Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003345

Physical Location & Seq

Genomic Coordinates Reverse (-)

24914687 .. 24926345

Gene Structure 11659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG256600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAGCCAAGCAGAATCAAGTATTCGGGAAGACCATGATATGTCTCAGACGTCCTATGCGGGTGCTGTTAGTAAAGAGGGGATGCATCCACGTGTCCTGGTTGATGGTTTTGAGATTGCCAAAAGTGCAACACTTCAATTTATCGAGAAATTTAAAACTCCTGTGGTAATGGGCAGTGAGCCTGACAAAGAAATCCTAAAAATGGTAGCAAGGACAACTGTGCGAACAAAGTTACATGAAGCATTGGCTGATCAATTGACTGACATAGTTGTAAATGCGGGTCTTTGCATCCACATACCTGAGGAGGCAATTGATCTGTTTATGGTGGAGATTATGCACATGCGCCATAAATTTGGGAATTATAACCTATACATACTCATATATATCTTCCGCTTTTGCTGTGACATGCGCTCAGAACTGGAGCCTGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

144

Amino Acids

16.34

Weight (kDa)

5.47

Isoelectric Point (pI)

58.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	23 - 117	1e-14	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02530 AT5G16070
fragaria_vesca	FvH4_1g11210
malus_domestica	MD09G1086000.v1.1 MD17G1104900.v1.1
prunus_persica	Prupe.3G238800_v2.0.a1
pyrus_communis	pycom09g01130 pycom17g07580
rosa_chinensis	RchiOBHm_Chr2g0098621 RchiOBHm_Chr2g0138531 RchiOBHm_Chr4g0407281 RchiOBHm_Chr4g0409191 RchiOBHm_Chr6g0270681
rosa_laevigata	RLG00000013776 RLG00000016815
rosa_multiflora	Rmu_co8186612.1_g000001 Rmu_sc0000474.1_g000003 Rmu_sc0002106.1_g000012 Rmu_sc0002776.1_g000012
rosa_roxburghii	Rroxscaffold_2G00143840 Rroxscaffold_7G00197690
rosa_rugosa	Rorug02G0073800 Rorug06G0055700
rosa_samantha	Rh2AG121400 Rh2BG125000 Rh2CG126000 Rh2DG127100 Rh5BG537700 Rh6AG175000 Rh6AG275700 Rh6CG174300 Rh6DG166700 Rh7CG256600
rosa_wichuraiana	Rw0G004140 Rw0G012590 Rw6G014910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AatII	GACGTC	1 cut(s)	53
AciI	CCGC	3 cut(s)	59, 278, 391
AcsI	RAATTY	2 cut(s)	149, 350
AcvI	CACGTG	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	202
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	2 cut(s)	96, 424
Alw26I	GTCTC	1 cut(s)	48
ApoI	RAATTY	2 cut(s)	149, 350
AspLEI	GCGC	2 cut(s)	345, 411
AxyI	CCTNAGG	1 cut(s)	300
BbrPI	CACGTG	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	36
BccI	CCATC	1 cut(s)	98
BciT130I	CCWGG	2 cut(s)	98, 426
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	48
Bme1390I	CCNGG	2 cut(s)	98, 426
BmiI	GGNNCC	2 cut(s)	423, 430
BmrFI	CCNGG	2 cut(s)	98, 426
BmsI	GCATC	3 cut(s)	72, 94, 297
BpiI	GAAGAC	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	423
Bse21I	CCTNAGG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	98, 426
BseGI	GGATG	3 cut(s)	85, 87, 288
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	3 cut(s)	59, 291, 426
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	250, 313
BspACI	CCGC	3 cut(s)	59, 278, 391
BspCNI	CTCAG	3 cut(s)	58, 292, 425
BspLI	GGNNCC	2 cut(s)	423, 430
BsrI	ACTGG	1 cut(s)	423
BssMI	GATC	2 cut(s)	250, 313
BssNI	GRCGYC	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	98, 426
Bst4CI	ACNGT	1 cut(s)	220
BstACI	GRCGYC	1 cut(s)	50
BstBAI	YACGTR	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	45, 300, 412
BstF5I	GGATG	3 cut(s)	85, 87, 288
BstHHI	GCGC	2 cut(s)	345, 411
BstKTI	GATC	2 cut(s)	253, 316
