Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003345

Physical Location & Seq

Genomic Coordinates Reverse (-)

32421537 .. 32424936

Gene Structure 3400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38024

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTTTGTGCGAGTGCTGAACCCTAATGCGGAGGTGCTGAACAAATCGGCGGCCCTGCACATGAACCTCAACGCCGCCAAGGGCTTGCAGGATGTGCTCAAAACCAACCTCGGCCCCAAAGGCACCATCAAAATGCTCGTCGGTGGCTCTGGAGACATCAAGCTCACTAAAGATTGCAACACTCTCCTCAAAGAAATGCAGATTCAAAACCCCACAGCAATTATGATTGCCAGGACAGCTGTTGCCCAAGATGACATAAGCGGGGATGGCACCATCTCTACTGTCCTATTCATTGGCGAGCTTATGAAACAATCCGAACGATTCATTGATGAAGATTGGAGTCTGCATGGTTGTATCACCAGGATGCATCCACGTGTCTTGGTTGATGGTTTTGAGATTGCCAAAAGTGCAACACTTCAATTTATCGAGAAATTTAAAACTCCTGTGGTAATGGGAAGTGAGCCTGACAAAGAAATCCTAAAAATGGTAGCAAGGACAACTGTGCGAACAAAGTTACATGACGCATTGGATGATCAATTGACTGACATAGTTGTAAATGCGGTTCTTTGCATCCGCATACCTGAGGAGGCAATTGATCTGTTTATGGTGGAGATTATGCACATGCGCCATAAATTTGATGCAGATACACGTTTGGTTGAGGGTCTTGTCCTTGATCATGGTTCTAGGCATCCTGATATGAAGCGACGAGCAGAGAATTGTTACATCTTGACAGCCAATGTATCTCTGGAGTACGAGAAAAGTGAAGTGAACTCTGGATTTTTCTATTCAAATGCGGAGCAGAGAGAAGCAATGGTTTGTTCTGGTAATGACAATAATTTTGTCGTTATCAATCAGAAGGGAATTGATCCCCCATCTCTGGACCTTCTGGCAAGGGCAGGGATTATTGCTCTGAGAAGAGCAAAGAGGAGAAATATGGAACGGTTGGTTTTGGCTTGTGGAGGGGAGGCAGTGAACTATGTAGATGATTTAACTCCTGATTGCCTTGGCTGGGCTGGACTTGTATATGAGCACGTCCTTGGTGAAGAGAAGTACACATTTGTCGAAAATGTGAAGAACCCTCATTCTTGCACAATCTTAATCAAAGGGCCTAATGATCATACAATTGCCCAGATTAAGGATGCTGTTCTTATTTACTCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

387

Amino Acids

43.09

Weight (kDa)

