, 351, 412, 439, 478, 616
MboII	GAAGA	5 cut(s)	88, 286, 399, 417, 526
MluCI	AATT	2 cut(s)	279, 482
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	7 cut(s)	178, 190, 212, 504, 568, 618, 670
Mph1103I	ATGCAT	1 cut(s)	222
MseI	TTAA	2 cut(s)	192, 243
MspI	CCGG	1 cut(s)	34
Mva1269I	GAATGC	2 cut(s)	326, 642
MwoI	GCNNNNNNNGC	2 cut(s)	444, 627
NcoI	CCATGG	1 cut(s)	325
NdeII	GATC	7 cut(s)	42, 58, 351, 412, 439, 478, 616
NlaIII	CATG	7 cut(s)	129, 142, 257, 329, 413, 434, 587
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	2 cut(s)	70, 266
NsiI	ATGCAT	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	2 cut(s)	326, 642
PfeI	GAWTC	1 cut(s)	396
PflMI	CCANNNNNTGG	1 cut(s)	126
PkrI	GCNGC	3 cut(s)	235, 238, 629
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	36
PvuI	CGATCG	1 cut(s)	61
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	192, 243
SatI	GCNGC	3 cut(s)	234, 237, 628
Sau3AI	GATC	7 cut(s)	42, 58, 351, 412, 439, 478, 616
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	317
SfaNI	GCATC	3 cut(s)	229, 277, 329
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	36
SpeI	ACTAGT	1 cut(s)	568
Sse9I	AATT	2 cut(s)	279, 482
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	1 cut(s)	569
StyI	CCWWGG	3 cut(s)	325, 529, 593
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	3 cut(s)	30, 45, 61
TasI	AATT	2 cut(s)	279, 482
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	2 cut(s)	192, 243
Tru9I	TTAA	2 cut(s)	192, 243
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	2 cut(s)	70, 266
TseI	GCWGC	2 cut(s)	233, 627
Tsp45I	GTSAC	2 cut(s)	70, 266
TspDTI	ATGAA	2 cut(s)	152, 292
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	36
XspI	CTAG	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.