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	2 cut(s)	250, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	2 cut(s)	98, 426
BstNSI	RCATGY	2 cut(s)	343, 409
BstSCI	CCNGG	2 cut(s)	96, 424
BstV2I	GAAGAC	1 cut(s)	36
BstXI	CCANNNNNNTGG	1 cut(s)	353
Bsu36I	CCTNAGG	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	85, 87, 288
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	181
CfoI	GCGC	2 cut(s)	345, 411
CviAII	CATG	4 cut(s)	35, 236, 340, 406
CviJI	RGCY	5 cut(s)	6, 181, 248, 424, 431
CviKI_1	RGCY	5 cut(s)	6, 181, 248, 424, 431
DdeI	CTNAG	3 cut(s)	45, 300, 412
DpnI	GATC	2 cut(s)	252, 315
DpnII	GATC	2 cut(s)	250, 313
DraI	TTTAAA	1 cut(s)	154
Eco72I	CACGTG	1 cut(s)	92
Eco81I	CCTNAGG	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	96, 424
EcoT22I	ATGCAT	1 cut(s)	87
FaeI	CATG	4 cut(s)	38, 239, 343, 409
FatI	CATG	4 cut(s)	34, 235, 339, 405
FauI	CCCGC	2 cut(s)	52, 271
FbaI	TGATCA	1 cut(s)	250
FokI	GGATG	3 cut(s)	72, 94, 275
GlaI	GCGC	2 cut(s)	344, 410
HhaI	GCGC	2 cut(s)	345, 411
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	38, 239, 343, 409
Hin6I	GCGC	2 cut(s)	343, 409
HinP1I	GCGC	2 cut(s)	343, 409
HinfI	GANTC	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	48, 415
Hpy188III	TCNNGA	2 cut(s)	26, 145
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	2 cut(s)	50, 91
HpyCH4V	TGCA	4 cut(s)	85, 128, 288, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	3 cut(s)	45, 300, 412
HpySE526I	ACGT	2 cut(s)	50, 91
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	4 cut(s)	38, 239, 343, 409
HspAI	GCGC	2 cut(s)	343, 409
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	250, 313
LmnI	GCTCC	2 cut(s)	421, 428
LpnPI	CCDG	7 cut(s)	83, 110, 174, 195, 312, 404, 411
LweI	GCATC	3 cut(s)	72, 94, 297
MaeII	ACGT	2 cut(s)	50, 91
MaeIII	GTNAC	2 cut(s)	231, 401
MalI	GATC	2 cut(s)	252, 315
MboI	GATC	2 cut(s)	250, 313
MboII	GAAGA	2 cut(s)	41, 379
MfeI	CAATTG	2 cut(s)	254, 309
MluCI	AATT	6 cut(s)	137, 149, 254, 309, 350, 358
MnlI	CCTC	3 cut(s)	70, 295, 298
Mph1103I	ATGCAT	1 cut(s)	87
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	90
MspR9I	CCNGG	2 cut(s)	98, 426
MunI	CAATTG	2 cut(s)	254, 309
MvaI	CCWGG	2 cut(s)	98, 426
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	2 cut(s)	250, 313
NlaIII	CATG	4 cut(s)	38, 239, 343, 409
NlaIV	GGNNCC	2 cut(s)	423, 430
NmuCI	GTSAC	1 cut(s)	401
NsiI	ATGCAT	1 cut(s)	87
NspI	RCATGY	2 cut(s)	343, 409
PfeI	GAWTC	1 cut(s)	14
PmaCI	CACGTG	1 cut(s)	92
PmlI	CACGTG	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	92
PsiI	TTATAA	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	96, 424
PspCI	CACGTG	1 cut(s)	92
PspGI	CCWGG	2 cut(s)	96, 424
PspN4I	GGNNCC	2 cut(s)	423, 430
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	250, 313
ScrFI	CCNGG	2 cut(s)	98, 426
SetI	ASST	4 cut(s)	53, 94, 301, 369
SfaNI	GCATC	3 cut(s)	72, 94, 297
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	6 cut(s)	137, 149, 254, 309, 350, 358
SsiI	CCGC	3 cut(s)	59, 278, 391
StyD4I	CCNGG	2 cut(s)	96, 424
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	2 cut(s)	53, 94
TaqI	TCGA	1 cut(s)	144
TasI	AATT	6 cut(s)	137, 149, 254, 309, 350, 358
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	2 cut(s)	149, 350
XceI	RCATGY	2 cut(s)	343, 409
ZraI	GACGTC	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.