5.81

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	29 - 382	8.6e-101	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02530 AT5G16070
fragaria_vesca	FvH4_1g11210
malus_domestica	MD09G1086000.v1.1 MD17G1104900.v1.1
prunus_persica	Prupe.3G238800_v2.0.a1
pyrus_communis	pycom09g01130 pycom17g07580
rosa_chinensis	RchiOBHm_Chr2g0098621 RchiOBHm_Chr2g0138531 RchiOBHm_Chr4g0407281 RchiOBHm_Chr4g0409191 RchiOBHm_Chr6g0270681
rosa_laevigata	RLG00000013776 RLG00000016815
rosa_multiflora	Rmu_co8186612.1_g000001 Rmu_sc0000474.1_g000003 Rmu_sc0002106.1_g000012 Rmu_sc0002776.1_g000012
rosa_roxburghii	Rroxscaffold_2G00143840 Rroxscaffold_7G00197690
rosa_rugosa	Rorug02G0073800 Rorug06G0055700
rosa_samantha	Rh2AG121400 Rh2BG125000 Rh2CG126000 Rh2DG127100 Rh5BG537700 Rh6AG175000 Rh6AG275700 Rh6CG174300 Rh6DG166700 Rh7CG256600
rosa_wichuraiana	Rw0G004140 Rw0G012590 Rw6G014910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	122, 269
AciI	CCGC	7 cut(s)	29, 50, 75, 261, 560, 574, 794
AclWI	GGATC	1 cut(s)	860
AcsI	RAATTY	2 cut(s)	431, 632
AcvI	CACGTG	1 cut(s)	374
AfaI	GTAC	2 cut(s)	752, 1052
AfiI	CCNNNNNNNGG	5 cut(s)	28, 484, 877, 1009, 1135
AflIII	ACRYGT	2 cut(s)	373, 647
AgsI	TTSAA	3 cut(s)	206, 419, 789
AjiI	CACGTC	1 cut(s)	1033
AjnI	CCWGG	2 cut(s)	230, 359
AluBI	AGCT	3 cut(s)	163, 239, 301
AluI	AGCT	3 cut(s)	163, 239, 301
Alw21I	GWGCWC	2 cut(s)	99, 1032
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	860
AoxI	GGCC	3 cut(s)	51, 112, 1106
ApoI	RAATTY	2 cut(s)	431, 632
ArsI	GACNNNNNNTTYG	4 cut(s)	123, 155, 821, 853
AspLEI	GCGC	1 cut(s)	627
AspS9I	GGNCC	4 cut(s)	52, 113, 880, 1106
AsuHPI	GGTGA	2 cut(s)	349, 1052
AvaII	GGWCC	1 cut(s)	880
AxyI	CCTNAGG	1 cut(s)	582
BanI	GGYRCC	2 cut(s)	122, 269
BbrPI	CACGTG	1 cut(s)	374
Bbv12I	GWGCWC	2 cut(s)	99, 1032
BccI	CCATC	5 cut(s)	134, 260, 281, 380, 880
BciT130I	CCWGG	2 cut(s)	232, 361
BclI	TGATCA	3 cut(s)	532, 673, 1114
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	684
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	2 cut(s)	51, 75
BlsI	GCNGC	2 cut(s)	52, 76
Bme1390I	CCNGG	2 cut(s)	232, 361
Bme18I	GGWCC	1 cut(s)	880
BmgBI	CACGTC	1 cut(s)	1033
BmgT120I	GGNCC	4 cut(s)	52, 113, 880, 1106
BmiI	GGNNCC	3 cut(s)	115, 124, 271
BmrFI	CCNGG	2 cut(s)	232, 361
BmsI	GCATC	6 cut(s)	354, 376, 579, 628, 697, 1129
BpmI	CTGGAG	2 cut(s)	171, 767
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	4 cut(s)	78, 109, 1003, 1036
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 484, 877, 1009, 1135
Bse21I	CCTNAGG	1 cut(s)	582
Bse3DI	GCAATG	1 cut(s)	816
BseBI	CCWGG	2 cut(s)	232, 361
BseDI	CCNNGG	4 cut(s)	78, 109, 1003, 1036
BseGI	GGATG	8 cut(s)	97, 271, 367, 369, 535, 570, 688, 1144
BseLI	CCNNNNNNNGG	5 cut(s)	28, 484, 877, 1009, 1135
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	2 cut(s)	573, 902
BseRI	GAGGAG	3 cut(s)	176, 599, 940
BseYI	CCCAGC	1 cut(s)	1008
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	3 cut(s)	53, 114, 1108
BshNI	GGYRCC	2 cut(s)	122, 269
BsiHKAI	GWGCWC	2 cut(s)	99, 1032
BslI	CCNNNNNNNGG	5 cut(s)	28, 484, 877, 1009, 1135
