assists the folding of proteins upon ATP hydrolysis
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| CLP_protease | PF00574 | 147 - 328 | 1.9e-39 | Clp protease |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 177 |
| Acc36I | ACCTGC | 1 cut(s) | 780 |
| AccB1I | GGYRCC | 2 cut(s) | 41, 918 |
| AccI | GTMKAC | 1 cut(s) | 671 |
| AccIII | TCCGGA | 1 cut(s) | 430 |
| AciI | CCGC | 2 cut(s) | 188, 294 |
| AclWI | GGATC | 2 cut(s) | 619, 808 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 2 cut(s) | 571, 754 |
| AcuI | CTGAAG | 1 cut(s) | 258 |
| AcvI | CACGTG | 1 cut(s) | 986 |
| AcyI | GRCGYC | 2 cut(s) | 256, 919 |
| AfaI | GTAC | 1 cut(s) | 566 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 69, 70 |
| AflIII | ACRYGT | 2 cut(s) | 225, 813 |
| AgsI | TTSAA | 3 cut(s) | 94, 310, 935 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 412, 444 |
| AluBI | AGCT | 8 cut(s) | 90, 104, 505, 865, 947, 1040, 1052, 1073 |
| AluI | AGCT | 8 cut(s) | 90, 104, 505, 865, 947, 1040, 1052, 1073 |
| Alw26I | GTCTC | 2 cut(s) | 79, 406 |
| AlwI | GGATC | 2 cut(s) | 619, 808 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 500 |
| Aor13HI | TCCGGA | 1 cut(s) | 430 |
| AoxI | GGCC | 5 cut(s) | 3, 352, 690, 825, 1061 |
| ApaI | GGGCCC | 1 cut(s) | 356 |
| ApeKI | GCWGC | 4 cut(s) | 704, 748, 865, 1070 |
| ApoI | RAATTY | 2 cut(s) | 571, 754 |
| AspLEI | GCGC | 2 cut(s) | 921, 1058 |
| AspS9I | GGNCC | 4 cut(s) | 118, 352, 353, 1061 |
| AsuHPI | GGTGA | 1 cut(s) | 69 |
| AvaII | GGWCC | 1 cut(s) | 118 |
| AxyI | CCTNAGG | 1 cut(s) | 780 |
| BaeGI | GKGCMC | 1 cut(s) | 356 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 2 cut(s) | 41, 918 |
| BanII | GRGCYC | 1 cut(s) | 356 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 489, 521 |
| BbrPI | CACGTG | 1 cut(s) | 986 |
| BbvI | GCAGC | 4 cut(s) | 716, 760, 852, 1082 |
| BccI | CCATC | 4 cut(s) | 152, 160, 592, 1084 |
| BciVI | GTATCC | 1 cut(s) | 398 |
| BcoDI | GTCTC | 2 cut(s) | 79, 406 |
| BfmI | CTRYAG | 1 cut(s) | 948 |
| BfoI | RGCGCY | 1 cut(s) | 922 |
| BfuAI | ACCTGC | 1 cut(s) | 780 |
| BfuI | GTATCC | 1 cut(s) | 398 |
| BglII | AGATCT | 1 cut(s) | 48 |
| BisI | GCNGC | 5 cut(s) | 188, 705, 749, 866, 1071 |
| BlsI | GCNGC | 5 cut(s) | 189, 706, 750, 867, 1072 |
| Bme18I | GGWCC | 1 cut(s) | 118 |
| BmgT120I | GGNCC | 4 cut(s) | 118, 352, 353, 1061 |
| BmiI | GGNNCC | 3 cut(s) | 43, 354, 920 |
| BmsI | GCATC | 3 cut(s) | 445, 829, 1011 |
| BoxI | GACNNNNGTC | 1 cut(s) | 259 |
| BpuEI | CTTGAG | 1 cut(s) | 1050 |
| BsaAI | YACGTR | 1 cut(s) | 986 |
| BsaHI | GRCGYC | 2 cut(s) | 256, 919 |
