Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

38988188 .. 38999395

Gene Structure 11208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008777

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3639 bp

ATGATAGATAGTGGAAGCATGGAGCAGTCACACAAGGCGCACAGGTCCCGGCAGTCGGGTTCCAAGGCCGATAAGAAGAAGAAGCCCCAAAAAGATTCGAAGAAGCAAAACCCCAAGGCATTCGCTTTCAGCTCAACTGTCAAAGCCAAGCGTCTCCAGTCTCGTGCCGTCGAGAAAGAGCAGCGAAGACTTCATGTTCCGACCATTGATCGCTCCTACGGCGAACAGCCTCCTTTTGTTGTTCTTGTCCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACAGAAGGTTGAAGGCCCGATTACCATTGTATCAGGGAAGCAGAGGCGGGTTCAGTTTGTGGAGTGCCCCAATGATATCAATGCCATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTCCTTATAGACGGAAGCTATGGTTTTGAAATGGAAACATTTGAATTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCACAGATGCAAAGAAACTGAGGAAAACAAAGCAGCATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATATAACTCCCCCTGAAAAAATGCGGTTGAATAATAAATGTGATAGAAATGTCACACTTTATGGTTATTTGCGGGGGTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTACAGTGTCGCTGGTATGACAGGCTTAGCTGATCCGTGTCCTTTACCCTCAGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCTATGTCTGGACTTGGGGATCTCATGTATGACAAGGATGCTGTCTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAGGATGAAAAGGGGGAAGCAACGAACAAAGGAGAGCTTGAGGATGTGGGTGTGACCATGGTTAAAAGTCTTCAAAACCCAAAATATTCGCTTGATGAAAAGTTGGAGCAGAGCTTCATTAACTTTTATATCCAGAAACCTAAATTGGAATCTCAACATGATGAAAAAGATCTTGATGAATCCAGAAAACGCATTCGTATGATAGAGCCTTTAGAGGAACATCAGTTTGGGGGAACAATGAAAGCTGGGGGTTCTGGTCAAGAAAGTGATGTTGAGGATATTGACGACTCAGAATCAAAATCTTATCAGAATGATGTTGCTCGTAATGTAGCAATAACAAAAAGTGATTCTAGTGGATCTGATAGGGAAAATGGTGATGTATCAGATCAAGATGTTAACCTTAAAGATCACTTGAAGGAAGATGTTGAGTTTCATGATGGAAGGTCAAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGAGGAGTCAGAAGATGATGACGACGGTGGTGATAATGATGCAGAAAATCATACCTCTTCTGGTTCAGAGTCTTCAGAGGAAGATAGAGAAATTCATGAGACAGATGATGATGAGGGAAATATAGCAAAGTGGAAAGAGTCTTTGGCAGAACGGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCATCGGTTCCAACTAAAGCCAATGAAGAACAAGACAGTAGTGATGAGGACAGTGATGGAGATGACTTTTTTAAGCTAAAAGGAGACGGAATTAAGAAACATAGAGTAGAAGAAGGAAATTGGAATGTCGAGGACTCTTCCAAATTTACAAATCACTCAATCAAAGACTGGAATGATAAAAAGCTTATAGAGAGTGTGCGCGATCGCTTTGTCACTGGTGATTGGTCAAAGGCTGCTAAAAGAAATCAAGACACAGAGGCCACATTTGAAGATGAAGATGCTGTCTTTGGTGACTTTGAAGATATAGAAACAGGTGAGAAGCATGATGGATATCATACAAATGAGACAAGAAAATTTGCGAACAACAAGAAAGCTGGCTTAGATGAAGAGGAGGGGCGGAGGCTCAAAAAGCTTGCTCTTCGTGCCAAGTTTGATGCTCAATATCCTTTTGACACCAGAGGTTTCTTATATGAGGAGGAACCTGATGATACACATGTAAGCCAGTTTGGTCGAGCTAAAGAAAGCGGCTATGTTGACAAGCTGAAGGAGGAGATTGAACTCCGGAAACAAATGAATATAGCTGAACTCAATGACCTTGATGAGGACACCCGCTTAGAGGTCGAGGGTTTCCGGACAGGGACTTACCTTCGGTTGGAAGTTCATGATGTTCCTTATGAGATGGTTGAATATTTTAATCCCTGCCATCCTGTTTTGGTTGGAGGAATTGGTCTTGGGGAAGAAAGCACCGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTGCTAAAGACCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCTGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTACACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCCAATACTGGTGTGGTTGCTTTCCAGAATCTGTCAAACAATCAGGCAACATTTAGGATCACCGCCACGGCAGTTGTGCTTGAGTTCAACCATGCATCCCGAATAGTGAAGAAACTTAAACTAGTTGGTTATCCTTGCAAGATATTCAAGAATACAGCACTTATAAAAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCTGTTCGAACAGTCAGTGGCATCCGGGGCCAGGTGAAAAAGGCTGCAAAAGAAGAAATTGGTAACCAACCGAAAAAGAAGGGTGGACAACCAAAAGAGGGAATTGTTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTGTTTTTGCGCGCTTGGACTCAAGTTGATGTTCCTTGCTTTTACAACCCATTAACCACATCTCTGCAACCCCGTGATGTGACCTGGCGAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGAGCGCAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCAATTGAAAGGAAGCAGAGGAAGTTCAACCCACTGGTGATTCCCAAAGCAGTACAAGCAAGTCTTCCATTTAAATCAAAGCCTAAGGATACACCGAATAGAAGAAAGCAACTTCTTGAAGATAGAAGAGCTGTTGTGAGGGAGCCTCATGAACAGAAAATTCATGCTCTGCTTCAAAATCTTCGGTTAATAAAATCTGAGAAGTTAAAGAAGCGCAAGATAAAGGATGAGAAAAAAAGAAAAGAAATTGAAGCACAGAAAGCCAAAGATGAGCAGTTGTCAAGAAAGCGCCAGAGAGAAGAACGACGAGAGAGATACCGGGTGCAAGACAAAGCTCAGAAGAAAATGAGGAGACATGCGGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1213

Amino Acids

139.44

Weight (kDa)

8.55

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	239 - 312	4.1e-26	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	768 - 1045	1e-83	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2909
AarI	CACCTGC	1 cut(s)	878
Acc36I	ACCTGC	1 cut(s)	878
AccII	CGCG	2 cut(s)	1992, 3117
AccIII	TCCGGA	2 cut(s)	2352, 2421
AclWI	GGATC	4 cut(s)	926, 1026, 1447, 2810
AcsI	RAATTY	6 cut(s)	422, 485, 1677, 1934, 2144, 3429
AcuI	CTGAAG	2 cut(s)	1644, 2354
AfaI	GTAC	2 cut(s)	2693, 3324
