Rorug06G0055700
TCP Family

assists the folding of proteins upon ATP hydrolysis

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
7648013 .. 7651008
2996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0055700.1

Sequence Viewer

Length: 1092 bp
ATGGCCACTTCTCTACTTTGTCCAAACACCTTCCTTCATGGCACCAAGATCTTCTCTGCTCCCCCAAGAAGGGTCTCACCTCCGAGAAGCTTCAAACCCGTAGCTTCCATGGCTTCGGACCACGTTCCCAAGCAGTTCAGGGAAGAGAACCTCAAAGATGGATTGATGGATAATTATAAGAATGTGCCGCAATATCTGTATGGGCTTTCTCCTTCCCAAATGGACATGTTTATGACTGAAGATAACCCTGCAAGACGCCAGTCGGAAAGTGTTACAGAGAATAGCATTTCATCCGCCAACAATTATTTGAACAATGGAGGGATGTGGAGTATGTCAGGCATGGATGAAAAGGGCCCTGCAAAATATAGTATGAGTGTGAGCATGTATCGTGGTGGTGCAACAGGATACGGGAGACCCCGAACTGCTCCTCCGGATTTGCCTTCTTTACTATTGGATGCTCGGATTTGCTACTTGGGAATGCCGATTGTGCCAGCAGTAACTGAGCTTCTGGTTGCTCAGTTTATGTGGTTGGATTATGATAACCCCTCGAAGCCTATATATCTGTACATAAATTCATCTGGAACACAGAATGAGAAGATGGAGAGCGTTGGATCTGAAACTGAGGCATATGCCATTGCTGACATGATGAAATATGTCAAAGCAGATGTGTATACAGTGAATTGTGGCATGGCCTATGGTCAAGCAGCACTGCTCCTGTCACTTGGAGCAAAGGGTTATCGTGCTGTGCAGCCGAATTCCTCCACAAAGTTATATCTGCCTAAGGTCAGCAGGTCAAGTGGATCAGTCATTGACATGTGGATTAAGGCCAAGGAACTGGATGCAAACACCGAGTATTACATTGAGCTGCTTGCGAAAGGAACGGGGAAATCCAAGGAAGAAATTGCTAAAGACATCCGGCGCCCCAAGTATTTTCAAGGACAAGAAGCTATAGAATACGGGCTTGTTGACAAGATAATTGATTCACGTGATTCTGCATTTGAGAAACGGAATTACGATGAGATGCTTACTCAATCAAGAGCTATGAGGAGAGCTGGCGCAGGGCCTCAAGCAGCTCCATCTGGATTTAGGTGA

Protein Analysis

363

Amino Acids

40.31

Weight (kDa)