| BsaI | GGTCTC | 2 cut(s) | 79, 406 |
| BsaJI | CCNNGG | 3 cut(s) | 108, 828, 891 |
| BsaWI | WCCGGW | 1 cut(s) | 430 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 412, 442 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 69, 70 |
| Bse1I | ACTGG | 2 cut(s) | 259, 840 |
| Bse21I | CCTNAGG | 1 cut(s) | 780 |
| Bse3DI | GCAATG | 1 cut(s) | 633 |
| BseAI | TCCGGA | 1 cut(s) | 430 |
| BseDI | CCNNGG | 3 cut(s) | 108, 828, 891 |
| BseGI | GGATG | 6 cut(s) | 290, 327, 349, 460, 844, 912 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 69, 70 |
| BseMI | GCAATG | 1 cut(s) | 633 |
| BseMII | CTCAG | 3 cut(s) | 492, 530, 612 |
| BseNI | ACTGG | 2 cut(s) | 259, 840 |
| BseRI | GAGGAG | 2 cut(s) | 417, 1060 |
| BseSI | GKGCMC | 1 cut(s) | 356 |
| BseXI | GCAGC | 4 cut(s) | 716, 760, 852, 1082 |
| BsgI | GTGCAG | 1 cut(s) | 767 |
| BshFI | GGCC | 5 cut(s) | 5, 354, 692, 827, 1063 |
| BshNI | GGYRCC | 2 cut(s) | 41, 918 |
| BsiSI | CCGG | 2 cut(s) | 431, 916 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 69, 70 |
| BsmAI | GTCTC | 2 cut(s) | 79, 406 |
| BsmI | GAATGC | 1 cut(s) | 483 |
| BsnI | GGCC | 5 cut(s) | 5, 354, 692, 827, 1063 |
| Bso31I | GGTCTC | 2 cut(s) | 79, 406 |
| Bsp120I | GGGCCC | 1 cut(s) | 352 |
| Bsp1286I | GDGCHC | 1 cut(s) | 356 |
| Bsp13I | TCCGGA | 1 cut(s) | 430 |
| Bsp1407I | TGTACA | 1 cut(s) | 564 |
| Bsp143I | GATC | 3 cut(s) | 48, 611, 800 |
| Bsp19I | CCATGG | 1 cut(s) | 108 |
| BspACI | CCGC | 2 cut(s) | 188, 294 |
| BspANI | GGCC | 5 cut(s) | 5, 354, 692, 827, 1063 |
| BspCNI | CTCAG | 3 cut(s) | 493, 529, 613 |
| BspEI | TCCGGA | 1 cut(s) | 430 |
| BspLI | GGNNCC | 3 cut(s) | 43, 354, 920 |
| BspMI | ACCTGC | 1 cut(s) | 780 |
| BspPI | GGATC | 2 cut(s) | 619, 808 |
| BspT107I | GGYRCC | 2 cut(s) | 41, 918 |
| BspTNI | GGTCTC | 2 cut(s) | 79, 406 |
| BsrDI | GCAATG | 1 cut(s) | 633 |
| BsrGI | TGTACA | 1 cut(s) | 564 |
| BsrI | ACTGG | 2 cut(s) | 259, 840 |
| BssECI | CCNNGG | 3 cut(s) | 108, 828, 891 |
| BssMI | GATC | 3 cut(s) | 48, 611, 800 |
| BssNAI | GTATAC | 1 cut(s) | 672 |
| BssNI | GRCGYC | 2 cut(s) | 256, 919 |
| BssT1I | CCWWGG | 3 cut(s) | 108, 828, 891 |
| Bst1107I | GTATAC | 1 cut(s) | 672 |
| Bst4CI | ACNGT | 1 cut(s) | 676 |
| Bst6I | CTCTTC | 1 cut(s) | 138 |
| BstACI | GRCGYC | 2 cut(s) | 256, 919 |
| BstAUI | TGTACA | 1 cut(s) | 564 |
| BstBAI | YACGTR | 1 cut(s) | 986 |
| BstC8I | GCNNGC | 3 cut(s) | 492, 870, 1054 |
| BstDEI | CTNAG | 4 cut(s) | 501, 516, 621, 780 |
| BstDSI | CCRYGG | 1 cut(s) | 108 |
| BstF5I | GGATG | 6 cut(s) | 290, 327, 349, 460, 844, 912 |
| BstH2I | RGCGCY | 1 cut(s) | 922 |
