Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003345

Physical Location & Seq

Genomic Coordinates Reverse (-)

29377160 .. 29377979

Gene Structure 820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37852

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGTGGAGATTATGCACATGCGCCATAAATTTGATGCAGATACACGTTTGGTTGAGGGTCTTGTCCTTGATCATGGTTCTAGGCATCCTGATATGAAGCGACGAGCAGAGAATTGTTACATCTTGACAGCCAATGTATCTCTGGAGTACGAGAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

53

Amino Acids

6.31

Weight (kDa)

6.9

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	1 - 52	3.8e-11	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02530 AT5G16070
fragaria_vesca	FvH4_1g11210
malus_domestica	MD09G1086000.v1.1 MD17G1104900.v1.1
prunus_persica	Prupe.3G238800_v2.0.a1
pyrus_communis	pycom09g01130 pycom17g07580
rosa_chinensis	RchiOBHm_Chr2g0098621 RchiOBHm_Chr2g0138531 RchiOBHm_Chr4g0407281 RchiOBHm_Chr4g0409191 RchiOBHm_Chr6g0270681
rosa_laevigata	RLG00000013776 RLG00000016815
rosa_multiflora	Rmu_co8186612.1_g000001 Rmu_sc0000474.1_g000003 Rmu_sc0002106.1_g000012 Rmu_sc0002776.1_g000012
rosa_roxburghii	Rroxscaffold_2G00143840 Rroxscaffold_7G00197690
rosa_rugosa	Rorug02G0073800 Rorug06G0055700
rosa_samantha	Rh2AG121400 Rh2BG125000 Rh2CG126000 Rh2DG127100 Rh5BG537700 Rh6AG175000 Rh6AG275700 Rh6CG174300 Rh6DG166700 Rh7CG256600
rosa_wichuraiana	Rw0G004140 Rw0G012590 Rw6G014910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	24
BclI	TGATCA	1 cut(s)	70
BfaI	CTAG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	25, 94
BseGI	GGATG	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	70
BssMI	GATC	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	85
CfoI	GCGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	2 cut(s)	19, 74
CviJI	RGCY	1 cut(s)	131
CviKI_1	RGCY	1 cut(s)	131
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
FaeI	CATG	2 cut(s)	22, 77
FaiI	YATR	5 cut(s)	14, 20, 27, 75, 95
FatI	CATG	2 cut(s)	18, 73
FbaI	TGATCA	1 cut(s)	70
FokI	GGATG	1 cut(s)	72
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	22, 77
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
Hpy188III	TCNNGA	3 cut(s)	89, 124, 143
Hpy99I	CGWCG	1 cut(s)	105
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	16, 38
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	2 cut(s)	22, 77
HspAI	GCGC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	2 cut(s)	102, 128
LweI	GCATC	2 cut(s)	25, 94
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	46
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MluCI	AATT	2 cut(s)	29, 112
MnlI	CCTC	1 cut(s)	49
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	22, 77
NspI	RCATGY	1 cut(s)	22
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	70
SetI	ASST	2 cut(s)	49, 161
SfaNI	GCATC	2 cut(s)	25, 94
Sse9I	AATT	2 cut(s)	29, 112
SspMI	CTAG	1 cut(s)	81
TaiI	ACGT	1 cut(s)	49
TasI	AATT	2 cut(s)	29, 112
TspDTI	ATGAA	1 cut(s)	110
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.