Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000946

Physical Location & Seq

Genomic Coordinates Forward (+)

52885730 .. 52886605

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG371700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCGAGAGGTCTACGACAGGTCGTTGAAGCTGGACGACGAGCTCCGCCACCTGGACGCCATGAACGCCGAGTTGACTCTGGTCCGGAACGACATCGAGGATTTGAGCACGTCGTGGATGGAGCTCGCGATCGAGTTGAAGACGATCCAAAGAGAGATTGAGAGGGCTCGCTCTGACGAGTCGAAGCAAATCGAAGCCATTAGAGACGAAATTGAGACTTTGAAGCTGGAGATTGAGAAAGGAAGGAGTCGAGATACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

10.29

Weight (kDa)

4.67

Isoelectric Point (pI)

72.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30120 AT2G30120 AT2G30120 AT2G30120 AT2G30120 AT2G30120
fragaria_vesca	FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520 FvH4_3g39520
malus_domestica	MD03G1060200.v1.1
prunus_persica	Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1 Prupe.6G050600_v2.0.a1
pyrus_communis	pycom03g04830
rosa_chinensis	RchiOBHm_Chr5g0071291
rosa_laevigata	RLG00000009353 RLG00000017208 RLG00000036199
rosa_multiflora	Rmu_sc0006355.1_g000001 Rmu_sc0021466.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009850 Rroxscaffold_2G00121970 Rroxscaffold_3G00239150 Rroxscaffold_3G00252320
rosa_rugosa	Rorug01G0283000.1 Rorug03G0129500 Rorug05G0411200 Rorug06G0055700 Rorug06G0254400 Rorug07G0181500
rosa_samantha	Rh1AG197900 Rh1AG198000 Rh1CG183100 Rh2AG366800 Rh2BG457700 Rh2DG371700 Rh2DG467400 Rh3BG341200 Rh5AG140900 Rh5AG467400 Rh5BG330800 Rh5BG485900 Rh5CG510300 Rh5DG342100 Rh5DG342200 Rh5DG497100 Rh6AG291600 Rh7AG024400 Rh7AG045900 Rh7AG434300 Rh7AG434400 Rh7CG041500 Rh7CG453300 Rh7DG045600
rosa_wichuraiana	Rw1G005590 Rw5G043420 Rw7G006960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	12
AccII	CGCG	1 cut(s)	128
AccIII	TCCGGA	1 cut(s)	84
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	57
AdeI	CACNNNGTG	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	28, 139, 223
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	4 cut(s)	31, 43, 124, 226
AluI	AGCT	4 cut(s)	31, 43, 124, 226
Alw21I	GWGCWC	3 cut(s)	45, 110, 126
Alw26I	GTCTC	2 cut(s)	198, 209
AlwI	GGATC	1 cut(s)	139
Aor13HI	TCCGGA	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	82
BanII	GRGCYC	3 cut(s)	45, 126, 169
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	3 cut(s)	45, 110, 126
BccI	CCATC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	198, 209
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	82
BmgBI	CACGTC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	53
BoxI	GACNNNNGTC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
BseAI	TCCGGA	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	132
BsiHKAI	GWGCWC	3 cut(s)	45, 110, 126
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	198, 209
BsmBI	CGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	4 cut(s)	45, 110, 126, 169
Bsp13I	TCCGGA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	129, 144
Bsp68I	TCGCGA	1 cut(s)	128
BspACI	CCGC	1 cut(s)	46
BspEI	TCCGGA	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	128
BspPI	GGATC	1 cut(s)	139
BssMI	GATC	2 cut(s)	129, 144
BssNI	GRCGYC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	126, 169
BstF5I	GGATG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	2 cut(s)	132, 147
BstMAI	GTCTC	2 cut(s)	198, 209
BstMBI	GATC	2 cut(s)	129, 144
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	53
BstPAI	GACNNNNGTC	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	51
BstUI	CGCG	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	123
BtuMI	TCGCGA	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	126, 169
Cfr13I	GGNCC	1 cut(s)	82
CseI	GACGC	1 cut(s)	65
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	6 cut(s)	31, 43, 124, 167, 197, 226
CviKI_1	RGCY	6 cut(s)	31, 43, 124, 167, 197, 226
DpnI	GATC	2 cut(s)	131, 146
DpnII	GATC	2 cut(s)	129, 144
DraIII	CACNNNGTG	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	35
Ecl136II	GAGCTC	2 cut(s)	43, 124
Eco24I	GRGCYC	3 cut(s)	45, 126, 169
Eco47I	GGWCC	1 cut(s)	82
Eco53kI	GAGCTC	2 cut(s)	43, 124
EcoICRI	GAGCTC	2 cut(s)	43, 124
EcoRII	CCWGG	1 cut(s)	51
EcoT38I	GRGCYC	3 cut(s)	45, 126, 169
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	62, 262
FatI	CATG	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	12
FokI	GGATG	1 cut(s)	130
FriOI	GRGCYC	3 cut(s)	45, 126, 169
GsuI	CTGGAG	1 cut(s)	248
HapII	CCGG	1 cut(s)	85
HgaI	GACGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	3 cut(s)	76, 179, 247
HpaII	CCGG	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	13, 75
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	3 cut(s)	85, 127, 251
Hpy8I	GTNNAC	2 cut(s)	13, 75
Hpy99I	CGWCG	2 cut(s)	41, 115
HpyAV	CCTTC	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	64
Kpn2I	TCCGGA	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	129, 144
LmnI	GCTCC	2 cut(s)	48, 121
LpnPI	CCDG	7 cut(s)	4, 17, 38, 65, 65, 98, 212
MaeII	ACGT	1 cut(s)	110
MalI	GATC	2 cut(s)	131, 146
MboI	GATC	2 cut(s)	129, 144
MboII	GAAGA	1 cut(s)	151
MhlI	GDGCHC	4 cut(s)	45, 110, 126, 169
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	3 cut(s)	70, 188, 256
MnlI	CCTC	2 cut(s)	91, 156
MroI	TCCGGA	1 cut(s)	84
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	2 cut(s)	129, 144
NlaIII	CATG	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	94
NruI	TCGCGA	1 cut(s)	128
Ple19I	CGATCG	1 cut(s)	132
PleI	GAGTC	3 cut(s)	70, 187, 255
PpsI	GAGTC	3 cut(s)	70, 187, 255
PshAI	GACNNNNGTC	1 cut(s)	80
Psp124BI	GAGCTC	2 cut(s)	45, 126
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	82
PvuI	CGATCG	1 cut(s)	132
RruI	TCGCGA	1 cut(s)	128
SacI	GAGCTC	2 cut(s)	45, 126
Sau3AI	GATC	2 cut(s)	129, 144
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	3 cut(s)	70, 188, 256
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	4 cut(s)	45, 110, 126, 169
SetI	ASST	8 cut(s)	12, 23, 33, 45, 54, 113, 126, 228
SinI	GGWCC	1 cut(s)	82
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	1 cut(s)	46
SstI	GAGCTC	2 cut(s)	45, 126
StyD4I	CCNGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	5 cut(s)	96, 132, 182, 192, 250
TasI	AATT	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.