AT5G16070
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003345
Physical Location & Seq
Reverse (-)
5247354 .. 5251179
3826 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16070.1

Sequence Viewer

Length: 1608 bp
ATGTCAGTGCGAGTTCTGAATCCTAATGCCGAGGTTCTCAACAAATCTGCGGCGCTTCATATGACCATCAACGCCGCCAAGGGTTTGCAAGATGTACTCAAGTCGAATCTCGGTCCTAAAGGAACAATCAAAATGCTTGTTGGTGGTTCTGGGGATATTAAGCTTACCAAAGATGGGAACACGCTATTGAAGGAAATGCAAATTCAGAATCCAACAGCCATTATGATTGCGAGGACAGCTGTTGCACAGGATGATATAAGTGGTGATGGTACTACTTCCACTGTTATCTTCATTGGTGAGCTTATGAAACAGTCTGAACGCTGCATCGATGAAGGTATGCATCCACGAGTCCTAGTTGATGGTTTCGAGATTGCTAAGAGAGCTACTCTTCAATTTCTTGACAACTTCAAGACCCCTGTTGTTATGGGTGATGAAGTTGATAAAGAGATCCTAAAAATGGTTGCAAGAACGACACTAAGAACAAAATTGTACGAAGGCTTAGCTGATCAACTGACTGACATTGTCGTCAATTCGGTTCTTTGCATCCGAAAGCCTGAGGAAGCTATTGATCTGTTTATGGTGGAAATAATGCACATGCGTCACAAATTCGATGTTGACACACGATTGGTTGAGGGGCTTGTTCTGGATCATGGTTCGAGACACCCTGACATGAAACGACGCGCAGAAAATTGCCACATCTTAACTTGCAATGTGTCACTAGAGTATGAGAAGAGTGAAATCAATGCAGGATTTTTCTACTCTAATGCGGAGCAGAGGGAAGCCATGGTTACCGCAGAGAGGCGATCTGTTGATGAAAGAGTTAAGAAAATAATTGAGCTGAAGAAGAAGGTGTGTGGTGATAATGACAACTTTGTTGTCATAAATCAGAAGGGTATTGACCCACCATCATTGGATCTTCTTGCTAGAGAAGGGATTATTGGTCTTAGAAGAGCAAAGAGGAGGAACATGGAACGTTTAGTTTTGGCCTGTGGTGGAGAAGCTGTGAATTCTGTTGACGACTTGACCCCTGAGTCTCTTGGATGGGCTGGACTTGTCTATGAGCACGTTCTTGGGGAGGAAAAGTACACCTTTGTGGAGCAAGTGAAGAATCCTAATTCATGTACCATCCTCATAAAAGGGCCTAATGATCACACTATTGCCCAAATTAAGGACGCTGTTCGTGATGGTCTGAGATCGGTCAAGAACACCATAGAAGACGAGTGTGTTGTGTTAGGAGCAGGAGCTTTTGAAGTTGCAGCAAGGCAACACTTACTCAATGAAGTCAAGAAAACCGTTCAAGGGCGTGCCCAACTTGGCGTTGAAGCTTTTGCTAATGCCCTTCTCGTGGTGCCTAAGACACTTGCAGAAAATGCAGGTCTTGATACCCAAGATGTGATCATTTCTCTTACGAGCGAGCATGACAAAGGGAACGTTGTGGGACTGAACCTTCAGGACGGTGAACCTATTGACCCGCAGCTTGCTGGTATTTTTGATAATTACTCAGTGAAACGCCAACTTATCAATTCAGGGCCAGTGATTGCGTCGCAATTACTTTTGGTGGACGAAGTGATTCGTGCAGGCAGAAATATGAGGAAGCCTACTGCTTGA

Protein Analysis

535

Amino Acids

58.93

Weight (kDa)