8.68

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 147 - 328 1.9e-39 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 780
AccB1I GGYRCC 2 cut(s) 41, 918
AccI GTMKAC 1 cut(s) 671
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 2 cut(s) 188, 294
AclWI GGATC 2 cut(s) 619, 808
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 571, 754
AcuI CTGAAG 1 cut(s) 258
AcvI CACGTG 1 cut(s) 986
AcyI GRCGYC 2 cut(s) 256, 919
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 2 cut(s) 69, 70
AflIII ACRYGT 2 cut(s) 225, 813
AgsI TTSAA 3 cut(s) 94, 310, 935
AloI GAACNNNNNNTCC 2 cut(s) 412, 444
AluBI AGCT 8 cut(s) 90, 104, 505, 865, 947, 1040, 1052, 1073
AluI AGCT 8 cut(s) 90, 104, 505, 865, 947, 1040, 1052, 1073
Alw26I GTCTC 2 cut(s) 79, 406
AlwI GGATC 2 cut(s) 619, 808
AlwNI CAGNNNCTG 1 cut(s) 500
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 5 cut(s) 3, 352, 690, 825, 1061
ApaI GGGCCC 1 cut(s) 356
ApeKI GCWGC 4 cut(s) 704, 748, 865, 1070
ApoI RAATTY 2 cut(s) 571, 754
AspLEI GCGC 2 cut(s) 921, 1058
AspS9I GGNCC 4 cut(s) 118, 352, 353, 1061
AsuHPI GGTGA 1 cut(s) 69
AvaII GGWCC 1 cut(s) 118
AxyI CCTNAGG 1 cut(s) 780
BaeGI GKGCMC 1 cut(s) 356
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 41, 918
BanII GRGCYC 1 cut(s) 356
BarI GAAGNNNNNNTAC 2 cut(s) 489, 521
BbrPI CACGTG 1 cut(s) 986
BbvI GCAGC 4 cut(s) 716, 760, 852, 1082
BccI CCATC 4 cut(s) 152, 160, 592, 1084
BciVI GTATCC 1 cut(s) 398
BcoDI GTCTC 2 cut(s) 79, 406
BfmI CTRYAG 1 cut(s) 948
BfoI RGCGCY 1 cut(s) 922
BfuAI ACCTGC 1 cut(s) 780
BfuI GTATCC 1 cut(s) 398
BglII AGATCT 1 cut(s) 48
BisI GCNGC 5 cut(s) 188, 705, 749, 866, 1071
BlsI GCNGC 5 cut(s) 189, 706, 750, 867, 1072
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 4 cut(s) 118, 352, 353, 1061
BmiI GGNNCC 3 cut(s) 43, 354, 920
BmsI GCATC 3 cut(s) 445, 829, 1011
BoxI GACNNNNGTC 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 1050
BsaAI YACGTR 1 cut(s) 986
BsaHI GRCGYC 2 cut(s) 256, 919
BsaI GGTCTC 2 cut(s) 79, 406
BsaJI CCNNGG 3 cut(s) 108, 828, 891
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 70
Bse1I ACTGG 2 cut(s) 259, 840
Bse21I CCTNAGG 1 cut(s) 780
Bse3DI GCAATG 1 cut(s) 633
BseAI TCCGGA 1 cut(s) 430
BseDI CCNNGG 3 cut(s) 108, 828, 891
BseGI GGATG 6 cut(s) 290, 327, 349, 460, 844, 912
BseLI CCNNNNNNNGG 2 cut(s) 69, 70
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 3 cut(s) 492, 530, 612
BseNI ACTGG 2 cut(s) 259, 840
BseRI GAGGAG 2 cut(s) 417, 1060
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 4 cut(s) 716, 760, 852, 1082
BsgI GTGCAG 1 cut(s) 767
BshFI GGCC 5 cut(s) 5, 354, 692, 827, 1063
BshNI GGYRCC 2 cut(s) 41, 918
BsiSI CCGG 2 cut(s) 431, 916
BslI CCNNNNNNNGG 2 cut(s) 69, 70
BsmAI GTCTC 2 cut(s) 79, 406
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 5 cut(s) 5, 354, 692, 827, 1063
Bso31I GGTCTC 2 cut(s) 79, 406
Bsp120I GGGCCC 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 356
Bsp13I TCCGGA 1 cut(s) 430
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 3 cut(s) 48, 611, 800
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 2 cut(s) 188, 294
BspANI GGCC 5 cut(s) 5, 354, 692, 827, 1063
BspCNI CTCAG 3 cut(s) 493, 529, 613
BspEI TCCGGA 1 cut(s) 430
BspLI GGNNCC 3 cut(s) 43, 354, 920
BspMI ACCTGC 1 cut(s) 780
BspPI GGATC 2 cut(s) 619, 808
BspT107I GGYRCC 2 cut(s) 41, 918
BspTNI GGTCTC 2 cut(s) 79, 406
BsrDI GCAATG 1 cut(s) 633