AflII	CTTAAG	1 cut(s)	2687
AflIII	ACRYGT	1 cut(s)	2284
AhlI	ACTAGT	1 cut(s)	2866
AjnI	CCWGG	4 cut(s)	1083, 2552, 2988, 3188
AjuI	GAANNNNNNNTTGG	6 cut(s)	1211, 1243, 1293, 1325, 1712, 1744
AloI	GAACNNNNNNTCC	2 cut(s)	730, 762
Alw21I	GWGCWC	1 cut(s)	3074
Alw26I	GTCTC	7 cut(s)	158, 165, 1679, 1744, 1869, 2129, 3616
Alw44I	GTGCAC	1 cut(s)	3070
AlwI	GGATC	4 cut(s)	926, 1026, 1447, 2810
AlwNI	CAGNNNCTG	1 cut(s)	2776
Aor13HI	TCCGGA	2 cut(s)	2352, 2421
AoxI	GGCC	6 cut(s)	66, 334, 2049, 2550, 2731, 2986
ApaI	GGGCCC	1 cut(s)	2735
ApaLI	GTGCAC	1 cut(s)	3070
ApeKI	GCWGC	6 cut(s)	181, 586, 953, 970, 2024, 3002
ApoI	RAATTY	6 cut(s)	422, 485, 1677, 1934, 2144, 3429
AsiSI	GCGATCGC	1 cut(s)	1996
AspLEI	GCGC	7 cut(s)	40, 1992, 3117, 3119, 3231, 3486, 3561
AspS9I	GGNCC	6 cut(s)	45, 254, 335, 2731, 2732, 2986
AsuC2I	CCSGG	3 cut(s)	49, 2984, 3590
AsuII	TTCGAA	2 cut(s)	98, 2965
AvaII	GGWCC	2 cut(s)	45, 254
AxyI	CCTNAGG	1 cut(s)	3354
BaeGI	GKGCMC	3 cut(s)	389, 2735, 3074
BaeI	ACNNNNGTAYC	4 cut(s)	333, 366, 2271, 2304
BanII	GRGCYC	1 cut(s)	2735
BauI	CACGAG	1 cut(s)	162
BbsI	GAAGAC	4 cut(s)	193, 1145, 1650, 3326
Bbv12I	GWGCWC	1 cut(s)	3074
BbvCI	CCTCAGC	1 cut(s)	949
BbvI	GCAGC	6 cut(s)	193, 598, 940, 957, 2011, 2989
BccI	CCATC	9 cut(s)	617, 729, 1514, 1841, 2111, 2464, 2502, 2565, 2612
BceAI	ACGGC	3 cut(s)	152, 235, 2829
BciT130I	CCWGG	4 cut(s)	1085, 2554, 2990, 3190
BciVI	GTATCC	2 cut(s)	2534, 3352
BclI	TGATCA	2 cut(s)	282, 1060
BcnI	CCSGG	3 cut(s)	49, 2984, 3590
BcoDI	GTCTC	7 cut(s)	158, 165, 1679, 1744, 1869, 2129, 3616
BcuI	ACTAGT	1 cut(s)	2866
BfaI	CTAG	3 cut(s)	758, 1434, 2867
BfmI	CTRYAG	1 cut(s)	3207
BfoI	RGCGCY	1 cut(s)	3562
BfrI	CTTAAG	1 cut(s)	2687
BfuAI	ACCTGC	1 cut(s)	878
BfuI	GTATCC	2 cut(s)	2534, 3352
BglII	AGATCT	2 cut(s)	1252, 2929
BisI	GCNGC	9 cut(s)	182, 417, 587, 954, 971, 2025, 2317, 2564, 3003
BlpI	GCTNAGC	1 cut(s)	925
BlsI	GCNGC	9 cut(s)	183, 418, 588, 955, 972, 2026, 2318, 2565, 3004
Bme1390I	CCNGG	7 cut(s)	49, 1085, 2554, 2984, 2990, 3190, 3590
Bme18I	GGWCC	2 cut(s)	45, 254
BmgT120I	GGNCC	6 cut(s)	45, 254, 335, 2731, 2732, 2986
BmiI	GGNNCC	8 cut(s)	47, 61, 1800, 2271, 2732, 2733, 2987, 3414
BmrFI	CCNGG	7 cut(s)	49, 1085, 2554, 2984, 2990, 3190, 3590
