Rh6AG175000
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003345
Physical Location & Seq
Reverse (-)
28429339 .. 28434518
5180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG175000.1

Sequence Viewer

Length: 1341 bp
ATGTCTGTGCGAGTGCTGAACCCTAATGCGGAGGTGCTGAACAAGTCGGCGGCCCTGCACATGAACATCAACGCCGCCAAGGGCTTGCAGGATGTCCTCAAAACCAACCTCGGCCCCAAAGGCACCATCAAAATGCTCGTTGGTGGCTCTGGAGACATCAAGCTCACTAAAGATGGCAACACTCTCCTCAAAGAAATGCAGATTCAAAACCCCACAGCAATTATGATTGCCAGGACAGCTGTTGCCCAAGATGACATTAGCGGAGACGGCACCACCTCTACTGTCCTATTCATTGGCGAGCTTATGAAACAATCCGAACGATACATTGATGAAGGGATGCATCCACGTGTCCTGGTTGATGGTTTTGAGATTGCCAAAAGAGCAACTCTTCAATTTATCGAGAAATTTAAAACCACTGTGGTGATGGGCAGTGAGCCTGACAAAGAAATCCTAAAAATGGTAGCAAGGACAACTGTGCGAACAAAGTTACATGAAGCATTGGCTGATCAATTGACTGACATAGTTGTAAATGCGGTTCTTTGCGTCCGCAAACCTGAGGAGGCAATTGATCTGTTTATGGTGGAGATTATGCACATGCGCCATAAATTTGATGCAGATACACGTTTGGTTGAGGGTCTTGTCCTTGATCATGGTTCTAGGCATCCTGATATGAAGCGACGAGCAGAGAATTGTTACATCTTGACAGCCAATGTATCTCTGGAGTACGAGAAAAGTGAAGTGAACTCTGGATTTTTCTATTCAAATGCGGAGCAGAGAGAAGCAATGGTTTTAGCTGAAAGACGTCAGGTTGACGAGAGAGTTAGAAAGATTATTGAGCTGAAAAATAAGGTTTGTTCTGGTAATGACAAGAATTTTGTCGTTATCAATCAGAAGGGAATTGATCCCCCATCTCTGGACCTTCTGGCAAGGGCAGGGATTATTGCTCTGAGAAGAGCAAAGAGGAGAAATATGGAACGGTTGGTTTTGGCTTGTGGAGGGGAGGCAGTGAACTCTGTAGATGATTTAACTCCTGATTGCCTTGGCTGGGCTGGACTTGTATACGAGCACGTCCTTGGTGAAGAGAAGTACACATTTGTTGAAAATGTGAAGAACCCTCATTCTTGCACAATCTTAATCAAAGGGCCTAATGACCATACAATTGCCCAGATTAAGGATGCTGTTCGTGATGGTCTGAGGGCAGTGAAAAATACAATAGAAGATGAAGCTGTAATCTTGGGTGCTGGAGCTTTTGAAGTTGCAGCCAGACAATATCTCATAAATGAAGTGAAGAAAACTGTTCAAGGGGTAATCAATTGTCTCCCCCTCGTAGGAAATTTTTGA

Protein Analysis

446

Amino Acids

49.44

Weight (kDa)