BsrGI TGTACA 1 cut(s) 564
BsrI ACTGG 2 cut(s) 259, 840
BssECI CCNNGG 3 cut(s) 108, 828, 891
BssMI GATC 3 cut(s) 48, 611, 800
BssNAI GTATAC 1 cut(s) 672
BssNI GRCGYC 2 cut(s) 256, 919
BssT1I CCWWGG 3 cut(s) 108, 828, 891
Bst1107I GTATAC 1 cut(s) 672
Bst4CI ACNGT 1 cut(s) 676
Bst6I CTCTTC 1 cut(s) 138
BstACI GRCGYC 2 cut(s) 256, 919
BstAUI TGTACA 1 cut(s) 564
BstBAI YACGTR 1 cut(s) 986
BstC8I GCNNGC 3 cut(s) 492, 870, 1054
BstDEI CTNAG 4 cut(s) 501, 516, 621, 780
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 6 cut(s) 290, 327, 349, 460, 844, 912
BstH2I RGCGCY 1 cut(s) 922
BstHHI GCGC 2 cut(s) 921, 1058
BstKTI GATC 3 cut(s) 51, 614, 803
BstMAI GTCTC 2 cut(s) 79, 406
BstMBI GATC 3 cut(s) 48, 611, 800
BstMWI GCNNNNNNNGC 2 cut(s) 110, 487
BstNSI RCATGY 3 cut(s) 229, 385, 817
BstPAI GACNNNNGTC 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 948
BstSLI GKGCMC 1 cut(s) 356
BstV1I GCAGC 4 cut(s) 716, 760, 852, 1082
BstX2I RGATCY 2 cut(s) 48, 611
BstXI CCANNNNNNTGG 1 cut(s) 835
BstYI RGATCY 2 cut(s) 48, 611
BstZ17I GTATAC 1 cut(s) 672
Bsu36I CCTNAGG 1 cut(s) 780
BsuI GTATCC 1 cut(s) 398
BsuRI GGCC 5 cut(s) 5, 354, 692, 827, 1063
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 6 cut(s) 290, 327, 349, 460, 844, 912
BtsI GCAGTG 1 cut(s) 707
BtsIMutI CAGTG 2 cut(s) 681, 707
BveI ACCTGC 1 cut(s) 780
Cac8I GCNNGC 3 cut(s) 492, 870, 1054
CaiI CAGNNNCTG 1 cut(s) 500
CfoI GCGC 2 cut(s) 921, 1058
Cfr13I GGNCC 4 cut(s) 118, 352, 353, 1061
CseI GACGC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 565
CviAII CATG 8 cut(s) 38, 109, 226, 340, 382, 643, 688, 814
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 4 cut(s) 501, 516, 621, 780
DinI GGCGCC 1 cut(s) 920
DpnI GATC 3 cut(s) 50, 613, 802
DpnII GATC 3 cut(s) 48, 611, 800
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 283
Eco130I CCWWGG 3 cut(s) 108, 828, 891
Eco24I GRGCYC 1 cut(s) 356
Eco31I GGTCTC 2 cut(s) 79, 406
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 258
Eco72I CACGTG 1 cut(s) 986
Eco81I CCTNAGG 1 cut(s) 780
EcoO109I RGGNCCY 3 cut(s) 352, 353, 1061
EcoRI GAATTC 1 cut(s) 754
EcoT14I CCWWGG 3 cut(s) 108, 828, 891
EcoT38I GRGCYC 1 cut(s) 356
EgeI GGCGCC 1 cut(s) 920
EheI GGCGCC 1 cut(s) 920
ErhI CCWWGG 3 cut(s) 108, 828, 891
FaeI CATG 8 cut(s) 41, 112, 229, 343, 385, 646, 691, 817
FatI CATG 8 cut(s) 37, 108, 225, 339, 381, 642, 687, 813
FauNDI CATATG 1 cut(s) 628
FblI GTMKAC 1 cut(s) 671
Fnu4HI GCNGC 5 cut(s) 188, 705, 749, 866, 1071
FokI GGATG 6 cut(s) 277, 334, 356, 467, 851, 899
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 5 cut(s) 188, 705, 749, 866, 1071
GlaI GCGC 2 cut(s) 920, 1057
GluI GCNGC 5 cut(s) 188, 705, 749, 866, 1071
HaeII RGCGCY 1 cut(s) 922
HaeIII GGCC 5 cut(s) 5, 354, 692, 827, 1063
HapII CCGG 2 cut(s) 431, 916
HgaI GACGC 1 cut(s) 264
HhaI GCGC 2 cut(s) 921, 1058
Hin1I GRCGYC 2 cut(s) 256, 919
Hin1II CATG 8 cut(s) 41, 112, 229, 343, 385, 646, 691, 817
Hin6I GCGC 2 cut(s) 919, 1056
HinP1I GCGC 2 cut(s) 919, 1056
HincII GTYRAC 1 cut(s) 967
HindII GTYRAC 1 cut(s) 967
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 2 cut(s) 980, 989
HpaII CCGG 2 cut(s) 431, 916
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 2 cut(s) 672, 967
Hpy188I TCNGA 5 cut(s) 84, 118, 265, 462, 616
Hpy188III TCNNGA 4 cut(s) 431, 579, 1035, 1080
Hpy8I GTNNAC 2 cut(s) 672, 967
HpyAV CCTTC 5 cut(s) 40, 44, 63, 222, 450
HpyCH4III ACNGT 1 cut(s) 676
