Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000474.1

Orthogroup ID

OG0003345

Physical Location & Seq

Genomic Coordinates Reverse (-)

27180 .. 28154

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000474.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgcatccacgtgtcctggttgatggttttgagattgccaaaagtgcaacacttcaatttatcgagaaatttaaaactcctgtggtaatgggcagtgagcctgacaaagaaatcctaaaaatggtagcaaggacaactgtgcgaacaaagttacatgaagcattggctgatcaattgactgacatagttgtaaatgcggttgagggtcttgtccttgatcatggttctaggcatcctgatatgaagcgacgagcagagaattgttacatcttgacagccaatgtatctctggagtacgagaaaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

102

Amino Acids

11.56

Weight (kDa)

6.91

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02530 AT5G16070
fragaria_vesca	FvH4_1g11210
malus_domestica	MD09G1086000.v1.1 MD17G1104900.v1.1
prunus_persica	Prupe.3G238800_v2.0.a1
pyrus_communis	pycom09g01130 pycom17g07580
rosa_chinensis	RchiOBHm_Chr2g0098621 RchiOBHm_Chr2g0138531 RchiOBHm_Chr4g0407281 RchiOBHm_Chr4g0409191 RchiOBHm_Chr6g0270681
rosa_laevigata	RLG00000013776 RLG00000016815
rosa_multiflora	Rmu_co8186612.1_g000001 Rmu_sc0000474.1_g000003 Rmu_sc0002106.1_g000012 Rmu_sc0002776.1_g000012
rosa_roxburghii	Rroxscaffold_2G00143840 Rroxscaffold_7G00197690
rosa_rugosa	Rorug02G0073800 Rorug06G0055700
rosa_samantha	Rh2AG121400 Rh2BG125000 Rh2CG126000 Rh2DG127100 Rh5BG537700 Rh6AG175000 Rh6AG275700 Rh6CG174300 Rh6DG166700 Rh7CG256600
rosa_wichuraiana	Rw0G004140 Rw0G012590 Rw6G014910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	68
AcvI	CACGTG	1 cut(s)	11
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	68
BbrPI	CACGTG	1 cut(s)	11
BccI	CCATC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	17
BclI	TGATCA	2 cut(s)	169, 217
BfaI	CTAG	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	2 cut(s)	13, 241
BsaAI	YACGTR	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	4, 232
BseLI	CCNNNNNNNGG	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	121
Bsp143I	GATC	2 cut(s)	169, 217
BspACI	CCGC	1 cut(s)	197
BssMI	GATC	2 cut(s)	169, 217
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	4, 232
BstKTI	GATC	2 cut(s)	172, 220
BstMBI	GATC	2 cut(s)	169, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	4, 232
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	2 cut(s)	155, 221
CviJI	RGCY	3 cut(s)	100, 167, 278
CviKI_1	RGCY	3 cut(s)	100, 167, 278
CviQI	GTAC	1 cut(s)	295
DpnI	GATC	2 cut(s)	171, 219
DpnII	GATC	2 cut(s)	169, 217
DraI	TTTAAA	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	15
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	158, 224
FaiI	YATR	4 cut(s)	156, 185, 222, 242
FatI	CATG	2 cut(s)	154, 220
FbaI	TGATCA	2 cut(s)	169, 217
FokI	GGATG	1 cut(s)	219
FspBI	CTAG	1 cut(s)	228
Hin1II	CATG	2 cut(s)	158, 224
Hpy188III	TCNNGA	4 cut(s)	64, 236, 271, 290
Hpy99I	CGWCG	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	4, 47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	158, 224
Ksp22I	TGATCA	2 cut(s)	169, 217
Kzo9I	GATC	2 cut(s)	169, 217
LpnPI	CCDG	6 cut(s)	2, 29, 93, 114, 249, 275
LweI	GCATC	2 cut(s)	13, 241
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	2 cut(s)	150, 263
MalI	GATC	2 cut(s)	171, 219
MboI	GATC	2 cut(s)	169, 217
MfeI	CAATTG	1 cut(s)	173
MluCI	AATT	4 cut(s)	56, 68, 173, 259
MnlI	CCTC	1 cut(s)	196
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	2 cut(s)	169, 217
NlaIII	CATG	2 cut(s)	158, 224
NsiI	ATGCAT	1 cut(s)	6
PmaCI	CACGTG	1 cut(s)	11
PmlI	CACGTG	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	15
PspCI	CACGTG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	72
Sau3AI	GATC	2 cut(s)	169, 217
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	2 cut(s)	13, 308
SfaNI	GCATC	2 cut(s)	13, 241
SmiMI	CAYNNNNRTG	1 cut(s)	9
Sse9I	AATT	4 cut(s)	56, 68, 173, 259
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	63
TasI	AATT	4 cut(s)	56, 68, 173, 259
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	171, 257
TspRI	CASTG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.