5.88

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 29 - 527 4e-168 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 524, 1030
Acc36I ACCTGC 1 cut(s) 1364
AccB1I GGYRCC 1 cut(s) 1348
AccII CGCG 1 cut(s) 681
AciI CCGC 5 cut(s) 50, 75, 767, 792, 1472
AclI AACGTT 2 cut(s) 973, 1431
AclWI GGATC 3 cut(s) 442, 654, 921
AcsI RAATTY 3 cut(s) 201, 605, 1006
AcuI CTGAAG 2 cut(s) 860, 1433
AfaI GTAC 5 cut(s) 96, 271, 491, 1085, 1123
AfiI CCNNNNNNNGG 6 cut(s) 174, 457, 798, 1168, 1299, 1345
AgsI TTSAA 6 cut(s) 190, 392, 409, 1250, 1298, 1322
AjuI GAANNNNNNNTTGG 2 cut(s) 921, 953
AleI CACNNNNGTG 1 cut(s) 1091
Alw21I GWGCWC 1 cut(s) 1065
Alw26I GTCTC 2 cut(s) 652, 1038
AlwI GGATC 3 cut(s) 442, 654, 921
AoxI GGCC 3 cut(s) 984, 1139, 1529
ApeKI GCWGC 3 cut(s) 321, 1256, 1474
ApoI RAATTY 3 cut(s) 201, 605, 1006
Asp700I GAANNNNTTC 1 cut(s) 1569
AspLEI GCGC 2 cut(s) 55, 683
AspS9I GGNCC 3 cut(s) 113, 1139, 1529
AsuHPI GGTGA 5 cut(s) 275, 308, 440, 869, 1469
AvaII GGWCC 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 555
BaeGI GKGCMC 1 cut(s) 1309
BanI GGYRCC 1 cut(s) 1348
BauI CACGAG 2 cut(s) 345, 1343
BbsI GAAGAC 1 cut(s) 1221
Bbv12I GWGCWC 1 cut(s) 1065
BbvI GCAGC 3 cut(s) 308, 1268, 1486
BccI CCATC 8 cut(s) 74, 167, 260, 353, 913, 1035, 1133, 1178
BclI TGATCA 3 cut(s) 505, 1147, 1395
BcoDI GTCTC 2 cut(s) 652, 1038
BfaI CTAG 3 cut(s) 353, 719, 924
BfoI RGCGCY 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 1364
BisI GCNGC 5 cut(s) 51, 75, 322, 1257, 1475
BlpI GCTNAGC 1 cut(s) 499
BlsI GCNGC 5 cut(s) 52, 76, 323, 1258, 1476
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 3 cut(s) 113, 1139, 1529
BmiI GGNNCC 1 cut(s) 1350
BmsI GCATC 3 cut(s) 333, 349, 552
BpiI GAAGAC 1 cut(s) 1221
BplI GAGNNNNNCTC 2 cut(s) 370, 402
Bpu1102I GCTNAGC 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 327
BsaJI CCNNGG 3 cut(s) 30, 78, 783
BsaXI ACNNNNNCTCC 4 cut(s) 987, 1017, 1067, 1097
Bsc4I CCNNNNNNNGG 6 cut(s) 174, 457, 798, 1168, 1299, 1345
Bse1I ACTGG 1 cut(s) 1532
Bse21I CCTNAGG 1 cut(s) 555
Bse3DI GCAATG 1 cut(s) 715
BseCI ATCGAT 1 cut(s) 327
BseDI CCNNGG 3 cut(s) 30, 78, 783
BseGI GGATG 5 cut(s) 256, 340, 543, 1046, 1125
BseLI CCNNNNNNNGG 6 cut(s) 174, 457, 798, 1168, 1299, 1345
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 4 cut(s) 546, 1020, 1181, 1515
BseNI ACTGG 1 cut(s) 1532
BseRI GAGGAG 1 cut(s) 973
BseSI GKGCMC 1 cut(s) 1309
BseXI GCAGC 3 cut(s) 308, 1268, 1486
BsgI GTGCAG 1 cut(s) 1596
Bsh1236I CGCG 1 cut(s) 681
BshFI GGCC 3 cut(s) 986, 1141, 1531
BshNI GGYRCC 1 cut(s) 1348
BshVI ATCGAT 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 1065