6.81

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 29 - 435 7.1e-134 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 805
AccB1I GGYRCC 2 cut(s) 122, 269
AccI GTMKAC 1 cut(s) 1059
AciI CCGC 7 cut(s) 29, 50, 75, 261, 533, 547, 767
AclWI GGATC 1 cut(s) 896
AcsI RAATTY 4 cut(s) 404, 605, 871, 1333
AcvI CACGTG 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 802
AfaI GTAC 2 cut(s) 725, 1088
AfiI CCNNNNNNNGG 6 cut(s) 28, 457, 913, 1045, 1171, 1328
AflIII ACRYGT 2 cut(s) 346, 620
AgsI TTSAA 6 cut(s) 206, 392, 762, 1100, 1253, 1301
AjiI CACGTC 1 cut(s) 1069
AjnI CCWGG 2 cut(s) 230, 351
AleI CACNNNNGTG 1 cut(s) 419
AluBI AGCT 7 cut(s) 163, 239, 301, 794, 838, 1226, 1247
AluI AGCT 7 cut(s) 163, 239, 301, 794, 838, 1226, 1247
Alw21I GWGCWC 1 cut(s) 1068
Alw26I GTCTC 3 cut(s) 147, 258, 1322
AlwI GGATC 1 cut(s) 896
AoxI GGCC 3 cut(s) 51, 112, 1142
ApeKI GCWGC 1 cut(s) 1259
ApoI RAATTY 4 cut(s) 404, 605, 871, 1333
ArsI GACNNNNNNTTYG 2 cut(s) 857, 889
AspLEI GCGC 1 cut(s) 600
AspS9I GGNCC 4 cut(s) 52, 113, 916, 1142
AsuHPI GGTGA 2 cut(s) 433, 1088
AvaII GGWCC 1 cut(s) 916
AxyI CCTNAGG 1 cut(s) 555
BanI GGYRCC 2 cut(s) 122, 269
BbrPI CACGTG 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 1068
BbvI GCAGC 1 cut(s) 1271
BccI CCATC 6 cut(s) 134, 167, 353, 418, 916, 1181
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 2 cut(s) 232, 353
BclI TGATCA 2 cut(s) 505, 646
BcoDI GTCTC 3 cut(s) 147, 258, 1322
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 1 cut(s) 1014
BglI GCCNNNNNGGC 1 cut(s) 120
BisI GCNGC 3 cut(s) 51, 75, 1260
BlsI GCNGC 3 cut(s) 52, 76, 1261
Bme1390I CCNGG 2 cut(s) 232, 353
Bme18I GGWCC 1 cut(s) 916
BmgBI CACGTC 1 cut(s) 1069
BmgT120I GGNCC 4 cut(s) 52, 113, 916, 1142
BmiI GGNNCC 3 cut(s) 115, 124, 271
BmrFI CCNGG 2 cut(s) 232, 353
BmsI GCATC 5 cut(s) 327, 349, 601, 670, 1165
BpmI CTGGAG 3 cut(s) 171, 740, 1263
BsaAI YACGTR 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 802
BsaJI CCNNGG 4 cut(s) 78, 109, 1039, 1072
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 457, 913, 1045, 1171, 1328
Bse21I CCTNAGG 1 cut(s) 555
Bse3DI GCAATG 1 cut(s) 789
BseBI CCWGG 2 cut(s) 232, 353
BseDI CCNNGG 4 cut(s) 78, 109, 1039, 1072
BseGI GGATG 5 cut(s) 97, 340, 342, 661, 1180
BseLI CCNNNNNNNGG 6 cut(s) 28, 457, 913, 1045, 1171, 1328
BseMI GCAATG 1 cut(s) 789
BseMII CTCAG 3 cut(s) 546, 938, 1184
BseRI GAGGAG 3 cut(s) 176, 572, 976
BseXI GCAGC 1 cut(s) 1271
BseYI CCCAGC 1 cut(s) 1044
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 3 cut(s) 53, 114, 1144
BshNI GGYRCC 2 cut(s) 122, 269
BsiHKAI GWGCWC 1 cut(s) 1068
BslI CCNNNNNNNGG 6 cut(s) 28, 457, 913, 1045, 1171, 1328
BsmAI GTCTC 3 cut(s) 147, 258, 1322
BsmBI CGTCTC 1 cut(s) 258
BsnI GGCC 3 cut(s) 53, 114, 1144
Bsp1286I GDGCHC 1 cut(s) 1068
Bsp143I GATC 4 cut(s) 505, 568, 646, 901
BspACI CCGC 7 cut(s) 29, 50, 75, 261, 533, 547, 767
BspANI GGCC 3 cut(s) 53, 114, 1144
BspCNI CTCAG 3 cut(s) 547, 939, 1185
BspLI GGNNCC 3 cut(s) 115, 124, 271
BspPI GGATC 1 cut(s) 896
BspQI GCTCTTC 1 cut(s) 946