BsmAI	GTCTC	1 cut(s)	147
BsnI	GGCC	3 cut(s)	53, 114, 1108
Bsp1286I	GDGCHC	2 cut(s)	99, 1032
Bsp143I	GATC	5 cut(s)	532, 595, 673, 865, 1114
BspACI	CCGC	7 cut(s)	29, 50, 75, 261, 560, 574, 794
BspANI	GGCC	3 cut(s)	53, 114, 1108
BspCNI	CTCAG	2 cut(s)	574, 903
BspLI	GGNNCC	3 cut(s)	115, 124, 271
BspPI	GGATC	1 cut(s)	860
BspQI	GCTCTTC	1 cut(s)	910
BspT107I	GGYRCC	2 cut(s)	122, 269
BsrDI	GCAATG	1 cut(s)	816
BssECI	CCNNGG	4 cut(s)	78, 109, 1003, 1036
BssMI	GATC	5 cut(s)	532, 595, 673, 865, 1114
BssT1I	CCWWGG	3 cut(s)	78, 1003, 1036
Bst2UI	CCWGG	2 cut(s)	232, 361
Bst4CI	ACNGT	3 cut(s)	283, 502, 942
Bst6I	CTCTTC	2 cut(s)	910, 1038
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	86, 299
BstDEI	CTNAG	2 cut(s)	582, 911
BstF5I	GGATG	8 cut(s)	97, 271, 367, 369, 535, 570, 688, 1144
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	5 cut(s)	535, 598, 676, 868, 1117
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	5 cut(s)	532, 595, 673, 865, 1114
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 120, 236, 267, 407
BstNI	CCWGG	2 cut(s)	232, 361
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	2 cut(s)	230, 359
Bsu36I	CCTNAGG	1 cut(s)	582
BsuRI	GGCC	3 cut(s)	53, 114, 1108
BtrI	CACGTC	1 cut(s)	1033
BtsCI	GGATG	8 cut(s)	97, 271, 367, 369, 535, 570, 688, 1144
BtsI	GCAGTG	1 cut(s)	975
BtsIMutI	CAGTG	1 cut(s)	975
Cac8I	GCNNGC	2 cut(s)	86, 299
CfoI	GCGC	1 cut(s)	627
Cfr13I	GGNCC	4 cut(s)	52, 113, 880, 1106
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	2 cut(s)	751, 1051
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	5 cut(s)	61, 347, 518, 622, 677
CviQI	GTAC	2 cut(s)	751, 1051
DdeI	CTNAG	2 cut(s)	582, 911
DpnI	GATC	5 cut(s)	534, 597, 675, 867, 1116
DpnII	GATC	5 cut(s)	532, 595, 673, 865, 1114
DraI	TTTAAA	1 cut(s)	436
Eam1104I	CTCTTC	2 cut(s)	910, 1038
EarI	CTCTTC	2 cut(s)	910, 1038
Eco130I	CCWWGG	3 cut(s)	78, 1003, 1036
Eco47I	GGWCC	1 cut(s)	880
Eco72I	CACGTG	1 cut(s)	374
Eco81I	CCTNAGG	1 cut(s)	582
EcoO109I	RGGNCCY	1 cut(s)	1106
EcoRII	CCWGG	2 cut(s)	230, 359
EcoT14I	CCWWGG	3 cut(s)	78, 1003, 1036
EcoT22I	ATGCAT	1 cut(s)	369
ErhI	CCWWGG	3 cut(s)	78, 1003, 1036
FaeI	CATG	5 cut(s)	64, 350, 521, 625, 680
FatI	CATG	5 cut(s)	60, 346, 517, 621, 676
FauI	CCCGC	1 cut(s)	254
FbaI	TGATCA	3 cut(s)	532, 673, 1114
Fnu4HI	GCNGC	2 cut(s)	51, 75
FokI	GGATG	8 cut(s)	104, 278, 354, 376, 542, 557, 675, 1151
Fsp4HI	GCNGC	2 cut(s)	51, 75
FspBI	CTAG	1 cut(s)	684
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	2 cut(s)	51, 75
GsaI	CCCAGC	1 cut(s)	1012
GsuI	CTGGAG	2 cut(s)	171, 767
HaeIII	GGCC	3 cut(s)	53, 114, 1108
HgaI	GACGC	1 cut(s)	530
HhaI	GCGC	1 cut(s)	627
Hin1II	CATG	5 cut(s)	64, 350, 521, 625, 680
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HinfI	GANTC	3 cut(s)	202, 321, 340
HphI	GGTGA	2 cut(s)	349, 1052
Hpy166II	GTNNAC	3 cut(s)	769, 973, 1053
Hpy188I	TCNGA	3 cut(s)	316, 855, 912
Hpy188III	TCNNGA	8 cut(s)	150, 427, 692, 727, 746, 774, 878, 995
Hpy8I	GTNNAC	3 cut(s)	769, 973, 1053
Hpy99I	CGWCG	2 cut(s)	143, 708
HpyAV	CCTTC	2 cut(s)	850, 893