BmsI	GCATC	9 cut(s)	403, 550, 1027, 1615, 2059, 2215, 2686, 2849, 2988
BpiI	GAAGAC	4 cut(s)	193, 1145, 1650, 3326
BplI	GAGNNNNNCTC	4 cut(s)	727, 759, 3400, 3432
BpmI	CTGGAG	2 cut(s)	140, 2682
Bpu10I	CCTNAGC	1 cut(s)	949
Bpu1102I	GCTNAGC	1 cut(s)	925
Bpu14I	TTCGAA	2 cut(s)	98, 2965
BpuEI	CTTGAG	3 cut(s)	1142, 2846, 3111
BpuMI	CCSGG	3 cut(s)	49, 2984, 3590
BsaBI	GATNNNNATC	1 cut(s)	2121
BsaJI	CCNNGG	8 cut(s)	63, 114, 250, 261, 508, 1140, 2811, 2983
BsaWI	WCCGGW	3 cut(s)	2352, 2421, 2537
Bse1I	ACTGG	7 cut(s)	157, 1964, 2011, 2293, 2595, 2758, 3309
Bse21I	CCTNAGG	1 cut(s)	3354
Bse3DI	GCAATG	4 cut(s)	437, 2674, 2710, 2727
Bse8I	GATNNNNATC	1 cut(s)	2121
BseAI	TCCGGA	2 cut(s)	2352, 2421
BseBI	CCWGG	4 cut(s)	1085, 2554, 2990, 3190
BseDI	CCNNGG	8 cut(s)	63, 114, 250, 261, 508, 1140, 2811, 2983
BseJI	GATNNNNATC	1 cut(s)	2121
BseMI	GCAATG	4 cut(s)	437, 2674, 2710, 2727
BseMII	CTCAG	7 cut(s)	563, 963, 1386, 2940, 3204, 3459, 3620
BseNI	ACTGG	7 cut(s)	157, 1964, 2011, 2293, 2595, 2758, 3309
BsePI	GCGCGC	1 cut(s)	3115
BseRI	GAGGAG	6 cut(s)	1604, 2195, 2279, 2354, 3235, 3634
BseSI	GKGCMC	3 cut(s)	389, 2735, 3074
BseXI	GCAGC	6 cut(s)	193, 598, 940, 957, 2011, 2989
BseYI	CCCAGC	1 cut(s)	1328
Bsh1236I	CGCG	2 cut(s)	1992, 3117
Bsh1285I	CGRYCG	1 cut(s)	1996
BshFI	GGCC	6 cut(s)	68, 336, 2051, 2552, 2733, 2988
BsiEI	CGRYCG	1 cut(s)	1996
BsiHKAI	GWGCWC	1 cut(s)	3074
BsiSI	CCGG	6 cut(s)	49, 2353, 2422, 2538, 2983, 3589
BslFI	GGGAC	3 cut(s)	31, 274, 2443
BsmAI	GTCTC	7 cut(s)	158, 165, 1679, 1744, 1869, 2129, 3616
BsmBI	CGTCTC	2 cut(s)	158, 1869
BsmFI	GGGAC	3 cut(s)	31, 274, 2443
BsmI	GAATGC	2 cut(s)	119, 1275
BsnI	GGCC	6 cut(s)	68, 336, 2051, 2552, 2733, 2988
Bsp119I	TTCGAA	2 cut(s)	98, 2965
Bsp120I	GGGCCC	1 cut(s)	2731
Bsp1286I	GDGCHC	3 cut(s)	389, 2735, 3074
Bsp13I	TCCGGA	2 cut(s)	2352, 2421
Bsp1720I	GCTNAGC	1 cut(s)	925
Bsp19I	CCATGG	3 cut(s)	250, 508, 1140
BspANI	GGCC	6 cut(s)	68, 336, 2051, 2552, 2733, 2988
BspCNI	CTCAG	7 cut(s)	564, 962, 1385, 2939, 3205, 3460, 3619
BspEI	TCCGGA	2 cut(s)	2352, 2421
BspFNI	CGCG	2 cut(s)	1992, 3117
BspHI	TCATGA	5 cut(s)	658, 1516, 1681, 2452, 3418
BspLI	GGNNCC	8 cut(s)	47, 61, 1800, 2271, 2732, 2733, 2987, 3414
BspMI	ACCTGC	1 cut(s)	878