BspT107I GGYRCC 2 cut(s) 122, 269
BsrDI GCAATG 1 cut(s) 789
BssECI CCNNGG 4 cut(s) 78, 109, 1039, 1072
BssMI GATC 4 cut(s) 505, 568, 646, 901
BssNAI GTATAC 1 cut(s) 1060
BssNI GRCGYC 1 cut(s) 802
BssT1I CCWWGG 3 cut(s) 78, 1039, 1072
Bst1107I GTATAC 1 cut(s) 1060
Bst2UI CCWGG 2 cut(s) 232, 353
Bst4CI ACNGT 5 cut(s) 283, 418, 475, 978, 1297
Bst6I CTCTTC 3 cut(s) 393, 946, 1074
BstACI GRCGYC 1 cut(s) 802
BstBAI YACGTR 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 86, 299
BstDEI CTNAG 3 cut(s) 555, 947, 1193
BstF5I GGATG 5 cut(s) 97, 340, 342, 661, 1180
BstHHI GCGC 1 cut(s) 600
BstKTI GATC 4 cut(s) 508, 571, 649, 904
BstMAI GTCTC 3 cut(s) 147, 258, 1322
BstMBI GATC 4 cut(s) 505, 568, 646, 901
BstMWI GCNNNNNNNGC 4 cut(s) 120, 236, 267, 380
BstNI CCWGG 2 cut(s) 232, 353
BstNSI RCATGY 1 cut(s) 598
BstSCI CCNGG 2 cut(s) 230, 351
BstSFI CTRYAG 1 cut(s) 1014
BstV1I GCAGC 1 cut(s) 1271
BstZ17I GTATAC 1 cut(s) 1060
Bsu36I CCTNAGG 1 cut(s) 555
BsuRI GGCC 3 cut(s) 53, 114, 1144
BtrI CACGTC 1 cut(s) 1069
BtsCI GGATG 5 cut(s) 97, 340, 342, 661, 1180
BtsI GCAGTG 3 cut(s) 436, 1011, 1206
BtsIMutI CAGTG 4 cut(s) 414, 436, 1011, 1206
Cac8I GCNNGC 2 cut(s) 86, 299
CfoI GCGC 1 cut(s) 600
Cfr13I GGNCC 4 cut(s) 52, 113, 916, 1142
CseI GACGC 1 cut(s) 532
Csp6I GTAC 2 cut(s) 724, 1087
CviAII CATG 4 cut(s) 61, 491, 595, 650
CviQI GTAC 2 cut(s) 724, 1087
DdeI CTNAG 3 cut(s) 555, 947, 1193
DpnI GATC 4 cut(s) 507, 570, 648, 903
DpnII GATC 4 cut(s) 505, 568, 646, 901
DraI TTTAAA 1 cut(s) 409
Eam1104I CTCTTC 3 cut(s) 393, 946, 1074
EarI CTCTTC 3 cut(s) 393, 946, 1074
Eco130I CCWWGG 3 cut(s) 78, 1039, 1072
Eco47I GGWCC 1 cut(s) 916
Eco72I CACGTG 1 cut(s) 347
Eco81I CCTNAGG 1 cut(s) 555
EcoO109I RGGNCCY 1 cut(s) 1142
EcoRII CCWGG 2 cut(s) 230, 351
EcoT14I CCWWGG 3 cut(s) 78, 1039, 1072
EcoT22I ATGCAT 1 cut(s) 342
ErhI CCWWGG 3 cut(s) 78, 1039, 1072
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 4 cut(s) 64, 494, 598, 653
FatI CATG 4 cut(s) 60, 490, 594, 649
FbaI TGATCA 2 cut(s) 505, 646
FblI GTMKAC 1 cut(s) 1059
Fnu4HI GCNGC 3 cut(s) 51, 75, 1260
FokI GGATG 5 cut(s) 104, 327, 349, 648, 1187
Fsp4HI GCNGC 3 cut(s) 51, 75, 1260
FspBI CTAG 1 cut(s) 657
GlaI GCGC 1 cut(s) 599
GluI GCNGC 3 cut(s) 51, 75, 1260
GsaI CCCAGC 1 cut(s) 1048
GsuI CTGGAG 3 cut(s) 171, 740, 1263
HaeIII GGCC 3 cut(s) 53, 114, 1144
HgaI GACGC 1 cut(s) 532
HhaI GCGC 1 cut(s) 600
Hin1I GRCGYC 1 cut(s) 802
Hin1II CATG 4 cut(s) 64, 494, 598, 653
Hin6I GCGC 1 cut(s) 598
HinP1I GCGC 1 cut(s) 598
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HinfI GANTC 1 cut(s) 202
HphI GGTGA 2 cut(s) 433, 1088
Hpy166II GTNNAC 5 cut(s) 742, 811, 1009, 1060, 1089
Hpy188I TCNGA 4 cut(s) 316, 891, 948, 1194
Hpy188III TCNNGA 9 cut(s) 150, 400, 665, 700, 719, 747, 914, 1031, 1184
Hpy8I GTNNAC 5 cut(s) 742, 811, 1009, 1060, 1089
Hpy99I CGWCG 1 cut(s) 681
HpyAV CCTTC 3 cut(s) 326, 886, 929
HpyCH4III ACNGT 5 cut(s) 283, 418, 475, 978, 1297
HpyCH4IV ACGT 4 cut(s) 346, 622, 802, 1068
HpyCH4V TGCA 8 cut(s) 58, 88, 199, 340, 592, 614, 1125, 1259
