Rh2AG366800

Protein FLC EXPRESSOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000946
Physical Location & Seq
Forward (+)
54436006 .. 54436429
424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG366800.1

Sequence Viewer

Length: 345 bp
ATGAACGCCGAGTTGACTCTGGTCCAGAACGACATCGAGGACTTGAGCACGTCGCGGATGGAGCTCGCGACCGAGTTGAACACGATCCAAGGAGAGATTGAGAGGGCTCGCTCCGACGAGTCGAAGCAAATCGAAGCCATTAGAGACGAAATTGAGACTTTGAAGCTGGAGATTGAGAAAGGAAGTGTGAATGTCGTCACCGGATCCAATAATAACACACAAGACTGTGACCTTCATCCCGACGAAGGTGGCGATCCGTTCCGGATATTTTGTGGGGGGGAGGAGCTTGAGGCTGCTGAGGGTGAGGGTTCTGAAGTCGAAGACCCATTTAGTGGTGGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.48

Weight (kDa)

4.05

Isoelectric Point (pI)

54.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 332
AccII CGCG 2 cut(s) 55, 68
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 1 cut(s) 55
AclWI GGATC 4 cut(s) 79, 198, 211, 248
AcuI CTGAAG 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 245, 332
AgsI TTSAA 2 cut(s) 79, 163
AjiI CACGTC 1 cut(s) 51
AluBI AGCT 3 cut(s) 64, 166, 286
AluI AGCT 3 cut(s) 64, 166, 286
Alw21I GWGCWC 2 cut(s) 50, 66
Alw26I GTCTC 2 cut(s) 138, 149
AlwI GGATC 4 cut(s) 79, 198, 211, 248
Aor13HI TCCGGA 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 2 cut(s) 190, 314
AvaII GGWCC 1 cut(s) 22
BamHI GGATCC 1 cut(s) 203
BanII GRGCYC 2 cut(s) 66, 109
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 2 cut(s) 50, 66
BbvCI CCTCAGC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 280
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 138, 149
BfaI CTAG 1 cut(s) 343
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 22
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 205
BoxI GACNNNNGTC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 188
Bpu10I CCTNAGC 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 64, 308
BsaJI CCNNGG 1 cut(s) 88
BsaWI WCCGGW 2 cut(s) 200, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 332
BseAI TCCGGA 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 2 cut(s) 63, 235
BseLI CCNNNNNNNGG 2 cut(s) 245, 332
BseMII CTCAG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 280
Bsh1236I CGCG 2 cut(s) 55, 68
Bsh1285I CGRYCG 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 2 cut(s) 50, 66
BsiSI CCGG 2 cut(s) 201, 262
BslI CCNNNNNNNGG 2 cut(s) 245, 332
BsmAI GTCTC 2 cut(s) 138, 149
BsmBI CGTCTC 1 cut(s) 138
Bsp1286I GDGCHC 3 cut(s) 50, 66, 109
Bsp13I TCCGGA 1 cut(s) 261
Bsp143I GATC 3 cut(s) 84, 203, 253
Bsp68I TCGCGA 1 cut(s) 68
BspACI CCGC 1 cut(s) 55
BspCNI CTCAG 1 cut(s) 289
BspEI TCCGGA 1 cut(s) 261
BspFNI CGCG 2 cut(s) 55, 68
BspLI GGNNCC 1 cut(s) 205
BspPI GGATC 4 cut(s) 79, 198, 211, 248
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 3 cut(s) 84, 203, 253
BssT1I CCWWGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 227
BstC8I GCNNGC 2 cut(s) 66, 109
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 2 cut(s) 63, 235
BstFNI CGCG 2 cut(s) 55, 68
BstKTI GATC 3 cut(s) 87, 206, 256
BstMAI GTCTC 2 cut(s) 138, 149
BstMBI GATC 3 cut(s) 84, 203, 253
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstPAI GACNNNNGTC 1 cut(s) 20
BstUI CGCG 2 cut(s) 55, 68
BstV1I GCAGC 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 2 cut(s) 63, 235