BspPI	GGATC	4 cut(s)	926, 1026, 1447, 2810
BspQI	GCTCTTC	2 cut(s)	2214, 3391
BspT104I	TTCGAA	2 cut(s)	98, 2965
BspTI	CTTAAG	1 cut(s)	2687
BsrDI	GCAATG	4 cut(s)	437, 2674, 2710, 2727
BsrI	ACTGG	7 cut(s)	157, 1964, 2011, 2293, 2595, 2758, 3309
BssECI	CCNNGG	8 cut(s)	63, 114, 250, 261, 508, 1140, 2811, 2983
BssHII	GCGCGC	1 cut(s)	3115
BssSI	CACGAG	1 cut(s)	162
BssT1I	CCWWGG	6 cut(s)	63, 114, 250, 261, 508, 1140
Bst2BI	CACGAG	1 cut(s)	162
Bst2UI	CCWGG	4 cut(s)	1085, 2554, 2990, 3190
Bst4CI	ACNGT	7 cut(s)	139, 905, 1613, 1829, 1844, 2971, 3208
Bst6I	CTCTTC	6 cut(s)	1581, 1648, 1933, 2172, 2214, 3391
BstAFI	CTTAAG	1 cut(s)	2687
BstAPI	GCANNNNNTGC	2 cut(s)	425, 2683
BstBI	TTCGAA	2 cut(s)	98, 2965
BstC8I	GCNNGC	5 cut(s)	2167, 2205, 2550, 2684, 3117
BstDSI	CCRYGG	4 cut(s)	250, 508, 1140, 2811
BstEII	GGTNACC	1 cut(s)	3020
BstENI	CCTNNNNNAGG	1 cut(s)	2390
BstFNI	CGCG	2 cut(s)	1992, 3117
BstH2I	RGCGCY	1 cut(s)	3562
BstHHI	GCGC	7 cut(s)	40, 1992, 3117, 3119, 3231, 3486, 3561
BstMAI	GTCTC	7 cut(s)	158, 165, 1679, 1744, 1869, 2129, 3616
BstMCI	CGRYCG	1 cut(s)	1996
BstNI	CCWGG	4 cut(s)	1085, 2554, 2990, 3190
BstNSI	RCATGY	5 cut(s)	2288, 2548, 2686, 2710, 3629
BstPI	GGTNACC	1 cut(s)	3020
BstSCI	CCNGG	7 cut(s)	47, 1083, 2552, 2982, 2988, 3188, 3588
BstSFI	CTRYAG	1 cut(s)	3207
BstSLI	GKGCMC	3 cut(s)	389, 2735, 3074
BstUI	CGCG	2 cut(s)	1992, 3117
BstV1I	GCAGC	6 cut(s)	193, 598, 940, 957, 2011, 2989
BstV2I	GAAGAC	4 cut(s)	193, 1145, 1650, 3326
BstX2I	RGATCY	4 cut(s)	1018, 1252, 1439, 2929
BstYI	RGATCY	4 cut(s)	1018, 1252, 1439, 2929
Bsu36I	CCTNAGG	1 cut(s)	3354
BsuI	GTATCC	2 cut(s)	2534, 3352
BsuRI	GGCC	6 cut(s)	68, 336, 2051, 2552, 2733, 2988
BtgI	CCRYGG	4 cut(s)	250, 508, 1140, 2811
BtgZI	GCGATG	1 cut(s)	2663
BtsIMutI	CAGTG	6 cut(s)	910, 1849, 2004, 2602, 2980, 3302
BveI	ACCTGC	1 cut(s)	878
Cac8I	GCNNGC	5 cut(s)	2167, 2205, 2550, 2684, 3117
CaiI	CAGNNNCTG	1 cut(s)	2776
CciI	TCATGA	5 cut(s)	658, 1516, 1681, 2452, 3418
CfoI	GCGC	7 cut(s)	40, 1992, 3117, 3119, 3231, 3486, 3561
Cfr13I	GGNCC	6 cut(s)	45, 254, 335, 2731, 2732, 2986
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	2692, 3323
CspCI	CAANNNNNGTGG	2 cut(s)	2800, 2835
CviQI	GTAC	2 cut(s)	2692, 3323
DraI	TTTAAA	2 cut(s)	594, 3343