HpyCH4IV ACGT 2 cut(s) 123, 985
HpyCH4V TGCA 6 cut(s) 251, 359, 398, 748, 842, 995
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 487
HpyF3I CTNAG 4 cut(s) 501, 516, 621, 780
HpySE526I ACGT 2 cut(s) 123, 985
Hsp92I GRCGYC 2 cut(s) 256, 919
Hsp92II CATG 8 cut(s) 41, 112, 229, 343, 385, 646, 691, 817
HspAI GCGC 2 cut(s) 919, 1056
KasI GGCGCC 1 cut(s) 918
Kpn2I TCCGGA 1 cut(s) 430
Kzo9I GATC 3 cut(s) 48, 611, 800
LmnI GCTCC 5 cut(s) 64, 430, 717, 725, 1078
Lsp1109I GCAGC 4 cut(s) 716, 760, 852, 1082
LweI GCATC 3 cut(s) 445, 829, 1011
MaeII ACGT 2 cut(s) 123, 985
MaeIII GTNAC 3 cut(s) 271, 496, 717
MalI GATC 3 cut(s) 50, 613, 802
MboI GATC 3 cut(s) 48, 611, 800
MboII GAAGA 5 cut(s) 43, 155, 251, 607, 908
MflI RGATCY 2 cut(s) 48, 611
MhlI GDGCHC 1 cut(s) 356
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 172, 301, 571, 679, 754, 900, 975, 1009
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 919
MmeI TCCRAC 3 cut(s) 243, 510, 589
MnlI CCTC 9 cut(s) 90, 161, 311, 438, 556, 616, 769, 1038, 1074
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 430
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 822
MslI CAYNNNNRTG 2 cut(s) 230, 812
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 431, 916
Mva1269I GAATGC 1 cut(s) 483
MwoI GCNNNNNNNGC 2 cut(s) 110, 487
NarI GGCGCC 1 cut(s) 919
NcoI CCATGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 628
NdeII GATC 3 cut(s) 48, 611, 800
NlaIII CATG 8 cut(s) 41, 112, 229, 343, 385, 646, 691, 817
NlaIV GGNNCC 3 cut(s) 43, 354, 920
NmuCI GTSAC 1 cut(s) 717
NspI RCATGY 3 cut(s) 229, 385, 817
PciI ACATGT 2 cut(s) 225, 813
PctI GAATGC 1 cut(s) 483
PfeI GAWTC 2 cut(s) 980, 989
PkrI GCNGC 5 cut(s) 189, 706, 750, 867, 1072
PluTI GGCGCC 1 cut(s) 922
PmaCI CACGTG 1 cut(s) 986
PmlI CACGTG 1 cut(s) 986
Ppu21I YACGTR 1 cut(s) 986
PscI ACATGT 2 cut(s) 225, 813
PshAI GACNNNNGTC 1 cut(s) 259
PsiI TTATAA 1 cut(s) 177
PspCI CACGTG 1 cut(s) 986
PspN4I GGNNCC 3 cut(s) 43, 354, 920
PspOMI GGGCCC 1 cut(s) 352
PspPI GGNCC 4 cut(s) 118, 352, 353, 1061
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 2 cut(s) 48, 611
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 2 cut(s) 230, 812
SaqAI TTAA 1 cut(s) 822
SatI GCNGC 5 cut(s) 188, 705, 749, 866, 1071
Sau3AI GATC 3 cut(s) 48, 611, 800
Sau96I GGNCC 4 cut(s) 118, 352, 353, 1061
SduI GDGCHC 1 cut(s) 356
SfaNI GCATC 3 cut(s) 445, 829, 1011
SfcI CTRYAG 1 cut(s) 948
SfoI GGCGCC 1 cut(s) 920
SinI GGWCC 1 cut(s) 118
SmiMI CAYNNNNRTG 2 cut(s) 230, 812
SmlI CTYRAG 1 cut(s) 1065
SmoI CTYRAG 1 cut(s) 1065
Sse9I AATT 8 cut(s) 172, 301, 571, 679, 754, 900, 975, 1009
SsiI CCGC 2 cut(s) 188, 294
SspDI GGCGCC 1 cut(s) 918
StyI CCWWGG 3 cut(s) 108, 828, 891
TaaI ACNGT 1 cut(s) 676
TaiI ACGT 2 cut(s) 126, 988
TaqI TCGA 1 cut(s) 548
TasI AATT 8 cut(s) 172, 301, 571, 679, 754, 900, 975, 1009
TatI WGTACW 1 cut(s) 564
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 2 cut(s) 980, 989
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TscAI CASTG 2 cut(s) 681, 714
TseFI GTSAC 1 cut(s) 717
TseI GCWGC 4 cut(s) 704, 748, 865, 1070
Tsp45I GTSAC 1 cut(s) 717
TspDTI ATGAA 5 cut(s) 26, 279, 360, 564, 662
TspGWI ACGGA 1 cut(s) 1021
TspRI CASTG 2 cut(s) 681, 714
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 2 cut(s) 571, 754
XceI RCATGY 3 cut(s) 229, 385, 817
XmiI GTMKAC 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.