BtuMI TCGCGA 1 cut(s) 68
Cac8I GCNNGC 2 cut(s) 66, 109
Cfr13I GGNCC 1 cut(s) 22
CviJI RGCY 6 cut(s) 64, 107, 137, 166, 286, 293
CviKI_1 RGCY 6 cut(s) 64, 107, 137, 166, 286, 293
DdeI CTNAG 1 cut(s) 297
DpnI GATC 3 cut(s) 86, 205, 255
DpnII GATC 3 cut(s) 84, 203, 253
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 88
Eco24I GRGCYC 2 cut(s) 66, 109
Eco47I GGWCC 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 333
EcoICRI GAGCTC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 88
EcoT38I GRGCYC 2 cut(s) 66, 109
ErhI CCWWGG 1 cut(s) 88
Esp3I CGTCTC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 2 cut(s) 70, 222
FriOI GRGCYC 2 cut(s) 66, 109
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 1 cut(s) 343
GluI GCNGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 188
HapII CCGG 2 cut(s) 201, 262
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 2 cut(s) 16, 119
HpaII CCGG 2 cut(s) 201, 262
HphI GGTGA 2 cut(s) 190, 314
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 2 cut(s) 115, 313
Hpy188III TCNNGA 4 cut(s) 25, 67, 239, 262
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 3 cut(s) 55, 119, 245
HpyAV CCTTC 2 cut(s) 239, 242
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 50
Kpn2I TCCGGA 1 cut(s) 261
Kzo9I GATC 3 cut(s) 84, 203, 253
LmnI GCTCC 3 cut(s) 61, 116, 283
LpnPI CCDG 5 cut(s) 5, 38, 152, 214, 275
Lsp1109I GCAGC 1 cut(s) 280
MaeI CTAG 1 cut(s) 343
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 2 cut(s) 196, 227
MalI GATC 3 cut(s) 86, 205, 255
MboI GATC 3 cut(s) 84, 203, 253
MboII GAAGA 1 cut(s) 332
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 3 cut(s) 50, 66, 109
MluCI AATT 1 cut(s) 150
MlyI GAGTC 2 cut(s) 10, 128
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 6 cut(s) 31, 96, 274, 283, 292, 298
MroI TCCGGA 1 cut(s) 261
MspI CCGG 2 cut(s) 201, 262
MvnI CGCG 2 cut(s) 55, 68
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeII GATC 3 cut(s) 84, 203, 253
NlaIV GGNNCC 1 cut(s) 205
NmeAIII GCCGAG 1 cut(s) 34
NmuCI GTSAC 2 cut(s) 196, 227
NruI TCGCGA 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 332
PkrI GCNGC 1 cut(s) 295
PleI GAGTC 2 cut(s) 10, 127
PpsI GAGTC 2 cut(s) 10, 127
PshAI GACNNNNGTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 22
PsuI RGATCY 1 cut(s) 203
RruI TCGCGA 1 cut(s) 68
SacI GAGCTC 1 cut(s) 66
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 3 cut(s) 84, 203, 253
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 2 cut(s) 10, 128
SduI GDGCHC 3 cut(s) 50, 66, 109
SetI ASST 6 cut(s) 53, 66, 168, 234, 250, 288
SinI GGWCC 1 cut(s) 22
SmlI CTYRAG 2 cut(s) 43, 287
SmoI CTYRAG 2 cut(s) 43, 287
Sse9I AATT 1 cut(s) 150
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 343
SstI GAGCTC 1 cut(s) 66
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 1 cut(s) 53
TaqI TCGA 4 cut(s) 36, 122, 132, 318
TaqII GACCGA 1 cut(s) 86
TasI AATT 1 cut(s) 150
TseFI GTSAC 2 cut(s) 196, 227
TseI GCWGC 1 cut(s) 293
Tsp45I GTSAC 2 cut(s) 196, 227
TspDTI ATGAA 2 cut(s) 17, 224
TspGWI ACGGA 1 cut(s) 246
Van91I CCANNNNNTGG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 22
XspI CTAG 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.