Eam1104I	CTCTTC	6 cut(s)	1581, 1648, 1933, 2172, 2214, 3391
EarI	CTCTTC	6 cut(s)	1581, 1648, 1933, 2172, 2214, 3391
EciI	GGCGGA	1 cut(s)	2203
Eco130I	CCWWGG	6 cut(s)	63, 114, 250, 261, 508, 1140
Eco24I	GRGCYC	1 cut(s)	2735
Eco32I	GATATC	2 cut(s)	397, 2123
Eco47I	GGWCC	2 cut(s)	45, 254
Eco57I	CTGAAG	2 cut(s)	1644, 2354
Eco81I	CCTNAGG	1 cut(s)	3354
Eco91I	GGTNACC	1 cut(s)	3020
EcoNI	CCTNNNNNAGG	1 cut(s)	2390
EcoO109I	RGGNCCY	3 cut(s)	45, 2731, 2732
EcoO65I	GGTNACC	1 cut(s)	3020
EcoRI	GAATTC	1 cut(s)	485
EcoRII	CCWGG	4 cut(s)	1083, 2552, 2988, 3188
EcoRV	GATATC	2 cut(s)	397, 2123
EcoT14I	CCWWGG	6 cut(s)	63, 114, 250, 261, 508, 1140
EcoT22I	ATGCAT	2 cut(s)	2712, 2842
EcoT38I	GRGCYC	1 cut(s)	2735
ErhI	CCWWGG	6 cut(s)	63, 114, 250, 261, 508, 1140
Esp3I	CGTCTC	2 cut(s)	158, 1869
FalI	AAGNNNNNCTT	4 cut(s)	1104, 1136, 3318, 3350
FaqI	GGGAC	3 cut(s)	31, 274, 2443
FauI	CCCGC	3 cut(s)	360, 840, 2408
FbaI	TGATCA	2 cut(s)	282, 1060
Fnu4HI	GCNGC	9 cut(s)	182, 417, 587, 954, 971, 2025, 2317, 2564, 3003
FriOI	GRGCYC	1 cut(s)	2735
Fsp4HI	GCNGC	9 cut(s)	182, 417, 587, 954, 971, 2025, 2317, 2564, 3003
FspBI	CTAG	3 cut(s)	758, 1434, 2867
GlaI	GCGC	7 cut(s)	39, 1991, 3116, 3118, 3230, 3485, 3560
GluI	GCNGC	9 cut(s)	182, 417, 587, 954, 971, 2025, 2317, 2564, 3003
GsaI	CCCAGC	1 cut(s)	1332
GsuI	CTGGAG	2 cut(s)	140, 2682
HaeII	RGCGCY	1 cut(s)	3562
HaeIII	GGCC	6 cut(s)	68, 336, 2051, 2552, 2733, 2988
HapII	CCGG	6 cut(s)	49, 2353, 2422, 2538, 2983, 3589
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	7 cut(s)	40, 1992, 3117, 3119, 3231, 3486, 3561
Hin6I	GCGC	7 cut(s)	38, 1990, 3115, 3117, 3229, 3484, 3559
HinP1I	GCGC	7 cut(s)	38, 1990, 3115, 3117, 3229, 3484, 3559
HincII	GTYRAC	3 cut(s)	1480, 2326, 3250
HindII	GTYRAC	3 cut(s)	1480, 2326, 3250
HindIII	AAGCTT	2 cut(s)	1973, 2201
HpaI	GTTAAC	2 cut(s)	1480, 3250
HpaII	CCGG	6 cut(s)	49, 2353, 2422, 2538, 2983, 3589
Hpy166II	GTNNAC	8 cut(s)	555, 1480, 2326, 2694, 2922, 3044, 3072, 3250
Hpy8I	GTNNAC	8 cut(s)	555, 1480, 2326, 2694, 2922, 3044, 3072, 3250
Hpy99I	CGWCG	3 cut(s)	173, 1613, 3579
HpyCH4III	ACNGT	7 cut(s)	139, 905, 1613, 1829, 1844, 2971, 3208
HpyCH4IV	ACGT	1 cut(s)	676
HpySE526I	ACGT	1 cut(s)	676
