Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8051646.1

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 561

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8051646.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 383 bp

acacaggtcccggcagtcggccgataagaagaagccccaaaaagattcgaagaagcaaaaccccaaggcattcgctttcagctcaactgtcaaagccaagcgtctccagtctcgtgccgtcgagaaagagcagcgacggcttcatgttccgaccattgatcgctcctacggcgaacagcctccttttgttgttctcgttcatggacctcccaaggttggcaagtctttgttgatcaagtcccttgtaaagcattataccaaacatgatttacggcaggtgaaaggccccattaccattgtatcagggaagcagaggcgggttcagtttgtggagtgccccaatgatatcaatggcatgattgatgccgcaaaatttgctgatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

127

Amino Acids

14.41

Weight (kDa)

10.45

Isoelectric Point (pI)

58.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	266
AciI	CCGC	2 cut(s)	317, 367
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	17, 216
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw26I	GTCTC	2 cut(s)	108, 115
AoxI	GGCC	2 cut(s)	19, 284
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	7, 204, 285
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	48
AvaII	GGWCC	2 cut(s)	7, 204
BaeGI	GKGCMC	1 cut(s)	339
BaeI	ACNNNNGTAYC	2 cut(s)	283, 316
BauI	CACGAG	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	143
BceAI	ACGGC	4 cut(s)	102, 153, 185, 288
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	2 cut(s)	108, 115
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	2 cut(s)	132, 367
BlsI	GCNGC	2 cut(s)	133, 368
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	2 cut(s)	7, 204
BmgT120I	GGNCC	3 cut(s)	7, 204, 285
BmiI	GGNNCC	2 cut(s)	9, 287
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	90
Bpu14I	TTCGAA	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	64, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 216
Bse1I	ACTGG	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	64, 211
BseLI	CCNNNNNNNGG	2 cut(s)	17, 216
BseNI	ACTGG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	339
BseX3I	CGGCCG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	21, 286
BsiEI	CGRYCG	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	17, 216
BsmAI	GTCTC	2 cut(s)	108, 115
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	69
BsnI	GGCC	2 cut(s)	21, 286
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	158, 232
BspACI	CCGC	2 cut(s)	317, 367
BspANI	GGCC	2 cut(s)	21, 286
BspLI	GGNNCC	2 cut(s)	9, 287
BspMI	ACCTGC	1 cut(s)	266
BspT104I	TTCGAA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	64, 211
BssMI	GATC	2 cut(s)	158, 232
BssSI	CACGAG	1 cut(s)	112
BssT1I	CCWWGG	2 cut(s)	64, 211
Bst2BI	CACGAG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	375
BstBI	TTCGAA	1 cut(s)	48
BstKTI	GATC	2 cut(s)	161, 235
BstMAI	GTCTC	2 cut(s)	108, 115
BstMBI	GATC	2 cut(s)	158, 232
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 169, 375
BstSCI	CCNGG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	143
BstZI	CGGCCG	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	21, 286
BveI	ACCTGC	1 cut(s)	266
Cfr13I	GGNCC	3 cut(s)	7, 204, 285
CseI	GACGC	1 cut(s)	90
CviAII	CATG	4 cut(s)	144, 201, 264, 356
CviJI	RGCY	7 cut(s)	21, 35, 82, 96, 140, 179, 286
CviKI_1	RGCY	7 cut(s)	21, 35, 82, 96, 140, 179, 286
DpnI	GATC	2 cut(s)	160, 234
DpnII	GATC	2 cut(s)	158, 232
EaeI	YGGCCR	1 cut(s)	19
EagI	CGGCCG	1 cut(s)	19
EclXI	CGGCCG	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	64, 211
Eco32I	GATATC	1 cut(s)	347
Eco47I	GGWCC	2 cut(s)	7, 204
Eco52I	CGGCCG	1 cut(s)	19
EcoO109I	RGGNCCY	2 cut(s)	7, 285
EcoRV	GATATC	1 cut(s)	347
EcoT14I	CCWWGG	2 cut(s)	64, 211
ErhI	CCWWGG	2 cut(s)	64, 211
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	4 cut(s)	147, 204, 267, 359
FaiI	YATR	5 cut(s)	145, 202, 256, 265, 357
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	4 cut(s)	143, 200, 263, 355
FauI	CCCGC	1 cut(s)	310
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	132, 367
Fsp4HI	GCNGC	2 cut(s)	132, 367
GluI	GCNGC	2 cut(s)	132, 367
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	21, 286
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	147, 204, 267, 359
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	122
Hpy99I	CGWCG	2 cut(s)	123, 139
HpyCH4III	ACNGT	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 169, 375
Hsp92II	CATG	4 cut(s)	147, 204, 267, 359
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	158, 232
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	4 cut(s)	24, 120, 261, 289
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	1 cut(s)	353
MalI	GATC	2 cut(s)	160, 234
MboI	GATC	2 cut(s)	158, 232
MboII	GAAGA	2 cut(s)	41, 62
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	1 cut(s)	372
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	3 cut(s)	190, 217, 307
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	137, 169, 375
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	2 cut(s)	158, 232
NlaIII	CATG	4 cut(s)	147, 204, 267, 359
NlaIV	GGNNCC	2 cut(s)	9, 287
NspV	TTCGAA	1 cut(s)	48
PaqCI	CACCTGC	1 cut(s)	266
PctI	GAATGC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	133, 368
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	9, 287
PspPI	GGNCC	3 cut(s)	7, 204, 285
PspPPI	RGGWCCY	1 cut(s)	7
SatI	GCNGC	2 cut(s)	132, 367
Sau3AI	GATC	2 cut(s)	158, 232
Sau96I	GGNCC	3 cut(s)	7, 204, 285
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	5 cut(s)	9, 84, 209, 217, 280
SfaNI	GCATC	1 cut(s)	353
SfuI	TTCGAA	1 cut(s)	48
SinI	GGWCC	2 cut(s)	7, 204
Sse9I	AATT	1 cut(s)	372
SsiI	CCGC	2 cut(s)	317, 367
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	2 cut(s)	64, 211
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	48, 121
TasI	AATT	1 cut(s)	372
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	1 cut(s)	45
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	132, 189
VpaK11BI	GGWCC	2 cut(s)	7, 204
XapI	RAATTY	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.