Rh7AG024400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000946
Physical Location & Seq
Forward (+)
1594553 .. 1594858
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG024400.1

Sequence Viewer

Length: 306 bp
ATGCTTCAGAGGCTGCTAAACCCTAGCCGCCTGAGCAGGGTATTTCAATCATGGAGTCCGGTGCCTGCCTCTTCTCTAAGTGGGGGTTTCCTCTCCACACCCCGCTGTTCGATCGCAGCCCTCCAAAGTTGTTTCTTCTCGACAATCATCCATAAACATCAATTGAGTGCTATAGAGGATTGTGATACTTGCCGGAGCGATCTCGCCTTGGAAAACACAGTTTGCTTGGAGACGACCCTTGATGGTATGACCGTCAAAATGGCTAGATTACGGCCCAAACGAGGGCGACTGGAAATGGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.29

Weight (kDa)

9.04

Isoelectric Point (pI)

71.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AciI CCGC 2 cut(s) 28, 103
AfiI CCNNNNNNNGG 3 cut(s) 37, 281, 282
AgsI TTSAA 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 224
AlwNI CAGNNNCTG 1 cut(s) 13
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 2 cut(s) 13, 116
AspS9I GGNCC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 128
BccI CCATC 1 cut(s) 236
BceAI ACGGC 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 2 cut(s) 24, 264
BfmI CTRYAG 1 cut(s) 171
BisI GCNGC 3 cut(s) 14, 28, 117
BlsI GCNGC 3 cut(s) 15, 29, 118
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 281, 282
Bse1I ACTGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 3 cut(s) 37, 281, 282
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 274
BshNI GGYRCC 1 cut(s) 61
BsiEI CGRYCG 1 cut(s) 114
BsiSI CCGG 2 cut(s) 59, 193
BslI CCNNNNNNNGG 3 cut(s) 37, 281, 282
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 274
Bsp143I GATC 2 cut(s) 111, 199
BspACI CCGC 2 cut(s) 28, 103
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 61
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 111, 199
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 220, 253
Bst6I CTCTTC 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 32, 77
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 2 cut(s) 114, 202
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 111, 199
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 2 cut(s) 10, 33
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 66
CaiI CAGNNNCTG 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 273
CviAII CATG 1 cut(s) 51
CviJI RGCY 5 cut(s) 13, 27, 119, 263, 274
CviKI_1 RGCY 5 cut(s) 13, 27, 119, 263, 274
DdeI CTNAG 2 cut(s) 32, 77
DpnI GATC 2 cut(s) 113, 201
DpnII GATC 2 cut(s) 111, 199
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 1 cut(s) 54
FaiI YATR 4 cut(s) 52, 153, 173, 248
FatI CATG 1 cut(s) 50
FauI CCCGC 1 cut(s) 110
Fnu4HI GCNGC 3 cut(s) 14, 28, 117
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 14, 28, 117
FspBI CTAG 2 cut(s) 24, 264
GluI GCNGC 3 cut(s) 14, 28, 117
HaeIII GGCC 1 cut(s) 274
HapII CCGG 2 cut(s) 59, 193
Hin1II CATG 1 cut(s) 54
HinfI GANTC 1 cut(s) 55
HpaII CCGG 2 cut(s) 59, 193
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 139
HpyCH4III ACNGT 2 cut(s) 220, 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 33
HpyF3I CTNAG 2 cut(s) 32, 77
Hsp92II CATG 1 cut(s) 54
Kzo9I GATC 2 cut(s) 111, 199
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 6 cut(s) 22, 44, 72, 78, 206, 275
Lsp1109I GCAGC 1 cut(s) 128
MaeI CTAG 2 cut(s) 24, 264
MalI GATC 2 cut(s) 113, 201
MboI GATC 2 cut(s) 111, 199
MboII GAAGA 2 cut(s) 63, 127
MfeI CAATTG 1 cut(s) 161
MluCI AATT 1 cut(s) 161
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 6 cut(s) 3, 79, 101, 131, 169, 275
MspA1I CMGCKG 1 cut(s) 105
MspI CCGG 2 cut(s) 59, 193
MunI CAATTG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 10, 33
NdeII GATC 2 cut(s) 111, 199
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 277
PkrI GCNGC 3 cut(s) 15, 29, 118
Ple19I CGATCG 1 cut(s) 114
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 273
PstNI CAGNNNCTG 1 cut(s) 13
PvuI CGATCG 1 cut(s) 114
SatI GCNGC 3 cut(s) 14, 28, 117
Sau3AI GATC 2 cut(s) 111, 199
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 171
Sse9I AATT 1 cut(s) 161
SsiI CCGC 2 cut(s) 28, 103
SspMI CTAG 2 cut(s) 24, 264
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 220, 253
TaqI TCGA 2 cut(s) 110, 140
TasI AATT 1 cut(s) 161
TauI GCSGC 1 cut(s) 30
TseI GCWGC 2 cut(s) 13, 116
XspI CTAG 2 cut(s) 24, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.