HspAI	GCGC	7 cut(s)	38, 1990, 3115, 3117, 3229, 3484, 3559
Kpn2I	TCCGGA	2 cut(s)	2352, 2421
Ksp22I	TGATCA	2 cut(s)	282, 1060
KspAI	GTTAAC	2 cut(s)	1480, 3250
LguI	GCTCTTC	2 cut(s)	2214, 3391
LmnI	GCTCC	6 cut(s)	22, 218, 447, 626, 1189, 3412
Lsp1109I	GCAGC	6 cut(s)	193, 598, 940, 957, 2011, 2989
LweI	GCATC	9 cut(s)	403, 550, 1027, 1615, 2059, 2215, 2686, 2849, 2988
MaeI	CTAG	3 cut(s)	758, 1434, 2867
MaeII	ACGT	1 cut(s)	676
MfeI	CAATTG	1 cut(s)	3273
MflI	RGATCY	4 cut(s)	1018, 1252, 1439, 2929
MhlI	GDGCHC	3 cut(s)	389, 2735, 3074
MlyI	GAGTC	6 cut(s)	1364, 1601, 1664, 1733, 1919, 3118
MmeI	TCCRAC	5 cut(s)	224, 1167, 1826, 2424, 2488
Mph1103I	ATGCAT	2 cut(s)	2712, 2842
MroI	TCCGGA	2 cut(s)	2352, 2421
MslI	CAYNNNNRTG	3 cut(s)	750, 1280, 2130
MspA1I	CMGCKG	1 cut(s)	953
MspCI	CTTAAG	1 cut(s)	2687
MspI	CCGG	6 cut(s)	49, 2353, 2422, 2538, 2983, 3589
MspR9I	CCNGG	7 cut(s)	49, 1085, 2554, 2984, 2990, 3190, 3590
MunI	CAATTG	1 cut(s)	3273
Mva1269I	GAATGC	2 cut(s)	119, 1275
MvaI	CCWGG	4 cut(s)	1085, 2554, 2990, 3190
MvnI	CGCG	2 cut(s)	1992, 3117
NciI	CCSGG	3 cut(s)	49, 2984, 3590
NcoI	CCATGG	3 cut(s)	250, 508, 1140
NlaIV	GGNNCC	8 cut(s)	47, 61, 1800, 2271, 2732, 2733, 2987, 3414
NmuCI	GTSAC	8 cut(s)	27, 826, 1135, 2002, 2081, 2597, 3098, 3184
NsiI	ATGCAT	2 cut(s)	2712, 2842
NspI	RCATGY	5 cut(s)	2288, 2548, 2686, 2710, 3629
NspV	TTCGAA	2 cut(s)	98, 2965
PaeI	GCATGC	1 cut(s)	2686
PagI	TCATGA	5 cut(s)	658, 1516, 1681, 2452, 3418
PaqCI	CACCTGC	1 cut(s)	878
PauI	GCGCGC	1 cut(s)	3115
PciI	ACATGT	1 cut(s)	2284
PciSI	GCTCTTC	2 cut(s)	2214, 3391
PctI	GAATGC	2 cut(s)	119, 1275
PkrI	GCNGC	9 cut(s)	183, 418, 588, 955, 972, 2026, 2318, 2565, 3004
Ple19I	CGATCG	1 cut(s)	1996
PleI	GAGTC	6 cut(s)	1364, 1600, 1663, 1732, 1919, 3118
PpsI	GAGTC	6 cut(s)	1364, 1600, 1663, 1732, 1919, 3118
PpuMI	RGGWCCY	1 cut(s)	45
PscI	ACATGT	1 cut(s)	2284
PsiI	TTATAA	1 cut(s)	2909
Psp5II	RGGWCCY	1 cut(s)	45
Psp6I	CCWGG	4 cut(s)	1083, 2552, 2988, 3188
PspEI	GGTNACC	1 cut(s)	3020
PspFI	CCCAGC	1 cut(s)	1328
PspGI	CCWGG	4 cut(s)	1083, 2552, 2988, 3188
PspN4I	GGNNCC	8 cut(s)	47, 61, 1800, 2271, 2732, 2733, 2987, 3414
PspOMI	GGGCCC	1 cut(s)	2731
PspPI	GGNCC	6 cut(s)	45, 254, 335, 2731, 2732, 2986
