Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

15186906 .. 15190029

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0181500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCCGAAACAACCATCAATTCTCAGTCAAAGAGAGTTTCTGTTGTCACGGGGGCCAACAAAGGGATTGGATTTGAGATATGCAGGCAATTAGCTTCTAATGGGGTCCAGGTAGTATTAACTGCACGGGATGTGAAGAGGGGGCAAGAAGCTGTCGAAAAGCTCAAGCTTTCTGGCTTGACTGATGTAATTTTTCATCAGCTAGATGTAACCGATGCAACTAGCATTGCTTCTTTAGCAGATTTTATCGAAATCCAGTTCGGGAAGCTTGACATATTGGTCAACAATGCAGGAGTTGGTGGATTCACAGTGATTGGAGAGAATGTAAAGAACTTAACTTTCGATTATGAACATATGTTTGGTTCAAAAGTTAGAGACCTGAATAAGTTTCTAGAGCAAACATACGAAAGTGCAGAGAAATGTCTGAAAACGAACTACTATGGAATCAAGCAAATGAGCAAAGCACTTATTCGACTTCTGCAAAAGTCTGATTCACCGAAAATGGTCAATGTCTCTTCCAACATAGGACGGTTAAAGCTTCTTACGCATCAGAAAGCAAGGGATGAGCTAGGAGATGTCGAAGGCCTCACCGAAGAGAAAGTGGACAAGGTTGTCGAGGAATTTCTGAAGGATGCGAAAGAGAATTTGGTCGAAACTAATGGCTGGCCTATAAACTTCTCTGCTTACAATGTGTCCAAGGCAGCCTTGAATGCTTACACCAGAGTTCTGGCAAAGAATCACCCCAATATTGCAATCAATGCAGTTGGTCCCGGCTACACTAGCACTGACTTGAACTTCAATCTTGGTGGCCACTCTGTTGAAGAAGGTGCAAGGGGTCCTGTTAAGCTGGCCTTGAGCCCTGAAGGAGTTTCTGGAGCACAGTCACTGCAGAATAAATCCATAGAACTTGCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

305

Amino Acids

33.2

Weight (kDa)