| BstHHI | GCGC | 2 cut(s) | 921, 1058 |
| BstKTI | GATC | 3 cut(s) | 51, 614, 803 |
| BstMAI | GTCTC | 2 cut(s) | 79, 406 |
| BstMBI | GATC | 3 cut(s) | 48, 611, 800 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 110, 487 |
| BstNSI | RCATGY | 3 cut(s) | 229, 385, 817 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 259 |
| BstSFI | CTRYAG | 1 cut(s) | 948 |
| BstSLI | GKGCMC | 1 cut(s) | 356 |
| BstV1I | GCAGC | 4 cut(s) | 716, 760, 852, 1082 |
| BstX2I | RGATCY | 2 cut(s) | 48, 611 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 835 |
| BstYI | RGATCY | 2 cut(s) | 48, 611 |
| BstZ17I | GTATAC | 1 cut(s) | 672 |
| Bsu36I | CCTNAGG | 1 cut(s) | 780 |
| BsuI | GTATCC | 1 cut(s) | 398 |
| BsuRI | GGCC | 5 cut(s) | 5, 354, 692, 827, 1063 |
| BtgI | CCRYGG | 1 cut(s) | 108 |
| BtsCI | GGATG | 6 cut(s) | 290, 327, 349, 460, 844, 912 |
| BtsI | GCAGTG | 1 cut(s) | 707 |
| BtsIMutI | CAGTG | 2 cut(s) | 681, 707 |
| BveI | ACCTGC | 1 cut(s) | 780 |
| Cac8I | GCNNGC | 3 cut(s) | 492, 870, 1054 |
| CaiI | CAGNNNCTG | 1 cut(s) | 500 |
| CfoI | GCGC | 2 cut(s) | 921, 1058 |
| Cfr13I | GGNCC | 4 cut(s) | 118, 352, 353, 1061 |
| CseI | GACGC | 1 cut(s) | 264 |
| Csp6I | GTAC | 1 cut(s) | 565 |
| CviAII | CATG | 8 cut(s) | 38, 109, 226, 340, 382, 643, 688, 814 |
| CviQI | GTAC | 1 cut(s) | 565 |
| DdeI | CTNAG | 4 cut(s) | 501, 516, 621, 780 |
| DinI | GGCGCC | 1 cut(s) | 920 |
| DpnI | GATC | 3 cut(s) | 50, 613, 802 |
| DpnII | GATC | 3 cut(s) | 48, 611, 800 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 138 |
| EarI | CTCTTC | 1 cut(s) | 138 |
| EciI | GGCGGA | 1 cut(s) | 283 |
| Eco130I | CCWWGG | 3 cut(s) | 108, 828, 891 |
| Eco24I | GRGCYC | 1 cut(s) | 356 |
| Eco31I | GGTCTC | 2 cut(s) | 79, 406 |
| Eco47I | GGWCC | 1 cut(s) | 118 |
| Eco57I | CTGAAG | 1 cut(s) | 258 |
| Eco72I | CACGTG | 1 cut(s) | 986 |
| Eco81I | CCTNAGG | 1 cut(s) | 780 |
| EcoO109I | RGGNCCY | 3 cut(s) | 352, 353, 1061 |
| EcoRI | GAATTC | 1 cut(s) | 754 |
| EcoT14I | CCWWGG | 3 cut(s) | 108, 828, 891 |
| EcoT38I | GRGCYC | 1 cut(s) | 356 |
| EgeI | GGCGCC | 1 cut(s) | 920 |
| EheI | GGCGCC | 1 cut(s) | 920 |
| ErhI | CCWWGG | 3 cut(s) | 108, 828, 891 |
| FaeI | CATG | 8 cut(s) | 41, 112, 229, 343, 385, 646, 691, 817 |
| FatI | CATG | 8 cut(s) | 37, 108, 225, 339, 381, 642, 687, 813 |
| FauNDI | CATATG | 1 cut(s) | 628 |
| FblI | GTMKAC | 1 cut(s) | 671 |
| Fnu4HI | GCNGC | 5 cut(s) | 188, 705, 749, 866, 1071 |
| FokI | GGATG | 6 cut(s) | 277, 334, 356, 467, 851, 899 |
| FriOI | GRGCYC | 1 cut(s) | 356 |
| Fsp4HI | GCNGC | 5 cut(s) | 188, 705, 749, 866, 1071 |
| GlaI | GCGC | 2 cut(s) | 920, 1057 |