PspPPI	RGGWCCY	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	2776
PsuI	RGATCY	4 cut(s)	1018, 1252, 1439, 2929
PteI	GCGCGC	1 cut(s)	3115
PvuI	CGATCG	1 cut(s)	1996
PvuII	CAGCTG	1 cut(s)	953
RgaI	GCGATCGC	1 cut(s)	1996
RsaI	GTAC	2 cut(s)	2693, 3324
RsaNI	GTAC	2 cut(s)	2692, 3323
RseI	CAYNNNNRTG	3 cut(s)	750, 1280, 2130
SapI	GCTCTTC	2 cut(s)	2214, 3391
SatI	GCNGC	9 cut(s)	182, 417, 587, 954, 971, 2025, 2317, 2564, 3003
Sau96I	GGNCC	6 cut(s)	45, 254, 335, 2731, 2732, 2986
SchI	GAGTC	6 cut(s)	1364, 1601, 1664, 1733, 1919, 3118
ScrFI	CCNGG	7 cut(s)	49, 1085, 2554, 2984, 2990, 3190, 3590
SduI	GDGCHC	3 cut(s)	389, 2735, 3074
SfaAI	GCGATCGC	1 cut(s)	1996
SfaNI	GCATC	9 cut(s)	403, 550, 1027, 1615, 2059, 2215, 2686, 2849, 2988
SfcI	CTRYAG	1 cut(s)	3207
SfuI	TTCGAA	2 cut(s)	98, 2965
SgfI	GCGATCGC	1 cut(s)	1996
SinI	GGWCC	2 cut(s)	45, 254
SmiI	ATTTAAAT	1 cut(s)	3343
SmiMI	CAYNNNNRTG	3 cut(s)	750, 1280, 2130
SmlI	CTYRAG	4 cut(s)	1121, 2687, 2825, 3126
SmoI	CTYRAG	4 cut(s)	1121, 2687, 2825, 3126
SpeI	ACTAGT	1 cut(s)	2866
SphI	GCATGC	1 cut(s)	2686
SspI	AATATT	3 cut(s)	1169, 2480, 3235
SspMI	CTAG	3 cut(s)	758, 1434, 2867
StyD4I	CCNGG	7 cut(s)	47, 1083, 2552, 2982, 2988, 3188, 3588
StyI	CCWWGG	6 cut(s)	63, 114, 250, 261, 508, 1140
SwaI	ATTTAAAT	1 cut(s)	3343
TaaI	ACNGT	7 cut(s)	139, 905, 1613, 1829, 1844, 2971, 3208
TaiI	ACGT	1 cut(s)	679
TaqI	TCGA	8 cut(s)	98, 171, 1748, 1920, 2302, 2412, 2944, 2965
TatI	WGTACW	2 cut(s)	2691, 3322
TauI	GCSGC	3 cut(s)	419, 2319, 2566
TscAI	CASTG	6 cut(s)	910, 1849, 2011, 2602, 2980, 3309
TseFI	GTSAC	8 cut(s)	27, 826, 1135, 2002, 2081, 2597, 3098, 3184
TseI	GCWGC	6 cut(s)	181, 586, 953, 970, 2024, 3002
Tsp45I	GTSAC	8 cut(s)	27, 826, 1135, 2002, 2081, 2597, 3098, 3184
TspGWI	ACGGA	4 cut(s)	468, 924, 1753, 1893
TspRI	CASTG	6 cut(s)	910, 1849, 2011, 2602, 2980, 3309
Vha464I	CTTAAG	1 cut(s)	2687
VneI	GTGCAC	1 cut(s)	3070
VpaK11BI	GGWCC	2 cut(s)	45, 254
XagI	CCTNNNNNAGG	1 cut(s)	2390
XapI	RAATTY	6 cut(s)	422, 485, 1677, 1934, 2144, 3429
XceI	RCATGY	5 cut(s)	2288, 2548, 2686, 2710, 3629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2755
XspI	CTAG	3 cut(s)	758, 1434, 2867
Zsp2I	ATGCAT	2 cut(s)	2712, 2842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.