Rroxscaffold_2G00121970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000946
Physical Location & Seq
Reverse (-)
54800549 .. 54801685
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00121970.1

Sequence Viewer

Length: 285 bp
ATGCTTCGGAGGCTGCTAAAACCTAGCCGCCTGAACAGAGTGTTTCAATCATGGAGTCCGGTGCCGGCATCCTCTCTAAGTGAAGGTTTCCTCTCCACACCCGGCTGTCTGATCGTAGCCCTCCAAAGTCGGTTATTCTTGACAATCATCCATCAACATCAGGTGTTAAGTGCTATCACAGGTCGTGATGCAACTGCCCCTTACCAGAGCGATCTCACCTTGGTAAGCACAGTCCACTTGGAGGAGTCACTTGATGGTATGATTGTCAAAATGGATGTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.39

Weight (kDa)

8.0

Isoelectric Point (pI)

65.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AciI CCGC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 13
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 208
BanI GGYRCC 1 cut(s) 61
BccI CCATC 2 cut(s) 159, 248
BcnI CCSGG 1 cut(s) 102
BfaI CTAG 1 cut(s) 24
BisI GCNGC 2 cut(s) 14, 28
BlsI GCNGC 2 cut(s) 15, 29
Bme1390I CCNGG 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 2 cut(s) 77, 178
BpuMI CCSGG 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 3 cut(s) 68, 147, 280
BseLI CCNNNNNNNGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 61
BsiSI CCGG 3 cut(s) 59, 65, 102
BslI CCNNNNNNNGG 1 cut(s) 241
Bsp143I GATC 2 cut(s) 111, 211
BspACI CCGC 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 111, 211
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 3 cut(s) 68, 147, 280
BstKTI GATC 2 cut(s) 114, 214
BstMBI GATC 2 cut(s) 111, 211
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 100
BtsCI GGATG 3 cut(s) 68, 147, 280
Cac8I GCNNGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 64
CviAII CATG 1 cut(s) 51
CviJI RGCY 4 cut(s) 13, 27, 105, 119
CviKI_1 RGCY 4 cut(s) 13, 27, 105, 119
DdeI CTNAG 1 cut(s) 77
DpnI GATC 2 cut(s) 113, 213
DpnII GATC 2 cut(s) 111, 211
Eco130I CCWWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 1 cut(s) 54
FaiI YATR 2 cut(s) 52, 260
FatI CATG 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 14, 28
FokI GGATG 2 cut(s) 55, 134
Fsp4HI GCNGC 2 cut(s) 14, 28
FspBI CTAG 1 cut(s) 24
GluI GCNGC 2 cut(s) 14, 28
HapII CCGG 3 cut(s) 59, 65, 102
Hin1II CATG 1 cut(s) 54
HinfI GANTC 2 cut(s) 55, 245
HpaII CCGG 3 cut(s) 59, 65, 102
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 9, 111
Hpy188III TCNNGA 2 cut(s) 139, 185
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 1 cut(s) 54
KroI GCCGGC 1 cut(s) 64
KroNI GCCGGC 1 cut(s) 66
Kzo9I GATC 2 cut(s) 111, 211
LpnPI CCDG 7 cut(s) 44, 72, 78, 115, 146, 165, 218
LweI GCATC 2 cut(s) 77, 178
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 246
MalI GATC 2 cut(s) 113, 213
MboI GATC 2 cut(s) 111, 211
MlyI GAGTC 2 cut(s) 64, 254
MnlI CCTC 5 cut(s) 3, 82, 101, 131, 235
MroNI GCCGGC 1 cut(s) 64
MseI TTAA 1 cut(s) 167
MspI CCGG 3 cut(s) 59, 65, 102
MspR9I CCNGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 10
NaeI GCCGGC 1 cut(s) 66
NciI CCSGG 1 cut(s) 102
NdeII GATC 2 cut(s) 111, 211
NgoMIV GCCGGC 1 cut(s) 64
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 246
PdiI GCCGGC 1 cut(s) 66
PkrI GCNGC 2 cut(s) 15, 29
PleI GAGTC 2 cut(s) 63, 253
PpsI GAGTC 2 cut(s) 63, 253
PspN4I GGNNCC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 2 cut(s) 14, 28
Sau3AI GATC 2 cut(s) 111, 211
SchI GAGTC 2 cut(s) 64, 254
ScrFI CCNGG 1 cut(s) 102
SetI ASST 5 cut(s) 25, 88, 165, 184, 221
SfaNI GCATC 2 cut(s) 77, 178
SsiI CCGC 1 cut(s) 28
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 232
TauI GCSGC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 246
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.