| GluI | GCNGC | 5 cut(s) | 188, 705, 749, 866, 1071 |
| HaeII | RGCGCY | 1 cut(s) | 922 |
| HaeIII | GGCC | 5 cut(s) | 5, 354, 692, 827, 1063 |
| HapII | CCGG | 2 cut(s) | 431, 916 |
| HgaI | GACGC | 1 cut(s) | 264 |
| HhaI | GCGC | 2 cut(s) | 921, 1058 |
| Hin1I | GRCGYC | 2 cut(s) | 256, 919 |
| Hin1II | CATG | 8 cut(s) | 41, 112, 229, 343, 385, 646, 691, 817 |
| Hin6I | GCGC | 2 cut(s) | 919, 1056 |
| HinP1I | GCGC | 2 cut(s) | 919, 1056 |
| HincII | GTYRAC | 1 cut(s) | 967 |
| HindII | GTYRAC | 1 cut(s) | 967 |
| HindIII | AAGCTT | 1 cut(s) | 88 |
| HinfI | GANTC | 2 cut(s) | 980, 989 |
| HpaII | CCGG | 2 cut(s) | 431, 916 |
| HphI | GGTGA | 1 cut(s) | 69 |
| Hpy166II | GTNNAC | 2 cut(s) | 672, 967 |
| Hpy188I | TCNGA | 5 cut(s) | 84, 118, 265, 462, 616 |
| Hpy188III | TCNNGA | 4 cut(s) | 431, 579, 1035, 1080 |
| Hpy8I | GTNNAC | 2 cut(s) | 672, 967 |
| HpyAV | CCTTC | 5 cut(s) | 40, 44, 63, 222, 450 |
| HpyCH4III | ACNGT | 1 cut(s) | 676 |
| HpyCH4IV | ACGT | 2 cut(s) | 123, 985 |
| HpyCH4V | TGCA | 6 cut(s) | 251, 359, 398, 748, 842, 995 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 110, 487 |
| HpyF3I | CTNAG | 4 cut(s) | 501, 516, 621, 780 |
| HpySE526I | ACGT | 2 cut(s) | 123, 985 |
| Hsp92I | GRCGYC | 2 cut(s) | 256, 919 |
| Hsp92II | CATG | 8 cut(s) | 41, 112, 229, 343, 385, 646, 691, 817 |
| HspAI | GCGC | 2 cut(s) | 919, 1056 |
| KasI | GGCGCC | 1 cut(s) | 918 |
| Kpn2I | TCCGGA | 1 cut(s) | 430 |
| Kzo9I | GATC | 3 cut(s) | 48, 611, 800 |
| LmnI | GCTCC | 5 cut(s) | 64, 430, 717, 725, 1078 |
| Lsp1109I | GCAGC | 4 cut(s) | 716, 760, 852, 1082 |
| LweI | GCATC | 3 cut(s) | 445, 829, 1011 |
| MaeII | ACGT | 2 cut(s) | 123, 985 |
| MaeIII | GTNAC | 3 cut(s) | 271, 496, 717 |
| MalI | GATC | 3 cut(s) | 50, 613, 802 |
| MboI | GATC | 3 cut(s) | 48, 611, 800 |
| MboII | GAAGA | 5 cut(s) | 43, 155, 251, 607, 908 |
| MflI | RGATCY | 2 cut(s) | 48, 611 |
| MhlI | GDGCHC | 1 cut(s) | 356 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 8 cut(s) | 172, 301, 571, 679, 754, 900, 975, 1009 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| Mly113I | GGCGCC | 1 cut(s) | 919 |
| MmeI | TCCRAC | 3 cut(s) | 243, 510, 589 |
| MnlI | CCTC | 9 cut(s) | 90, 161, 311, 438, 556, 616, 769, 1038, 1074 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroI | TCCGGA | 1 cut(s) | 430 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 822 |
| MslI | CAYNNNNRTG | 2 cut(s) | 230, 812 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 2 cut(s) | 431, 916 |
| Mva1269I | GAATGC | 1 cut(s) | 483 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 110, 487 |