6.55

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	13 - 178	3.1e-27	short chain dehydrogenase
KR	PF08659	15 - 126	6.9e-08	KR domain
adh_short_C2	PF13561	18 - 102	4.2e-16	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	224 - 265	6.5e-06	short chain dehydrogenase
adh_short_C2	PF13561	225 - 270	7.2e-06	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	278, 611
AcoI	YGGCCR	2 cut(s)	3, 808
AcsI	RAATTY	2 cut(s)	620, 643
AcuI	CTGAAG	2 cut(s)	647, 882
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	5 cut(s)	366, 709, 793, 799, 821
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	4 cut(s)	342, 374, 629, 661
AluBI	AGCT	9 cut(s)	95, 152, 163, 169, 202, 268, 538, 568, 847
AluI	AGCT	9 cut(s)	95, 152, 163, 169, 202, 268, 538, 568, 847
Alw21I	GWGCWC	1 cut(s)	880
Alw26I	GTCTC	2 cut(s)	369, 517
AlwNI	CAGNNNCTG	1 cut(s)	886
AoxI	GGCC	6 cut(s)	3, 54, 583, 665, 808, 849
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	2 cut(s)	620, 643
AspS9I	GGNCC	4 cut(s)	54, 106, 767, 836
AsuC2I	CCSGG	1 cut(s)	771
AsuHPI	GGTGA	3 cut(s)	486, 580, 731
AvaII	GGWCC	3 cut(s)	106, 767, 836
BalI	TGGCCA	1 cut(s)	810
BanII	GRGCYC	1 cut(s)	860
Bbv12I	GWGCWC	1 cut(s)	880
BbvI	GCAGC	1 cut(s)	713
BccI	CCATC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	771
BcoDI	GTCTC	2 cut(s)	369, 517
BfaI	CTAG	5 cut(s)	203, 222, 392, 569, 780
BfmI	CTRYAG	1 cut(s)	887
BisI	GCNGC	1 cut(s)	702
BlsI	GCNGC	1 cut(s)	703
Bme1390I	CCNGG	2 cut(s)	110, 771
Bme18I	GGWCC	3 cut(s)	106, 767, 836
BmgT120I	GGNCC	4 cut(s)	54, 106, 767, 836
BmiI	GGNNCC	4 cut(s)	55, 107, 769, 837
BmrFI	CCNGG	2 cut(s)	110, 771
BmsI	GCATC	3 cut(s)	205, 556, 622
BpmI	CTGGAG	1 cut(s)	894
BpuEI	CTTGAG	2 cut(s)	149, 874
BpuMI	CCSGG	1 cut(s)	771
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	696
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	3 cut(s)	136, 568, 637
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	713
BsgI	GTGCAG	2 cut(s)	108, 432
BshFI	GGCC	6 cut(s)	5, 56, 585, 667, 810, 851
BsiHKAI	GWGCWC	1 cut(s)	880
BsiSI	CCGG	1 cut(s)	771
BslFI	GGGAC	1 cut(s)	753
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	2 cut(s)	369, 517
BsmFI	GGGAC	1 cut(s)	753
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	6 cut(s)	5, 56, 585, 667, 810, 851
Bso31I	GGTCTC	1 cut(s)	369
Bsp1286I	GDGCHC	2 cut(s)	860, 880
BspANI	GGCC	6 cut(s)	5, 56, 585, 667, 810, 851
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	4 cut(s)	55, 107, 769, 837
BspMAI	CTGCAG	1 cut(s)	891
BspTNI	GGTCTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	696
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	310, 531, 882
Bst6I	CTCTTC	3 cut(s)	131, 520, 588
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	3 cut(s)	86, 665, 849
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	3 cut(s)	136, 568, 637
BstMAI	GTCTC	2 cut(s)	369, 517
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 544, 710, 758, 780
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	108, 769
BstSFI	CTRYAG	1 cut(s)	887
BstV1I	GCAGC	1 cut(s)	713
BstXI	CCANNNNNNTGG	1 cut(s)	727
BsuRI	GGCC	6 cut(s)	5, 56, 585, 667, 810, 851
BtsCI	GGATG	3 cut(s)	136, 568, 637
BtsI	GCAGTG	1 cut(s)	884
BtsIMutI	CAGTG	3 cut(s)	315, 783, 884
Cac8I	GCNNGC	3 cut(s)	86, 665, 849
CaiI	CAGNNNCTG	1 cut(s)	886
Cfr13I	GGNCC	4 cut(s)	54, 106, 767, 836
CspCI	CAANNNNNGTGG	2 cut(s)	787, 822
DdeI	CTNAG	1 cut(s)	24
DrdI	GACNNNNNNGTC	2 cut(s)	278, 611
DseDI	GACNNNNNNGTC	2 cut(s)	278, 611
EaeI	YGGCCR	2 cut(s)	3, 808
Eam1104I	CTCTTC	3 cut(s)	131, 520, 588
EarI	CTCTTC	3 cut(s)	131, 520, 588
Eco130I	CCWWGG	1 cut(s)	696