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 236, 267, 380
HpyF3I CTNAG 3 cut(s) 555, 947, 1193
HpySE526I ACGT 4 cut(s) 346, 622, 802, 1068
Hsp92I GRCGYC 1 cut(s) 802
Hsp92II CATG 4 cut(s) 64, 494, 598, 653
HspAI GCGC 1 cut(s) 598
Ksp22I TGATCA 2 cut(s) 505, 646
Kzo9I GATC 4 cut(s) 505, 568, 646, 901
LguI GCTCTTC 1 cut(s) 946
LmnI GCTCC 2 cut(s) 769, 1244
Lsp1109I GCAGC 1 cut(s) 1271
LweI GCATC 5 cut(s) 327, 349, 601, 670, 1165
MaeI CTAG 1 cut(s) 657
MaeII ACGT 4 cut(s) 346, 622, 802, 1068
MaeIII GTNAC 2 cut(s) 486, 692
MalI GATC 4 cut(s) 507, 570, 648, 903
MboI GATC 4 cut(s) 505, 568, 646, 901
MboII GAAGA 6 cut(s) 380, 963, 1091, 1120, 1229, 1300
MfeI CAATTG 4 cut(s) 509, 564, 1158, 1312
MhlI GDGCHC 1 cut(s) 1068
Mph1103I ATGCAT 1 cut(s) 342
MseI TTAA 4 cut(s) 408, 1025, 1133, 1170
MslI CAYNNNNRTG 3 cut(s) 131, 345, 419
MspA1I CMGCKG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 232, 353
MunI CAATTG 4 cut(s) 509, 564, 1158, 1312
MvaI CCWGG 2 cut(s) 232, 353
MwoI GCNNNNNNNGC 4 cut(s) 120, 236, 267, 380
NdeII GATC 4 cut(s) 505, 568, 646, 901
NlaIII CATG 4 cut(s) 64, 494, 598, 653
NlaIV GGNNCC 3 cut(s) 115, 124, 271
NmeAIII GCCGAG 1 cut(s) 90
NsiI ATGCAT 1 cut(s) 342
NspI RCATGY 1 cut(s) 598
OliI CACNNNNGTG 1 cut(s) 419
PciSI GCTCTTC 1 cut(s) 946
PfeI GAWTC 1 cut(s) 202
PkrI GCNGC 3 cut(s) 52, 76, 1261
PmaCI CACGTG 1 cut(s) 347
PmlI CACGTG 1 cut(s) 347
Ppu21I YACGTR 1 cut(s) 347
Psp6I CCWGG 2 cut(s) 230, 351
PspCI CACGTG 1 cut(s) 347
PspFI CCCAGC 1 cut(s) 1044
PspGI CCWGG 2 cut(s) 230, 351
PspN4I GGNNCC 3 cut(s) 115, 124, 271
PspPI GGNCC 4 cut(s) 52, 113, 916, 1142
PsrI GAACNNNNNNTAC 2 cut(s) 519, 551
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 2 cut(s) 725, 1088
RsaNI GTAC 2 cut(s) 724, 1087
RseI CAYNNNNRTG 3 cut(s) 131, 345, 419
SapI GCTCTTC 1 cut(s) 946
SaqAI TTAA 4 cut(s) 408, 1025, 1133, 1170
SatI GCNGC 3 cut(s) 51, 75, 1260
Sau3AI GATC 4 cut(s) 505, 568, 646, 901
Sau96I GGNCC 4 cut(s) 52, 113, 916, 1142
ScrFI CCNGG 2 cut(s) 232, 353
SduI GDGCHC 1 cut(s) 1068
SfaNI GCATC 5 cut(s) 327, 349, 601, 670, 1165
SfcI CTRYAG 1 cut(s) 1014
SinI GGWCC 1 cut(s) 916
SmiMI CAYNNNNRTG 3 cut(s) 131, 345, 419
SsiI CCGC 7 cut(s) 29, 50, 75, 261, 533, 547, 767
SspMI CTAG 1 cut(s) 657
StyD4I CCNGG 2 cut(s) 230, 351
StyI CCWWGG 3 cut(s) 78, 1039, 1072
TaaI ACNGT 5 cut(s) 283, 418, 475, 978, 1297
TaiI ACGT 4 cut(s) 349, 625, 805, 1071
TaqI TCGA 1 cut(s) 399
TatI WGTACW 1 cut(s) 1086
TauI GCSGC 2 cut(s) 53, 77
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 4 cut(s) 408, 1025, 1133, 1170
Tru9I TTAA 4 cut(s) 408, 1025, 1133, 1170
TscAI CASTG 4 cut(s) 421, 436, 1011, 1206
TseI GCWGC 1 cut(s) 1259
TspDTI ATGAA 8 cut(s) 77, 280, 320, 345, 507, 686, 1236, 1296
TspRI CASTG 4 cut(s) 421, 436, 1011, 1206
VpaK11BI GGWCC 1 cut(s) 916
XapI RAATTY 4 cut(s) 404, 605, 871, 1333
XceI RCATGY 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 2 cut(s) 421, 715
XmiI GTMKAC 1 cut(s) 1059
XspI CTAG 1 cut(s) 657
ZraI GACGTC 1 cut(s) 803
Zsp2I ATGCAT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.