| NarI | GGCGCC | 1 cut(s) | 919 |
| NcoI | CCATGG | 1 cut(s) | 108 |
| NdeI | CATATG | 1 cut(s) | 628 |
| NdeII | GATC | 3 cut(s) | 48, 611, 800 |
| NlaIII | CATG | 8 cut(s) | 41, 112, 229, 343, 385, 646, 691, 817 |
| NlaIV | GGNNCC | 3 cut(s) | 43, 354, 920 |
| NmuCI | GTSAC | 1 cut(s) | 717 |
| NspI | RCATGY | 3 cut(s) | 229, 385, 817 |
| PciI | ACATGT | 2 cut(s) | 225, 813 |
| PctI | GAATGC | 1 cut(s) | 483 |
| PfeI | GAWTC | 2 cut(s) | 980, 989 |
| PkrI | GCNGC | 5 cut(s) | 189, 706, 750, 867, 1072 |
| PluTI | GGCGCC | 1 cut(s) | 922 |
| PmaCI | CACGTG | 1 cut(s) | 986 |
| PmlI | CACGTG | 1 cut(s) | 986 |
| Ppu21I | YACGTR | 1 cut(s) | 986 |
| PscI | ACATGT | 2 cut(s) | 225, 813 |
| PshAI | GACNNNNGTC | 1 cut(s) | 259 |
| PsiI | TTATAA | 1 cut(s) | 177 |
| PspCI | CACGTG | 1 cut(s) | 986 |
| PspN4I | GGNNCC | 3 cut(s) | 43, 354, 920 |
| PspOMI | GGGCCC | 1 cut(s) | 352 |
| PspPI | GGNCC | 4 cut(s) | 118, 352, 353, 1061 |
| PstNI | CAGNNNCTG | 1 cut(s) | 500 |
| PsuI | RGATCY | 2 cut(s) | 48, 611 |
| RsaI | GTAC | 1 cut(s) | 566 |
| RsaNI | GTAC | 1 cut(s) | 565 |
| RseI | CAYNNNNRTG | 2 cut(s) | 230, 812 |
| SaqAI | TTAA | 1 cut(s) | 822 |
| SatI | GCNGC | 5 cut(s) | 188, 705, 749, 866, 1071 |
| Sau3AI | GATC | 3 cut(s) | 48, 611, 800 |
| Sau96I | GGNCC | 4 cut(s) | 118, 352, 353, 1061 |
| SduI | GDGCHC | 1 cut(s) | 356 |
| SfaNI | GCATC | 3 cut(s) | 445, 829, 1011 |
| SfcI | CTRYAG | 1 cut(s) | 948 |
| SfoI | GGCGCC | 1 cut(s) | 920 |
| SinI | GGWCC | 1 cut(s) | 118 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 230, 812 |
| SmlI | CTYRAG | 1 cut(s) | 1065 |
| SmoI | CTYRAG | 1 cut(s) | 1065 |
| Sse9I | AATT | 8 cut(s) | 172, 301, 571, 679, 754, 900, 975, 1009 |
| SsiI | CCGC | 2 cut(s) | 188, 294 |
| SspDI | GGCGCC | 1 cut(s) | 918 |
| StyI | CCWWGG | 3 cut(s) | 108, 828, 891 |
| TaaI | ACNGT | 1 cut(s) | 676 |
| TaiI | ACGT | 2 cut(s) | 126, 988 |
| TaqI | TCGA | 1 cut(s) | 548 |
| TasI | AATT | 8 cut(s) | 172, 301, 571, 679, 754, 900, 975, 1009 |
| TatI | WGTACW | 1 cut(s) | 564 |
| TauI | GCSGC | 1 cut(s) | 190 |
| TfiI | GAWTC | 2 cut(s) | 980, 989 |
| Tru1I | TTAA | 1 cut(s) | 822 |
| Tru9I | TTAA | 1 cut(s) | 822 |
| TscAI | CASTG | 2 cut(s) | 681, 714 |
| TseFI | GTSAC | 1 cut(s) | 717 |
| TseI | GCWGC | 4 cut(s) | 704, 748, 865, 1070 |
| Tsp45I | GTSAC | 1 cut(s) | 717 |
| TspDTI | ATGAA | 5 cut(s) | 26, 279, 360, 564, 662 |
| TspGWI | ACGGA | 1 cut(s) | 1021 |
| TspRI | CASTG | 2 cut(s) | 681, 714 |
| VpaK11BI | GGWCC | 1 cut(s) | 118 |
| XapI | RAATTY | 2 cut(s) | 571, 754 |
| XceI | RCATGY | 3 cut(s) | 229, 385, 817 |
| XmiI | GTMKAC | 1 cut(s) | 671 |