Eco147I	AGGCCT	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	860
Eco31I	GGTCTC	1 cut(s)	369
Eco47I	GGWCC	3 cut(s)	106, 767, 836
Eco57I	CTGAAG	2 cut(s)	647, 882
EcoO109I	RGGNCCY	1 cut(s)	836
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	860
ErhI	CCWWGG	1 cut(s)	696
FalI	AAGNNNNNCTT	4 cut(s)	689, 721, 836, 868
FaqI	GGGAC	1 cut(s)	753
FauNDI	CATATG	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	702
FokI	GGATG	3 cut(s)	143, 575, 644
FriOI	GRGCYC	1 cut(s)	860
Fsp4HI	GCNGC	1 cut(s)	702
FspBI	CTAG	5 cut(s)	203, 222, 392, 569, 780
GluI	GCNGC	1 cut(s)	702
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	6 cut(s)	5, 56, 585, 667, 810, 851
HapII	CCGG	1 cut(s)	771
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	3 cut(s)	167, 266, 536
HinfI	GANTC	4 cut(s)	303, 444, 491, 736
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	3 cut(s)	486, 580, 731
Hpy166II	GTNNAC	2 cut(s)	283, 604
Hpy188I	TCNGA	4 cut(s)	426, 490, 552, 627
Hpy188III	TCNNGA	3 cut(s)	262, 392, 873
Hpy8I	GTNNAC	2 cut(s)	283, 604
HpyAV	CCTTC	4 cut(s)	575, 622, 818, 857
HpyCH4III	ACNGT	3 cut(s)	310, 531, 882
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 544, 710, 758, 780
HpyF3I	CTNAG	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	875
Lsp1109I	GCAGC	1 cut(s)	713
LweI	GCATC	3 cut(s)	205, 556, 622
MaeI	CTAG	5 cut(s)	203, 222, 392, 569, 780
MaeIII	GTNAC	3 cut(s)	46, 208, 882
MboII	GAAGA	4 cut(s)	148, 507, 605, 833
MhlI	GDGCHC	2 cut(s)	860, 880
MlsI	TGGCCA	1 cut(s)	810
MluCI	AATT	5 cut(s)	19, 89, 189, 620, 643
MluNI	TGGCCA	1 cut(s)	810
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	3 cut(s)	132, 596, 610
Mox20I	TGGCCA	1 cut(s)	810
MscI	TGGCCA	1 cut(s)	810
MseI	TTAA	4 cut(s)	119, 335, 533, 843
Msp20I	TGGCCA	1 cut(s)	810
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	2 cut(s)	110, 771
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	5 cut(s)	236, 544, 710, 758, 780
NciI	CCSGG	1 cut(s)	771
NdeI	CATATG	1 cut(s)	354
NlaIV	GGNNCC	4 cut(s)	55, 107, 769, 837
NmuCI	GTSAC	2 cut(s)	46, 882
PceI	AGGCCT	1 cut(s)	585
PctI	GAATGC	1 cut(s)	715
PfeI	GAWTC	4 cut(s)	303, 444, 491, 736
PkrI	GCNGC	1 cut(s)	703
PpuMI	RGGWCCY	1 cut(s)	836
Psp5II	RGGWCCY	1 cut(s)	836
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	4 cut(s)	55, 107, 769, 837
PspPI	GGNCC	4 cut(s)	54, 106, 767, 836
PspPPI	RGGWCCY	1 cut(s)	836
PstI	CTGCAG	1 cut(s)	891
PstNI	CAGNNNCTG	1 cut(s)	886
SaqAI	TTAA	4 cut(s)	119, 335, 533, 843
SatI	GCNGC	1 cut(s)	702
Sau96I	GGNCC	4 cut(s)	54, 106, 767, 836
ScrFI	CCNGG	2 cut(s)	110, 771
SduI	GDGCHC	2 cut(s)	860, 880
SfaNI	GCATC	3 cut(s)	205, 556, 622
SfcI	CTRYAG	1 cut(s)	887
SinI	GGWCC	3 cut(s)	106, 767, 836
SmlI	CTYRAG	2 cut(s)	164, 853
SmoI	CTYRAG	2 cut(s)	164, 853
Sse9I	AATT	5 cut(s)	19, 89, 189, 620, 643
SseBI	AGGCCT	1 cut(s)	585
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	5 cut(s)	203, 222, 392, 569, 780
StuI	AGGCCT	1 cut(s)	585
StyD4I	CCNGG	2 cut(s)	108, 769
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	3 cut(s)	310, 531, 882
TaqI	TCGA	7 cut(s)	156, 249, 342, 472, 579, 615, 651
TasI	AATT	5 cut(s)	19, 89, 189, 620, 643
TfiI	GAWTC	4 cut(s)	303, 444, 491, 736
Tru1I	TTAA	4 cut(s)	119, 335, 533, 843
Tru9I	TTAA	4 cut(s)	119, 335, 533, 843
TscAI	CASTG	3 cut(s)	315, 790, 891
TseFI	GTSAC	2 cut(s)	46, 882
TseI	GCWGC	1 cut(s)	701
Tsp45I	GTSAC	2 cut(s)	46, 882
TspDTI	ATGAA	2 cut(s)	185, 363
TspRI	CASTG	3 cut(s)	315, 790, 891
VpaK11BI	GGWCC	3 cut(s)	106, 767, 836
XapI	RAATTY	2 cut(s)	620, 643
XbaI	TCTAGA	1 cut(s)	391
XspI	CTAG	5 cut(s)	203, 222, 392, 569, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.