BslFI GGGAC 1 cut(s) 1452
BslI CCNNNNNNNGG 6 cut(s) 174, 457, 798, 1168, 1299, 1345
BsmAI GTCTC 2 cut(s) 652, 1038
BsmFI GGGAC 1 cut(s) 1452
BsnI GGCC 3 cut(s) 986, 1141, 1531
Bsp1286I GDGCHC 2 cut(s) 1065, 1309
Bsp143I GATC 9 cut(s) 447, 505, 568, 646, 803, 913, 1147, 1193, 1395
Bsp1720I GCTNAGC 1 cut(s) 499
Bsp19I CCATGG 1 cut(s) 783
BspACI CCGC 5 cut(s) 50, 75, 767, 792, 1472
BspANI GGCC 3 cut(s) 986, 1141, 1531
BspCNI CTCAG 4 cut(s) 547, 1021, 1182, 1514
BspDI ATCGAT 1 cut(s) 327
BspFNI CGCG 1 cut(s) 681
BspLI GGNNCC 1 cut(s) 1350
BspMI ACCTGC 1 cut(s) 1364
BspPI GGATC 3 cut(s) 442, 654, 921
BspQI GCTCTTC 1 cut(s) 943
BspT107I GGYRCC 1 cut(s) 1348
BsrDI GCAATG 1 cut(s) 715
BsrI ACTGG 1 cut(s) 1532
BssECI CCNNGG 3 cut(s) 30, 78, 783
BssMI GATC 9 cut(s) 447, 505, 568, 646, 803, 913, 1147, 1193, 1395
BssSI CACGAG 2 cut(s) 345, 1343
BssT1I CCWWGG 2 cut(s) 78, 783
Bst2BI CACGAG 2 cut(s) 345, 1343
Bst4CI ACNGT 4 cut(s) 283, 312, 1294, 1457
Bst6I CTCTTC 3 cut(s) 393, 725, 943
BstAPI GCANNNNNTGC 1 cut(s) 1370
BstC8I GCNNGC 4 cut(s) 1305, 1415, 1479, 1579
BstDEI CTNAG 9 cut(s) 375, 476, 499, 555, 944, 1029, 1190, 1353, 1501
BstDSI CCRYGG 1 cut(s) 783
BstEII GGTNACC 1 cut(s) 787
BstF5I GGATG 5 cut(s) 256, 340, 543, 1046, 1125
BstFNI CGCG 1 cut(s) 681
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 55, 683
BstKTI GATC 9 cut(s) 450, 508, 571, 649, 806, 916, 1150, 1196, 1398
BstMAI GTCTC 2 cut(s) 652, 1038
BstMBI GATC 9 cut(s) 447, 505, 568, 646, 803, 913, 1147, 1193, 1395
BstMWI GCNNNNNNNGC 3 cut(s) 236, 380, 1370
BstNSI RCATGY 1 cut(s) 598
BstPI GGTNACC 1 cut(s) 787
BstSLI GKGCMC 1 cut(s) 1309
BstUI CGCG 1 cut(s) 681
BstV1I GCAGC 3 cut(s) 308, 1268, 1486
BstV2I GAAGAC 1 cut(s) 1221
BstX2I RGATCY 2 cut(s) 447, 913
BstYI RGATCY 2 cut(s) 447, 913
Bsu15I ATCGAT 1 cut(s) 327
Bsu36I CCTNAGG 1 cut(s) 555
BsuRI GGCC 3 cut(s) 986, 1141, 1531
BsuTUI ATCGAT 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 783
BtsCI GGATG 5 cut(s) 256, 340, 543, 1046, 1125
BtsIMutI CAGTG 4 cut(s) 12, 279, 1509, 1539
BveI ACCTGC 1 cut(s) 1364
Cac8I GCNNGC 4 cut(s) 1305, 1415, 1479, 1579
CfoI GCGC 2 cut(s) 55, 683
Cfr13I GGNCC 3 cut(s) 113, 1139, 1529
ClaI ATCGAT 1 cut(s) 327
CseI GACGC 4 cut(s) 587, 687, 1181, 1530
Csp6I GTAC 5 cut(s) 95, 270, 490, 1084, 1122
CspCI CAANNNNNGTGG 2 cut(s) 891, 926
CviAII CATG 7 cut(s) 595, 650, 670, 784, 967, 1119, 1418
CviQI GTAC 5 cut(s) 95, 270, 490, 1084, 1122
DdeI CTNAG 9 cut(s) 375, 476, 499, 555, 944, 1029, 1190, 1353, 1501
DpnI GATC 9 cut(s) 449, 507, 570, 648, 805, 915, 1149, 1195, 1397
DpnII GATC 9 cut(s) 447, 505, 568, 646, 803, 913, 1147, 1193, 1395