HpyCH4III	ACNGT	3 cut(s)	283, 502, 942
HpyCH4IV	ACGT	3 cut(s)	373, 649, 1032
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 120, 236, 267, 407
HpyF3I	CTNAG	2 cut(s)	582, 911
HpySE526I	ACGT	3 cut(s)	373, 649, 1032
Hsp92II	CATG	5 cut(s)	64, 350, 521, 625, 680
HspAI	GCGC	1 cut(s)	625
Ksp22I	TGATCA	3 cut(s)	532, 673, 1114
Kzo9I	GATC	5 cut(s)	532, 595, 673, 865, 1114
LguI	GCTCTTC	1 cut(s)	910
LmnI	GCTCC	1 cut(s)	796
LweI	GCATC	6 cut(s)	354, 376, 579, 628, 697, 1129
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	3 cut(s)	373, 649, 1032
MaeIII	GTNAC	2 cut(s)	513, 719
MalI	GATC	5 cut(s)	534, 597, 675, 867, 1116
MboI	GATC	5 cut(s)	532, 595, 673, 865, 1114
MboII	GAAGA	4 cut(s)	344, 927, 1055, 1084
MfeI	CAATTG	3 cut(s)	536, 591, 1122
MhlI	GDGCHC	2 cut(s)	99, 1032
MlyI	GAGTC	1 cut(s)	349
Mph1103I	ATGCAT	1 cut(s)	369
MseI	TTAA	5 cut(s)	435, 989, 1097, 1134, 1162
MslI	CAYNNNNRTG	3 cut(s)	131, 362, 372
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	232, 361
MunI	CAATTG	3 cut(s)	536, 591, 1122
MvaI	CCWGG	2 cut(s)	232, 361
MwoI	GCNNNNNNNGC	5 cut(s)	94, 120, 236, 267, 407
NdeII	GATC	5 cut(s)	532, 595, 673, 865, 1114
NlaIII	CATG	5 cut(s)	64, 350, 521, 625, 680
NlaIV	GGNNCC	3 cut(s)	115, 124, 271
NmeAIII	GCCGAG	1 cut(s)	90
NsiI	ATGCAT	1 cut(s)	369
NspI	RCATGY	1 cut(s)	625
PciSI	GCTCTTC	1 cut(s)	910
PfeI	GAWTC	2 cut(s)	202, 321
PkrI	GCNGC	2 cut(s)	52, 76
PleI	GAGTC	1 cut(s)	348
PmaCI	CACGTG	1 cut(s)	374
PmlI	CACGTG	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	348
Ppu21I	YACGTR	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	230, 359
PspCI	CACGTG	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	1008
PspGI	CCWGG	2 cut(s)	230, 359
PspN4I	GGNNCC	3 cut(s)	115, 124, 271
PspPI	GGNCC	4 cut(s)	52, 113, 880, 1106
PsrI	GAACNNNNNNTAC	2 cut(s)	546, 578
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	2 cut(s)	752, 1052
RsaNI	GTAC	2 cut(s)	751, 1051
RseI	CAYNNNNRTG	3 cut(s)	131, 362, 372
SapI	GCTCTTC	1 cut(s)	910
SaqAI	TTAA	5 cut(s)	435, 989, 1097, 1134, 1162
SatI	GCNGC	2 cut(s)	51, 75
Sau3AI	GATC	5 cut(s)	532, 595, 673, 865, 1114
Sau96I	GGNCC	4 cut(s)	52, 113, 880, 1106
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	232, 361
SduI	GDGCHC	2 cut(s)	99, 1032
SfaNI	GCATC	6 cut(s)	354, 376, 579, 628, 697, 1129
SinI	GGWCC	1 cut(s)	880
SmiMI	CAYNNNNRTG	3 cut(s)	131, 362, 372
SsiI	CCGC	7 cut(s)	29, 50, 75, 261, 560, 574, 794
SspMI	CTAG	1 cut(s)	684
StyD4I	CCNGG	2 cut(s)	230, 359
StyI	CCWWGG	3 cut(s)	78, 1003, 1036
TaaI	ACNGT	3 cut(s)	283, 502, 942
TaiI	ACGT	3 cut(s)	376, 652, 1035
TaqI	TCGA	2 cut(s)	426, 1062
TatI	WGTACW	1 cut(s)	1050
TauI	GCSGC	2 cut(s)	53, 77
TfiI	GAWTC	2 cut(s)	202, 321
Tru1I	TTAA	5 cut(s)	435, 989, 1097, 1134, 1162
Tru9I	TTAA	5 cut(s)	435, 989, 1097, 1134, 1162
TscAI	CASTG	1 cut(s)	975
TspDTI	ATGAA	6 cut(s)	77, 280, 313, 320, 345, 713
TspRI	CASTG	1 cut(s)	975
VpaK11BI	GGWCC	1 cut(s)	880
XapI	RAATTY	2 cut(s)	431, 632
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	742
XspI	CTAG	1 cut(s)	684
Zsp2I	ATGCAT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.