DrdI GACNNNNNNGTC 2 cut(s) 524, 1030
DseDI GACNNNNNNGTC 2 cut(s) 524, 1030
Eam1104I CTCTTC 3 cut(s) 393, 725, 943
EarI CTCTTC 3 cut(s) 393, 725, 943
Eco130I CCWWGG 2 cut(s) 78, 783
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 2 cut(s) 860, 1433
Eco81I CCTNAGG 1 cut(s) 555
Eco91I GGTNACC 1 cut(s) 787
EcoO109I RGGNCCY 1 cut(s) 1139
EcoO65I GGTNACC 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 1006
EcoT14I CCWWGG 2 cut(s) 78, 783
EcoT22I ATGCAT 1 cut(s) 342
ErhI CCWWGG 2 cut(s) 78, 783
FaeI CATG 7 cut(s) 598, 653, 673, 787, 970, 1122, 1421
FalI AAGNNNNNCTT 2 cut(s) 1073, 1105
FaqI GGGAC 1 cut(s) 1452
FatI CATG 7 cut(s) 594, 649, 669, 783, 966, 1118, 1417
FauI CCCGC 1 cut(s) 1479
FauNDI CATATG 1 cut(s) 60
FbaI TGATCA 3 cut(s) 505, 1147, 1395
Fnu4HI GCNGC 5 cut(s) 51, 75, 322, 1257, 1475
FokI GGATG 5 cut(s) 263, 327, 530, 1053, 1112
Fsp4HI GCNGC 5 cut(s) 51, 75, 322, 1257, 1475
FspBI CTAG 3 cut(s) 353, 719, 924
GlaI GCGC 2 cut(s) 54, 682
GluI GCNGC 5 cut(s) 51, 75, 322, 1257, 1475
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 3 cut(s) 986, 1141, 1531
HgaI GACGC 4 cut(s) 587, 687, 1181, 1530
HhaI GCGC 2 cut(s) 55, 683
Hin1II CATG 7 cut(s) 598, 653, 673, 787, 970, 1122, 1421
Hin6I GCGC 2 cut(s) 53, 681
HinP1I GCGC 2 cut(s) 53, 681
HincII GTYRAC 2 cut(s) 616, 1015
HindII GTYRAC 2 cut(s) 616, 1015
HindIII AAGCTT 2 cut(s) 161, 1323
HinfI GANTC 7 cut(s) 19, 106, 208, 348, 1031, 1108, 1570
HphI GGTGA 5 cut(s) 275, 308, 440, 869, 1469
Hpy166II GTNNAC 5 cut(s) 616, 1015, 1086, 1460, 1561
Hpy188I TCNGA 6 cut(s) 18, 207, 316, 548, 888, 1191
Hpy8I GTNNAC 5 cut(s) 616, 1015, 1086, 1460, 1561
Hpy99I CGWCG 2 cut(s) 681, 1546
HpyAV CCTTC 8 cut(s) 184, 326, 488, 841, 883, 923, 1349, 1457
HpyCH4III ACNGT 4 cut(s) 283, 312, 1294, 1457
HpyCH4IV ACGT 3 cut(s) 973, 1065, 1431
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 380, 1370
HpyF3I CTNAG 9 cut(s) 375, 476, 499, 555, 944, 1029, 1190, 1353, 1501
HpySE526I ACGT 3 cut(s) 973, 1065, 1431
Hsp92II CATG 7 cut(s) 598, 653, 673, 787, 970, 1122, 1421
HspAI GCGC 2 cut(s) 53, 681
Ksp22I TGATCA 3 cut(s) 505, 1147, 1395
Kzo9I GATC 9 cut(s) 447, 505, 568, 646, 803, 913, 1147, 1193, 1395
LguI GCTCTTC 1 cut(s) 943
LmnI GCTCC 4 cut(s) 769, 1096, 1235, 1241
Lsp1109I GCAGC 3 cut(s) 308, 1268, 1486
LweI GCATC 3 cut(s) 333, 349, 552
MaeI CTAG 3 cut(s) 353, 719, 924
MaeII ACGT 3 cut(s) 973, 1065, 1431
MaeIII GTNAC 3 cut(s) 599, 714, 787
MalI GATC 9 cut(s) 449, 507, 570, 648, 805, 915, 1149, 1195, 1397
MboI GATC 9 cut(s) 447, 505, 568, 646, 803, 913, 1147, 1193, 1395
MboII GAAGA 9 cut(s) 280, 380, 742, 853, 856, 908, 960, 1117, 1226
MflI RGATCY 2 cut(s) 447, 913
MhlI GDGCHC 2 cut(s) 1065, 1309
MlyI GAGTC 2 cut(s) 357, 1040
MmeI TCCRAC 1 cut(s) 236
Mph1103I ATGCAT 1 cut(s) 342
MroXI GAANNNNTTC 1 cut(s) 1569
MseI TTAA 4 cut(s) 159, 701, 822, 1167
MslI CAYNNNNRTG 1 cut(s) 1091
MspA1I CMGCKG 1 cut(s) 239
MvnI CGCG 1 cut(s) 681
MwoI GCNNNNNNNGC 3 cut(s) 236, 380, 1370
NcoI CCATGG 1 cut(s) 783
NdeI CATATG 1 cut(s) 60
NdeII GATC 9 cut(s) 447, 505, 568, 646, 803, 913, 1147, 1193, 1395
NlaIII CATG 7 cut(s) 598, 653, 673, 787, 970, 1122, 1421
NlaIV GGNNCC 1 cut(s) 1350
NmeAIII GCCGAG 1 cut(s) 55
NmuCI GTSAC 2 cut(s) 599, 714
NsiI ATGCAT 1 cut(s) 342
NspI RCATGY 1 cut(s) 598
OliI CACNNNNGTG 1 cut(s) 1091
PciSI GCTCTTC 1 cut(s) 943
PdmI GAANNNNTTC 1 cut(s) 1569
PfeI GAWTC 5 cut(s) 19, 106, 208, 1108, 1570
PflFI GACNNNGTC 1 cut(s) 521
PkrI GCNGC 5 cut(s) 52, 76, 323, 1258, 1476
PleI GAGTC 2 cut(s) 356, 1039
PpsI GAGTC 2 cut(s) 356, 1039
Psp1406I AACGTT 2 cut(s) 973, 1431
PspEI GGTNACC 1 cut(s) 787
PspN4I GGNNCC 1 cut(s) 1350
PspPI GGNCC 3 cut(s) 113, 1139, 1529
PsuI RGATCY 2 cut(s) 447, 913
PsyI GACNNNGTC 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 5 cut(s) 96, 271, 491, 1085, 1123
RsaNI GTAC 5 cut(s) 95, 270, 490, 1084, 1122
RseI CAYNNNNRTG 1 cut(s) 1091
SapI GCTCTTC 1 cut(s) 943
SaqAI TTAA 4 cut(s) 159, 701, 822, 1167
SatI GCNGC 5 cut(s) 51, 75, 322, 1257, 1475
Sau3AI GATC 9 cut(s) 447, 505, 568, 646, 803, 913, 1147, 1193, 1395
Sau96I GGNCC 3 cut(s) 113, 1139, 1529
SchI GAGTC 2 cut(s) 357, 1040
SduI GDGCHC 2 cut(s) 1065, 1309
SfaNI GCATC 3 cut(s) 333, 349, 552
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 1091
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SsiI CCGC 5 cut(s) 50, 75, 767, 792, 1472
SspMI CTAG 3 cut(s) 353, 719, 924
StyI CCWWGG 2 cut(s) 78, 783
TaaI ACNGT 4 cut(s) 283, 312, 1294, 1457
TaiI ACGT 3 cut(s) 976, 1068, 1434
TaqI TCGA 5 cut(s) 104, 327, 366, 609, 656
TaqII GACCGA 2 cut(s) 101, 1186
TatI WGTACW 2 cut(s) 94, 1083
TauI GCSGC 2 cut(s) 53, 77
TfiI GAWTC 5 cut(s) 19, 106, 208, 1108, 1570
Tru1I TTAA 4 cut(s) 159, 701, 822, 1167
Tru9I TTAA 4 cut(s) 159, 701, 822, 1167
TscAI CASTG 4 cut(s) 12, 286, 1509, 1539
TseFI GTSAC 2 cut(s) 599, 714
TseI GCWGC 3 cut(s) 321, 1256, 1474
Tsp45I GTSAC 2 cut(s) 599, 714
TspDTI ATGAA 9 cut(s) 47, 280, 320, 345, 447, 686, 828, 1107, 1293
TspRI CASTG 4 cut(s) 12, 286, 1509, 1539
Tth111I GACNNNGTC 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 3 cut(s) 201, 605, 1006
XceI RCATGY 1 cut(s) 598
XmnI GAANNNNTTC 1 cut(s) 1569
XspI CTAG 3 cut(s) 353, 719, 924
Zsp2I ATGCAT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.