Rw0G023620

ribosome biogenesis protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01097
Physical Location & Seq
Reverse (-)
16179 .. 27221
11043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G023620.1

Sequence Viewer

Length: 3648 bp
ATGGGCATGATAGGTAGTGGAAGTATGGAGCAGTCGCACAAGGCACACAGGTCCCGGCAGTCGGCCGATAAGAAGAAGCCCCAAAAAGATTCGAAGAAGCAAAACCCCAAGCGTCTCCAGTCTCGTGCCGTCGAGAAAGAGCAGCGACGGCTCCATGTTCCGACCATTGATCGCTCCTACGGCGAACAGCCTCCTTTTGTTGTTCTCGTTCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGCAGGTGAAAGGCCCCATTACCATTGTATCAGGGAAGCAGAGGCGGGTTCAGTTTGTGGAGTGCCCCAATGATATCAATGGCATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTTCTTATAGATGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCAAAGATGCAAAGAAACTGAGGAAAACAAAGCAGCATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATGTCACTCCCCCTGAAAAAGTGCGCTTGAATAATAAATGTGATAGAAATGTCACACTTTATGGTTATTTGCGGGGGTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTACAGTGTCGCTGGTATGACAGGCTTAGCTGATCCCTGTCCTTTACCCTCTGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCTATGTCTGGACTTGGGGATCTCCTGTATGACAAAGATGCTGTCTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAGGATGAAAAGGAGGAAGCAACGAGCAAAGGAGAGCTTGAGGATGTGGGTGCGACCATGGTTAAAAGTCTTCAAAACCCAAAATATTCGCTTGATGAAAAGTTGGAGCAGAGCTTCATTAACTTTTATATCCAGAAACCTAAATTGGAATCTCAACATGATGAAAAAGATCTTGATGAATCCAGAAAACGCATTCGTATGATAGAGCCTTTAGAGGAACATCAGTTTGGGGAAACAATGAAAGCTGGGGGTTCTGGTCAAGAAAGTAATGTTGATGATATTGATGGCTCAGAATCAAAATCTTATCAGAATGATGCTGCTCGTAATGTTGCACTAACAAAAAGTGATTCTAGTGGATCTGATAGAGAAAATGGTGATGTATCAGATCAAGATGTTAACCTTAAAGATCACTTGAAGGAACATGTTGAGTTTCATGATGGAAGGTCAAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGAGGAGTCAGAAGATGATGACGACGGTGGTGATAATGATGCAGATAATCATACCTCTTCTGGTTCAGAGTACTCAGAGGAAGATAGAGAAATCGATGAGACAGATGATGATGTGGGAAACATAGCAAAGTGGAAGGAGTCTTTGGCAGAACGGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCATCGGTTTCAACTAAAGCCAATGAAGAACAAGACAGTAGTGAGGAGGAAAGTGATGGAGATGACTTTTTTAAGCCAAAAGGAGACGGAATTAAGAAGCATAGAGTAGAAGCAGAAAATTGGAATGTTGAGGATTCTTCCAAATTTACAAATCATTCAATCAAGGACTGGAATGATAAAAAGCTTATAGAGAGTGTGCGCGATCGCTTTGTCACTGGTGATTGGTCGAAGGCTGCTAAAAGAAATCAAGACACAGAGGCGACATTTGAAGATGAAGATGCTGTCTTTGGTGACTTTGAAGATTTAGAAACCGGTGAGAGGCATGATGGATATCATACAAATGAGACGAGAAAAGTTGCAAACAACAAGAAAGCTGGCTTAGATGAAGAGGAGCGGAGGCTCAAAAAGCTTGCTCTTCGTGCCAAGTTTGATGCTCAATATCCTTTTGACACCAAAGACGGAATTTCTTTTGTGACCTTAATATTATCTACATATGATGAACCTGATACAAGTGAGGAGGAACCTGATGATACACATGTAAGCCAGTTTGGACGAGATCGAGCTAAAGAAAGCGGCTATGTTGATAAGCTGAAGGAGGAGATTGAACTCCGGAAACAAATGAATATAGCCGAACTCAATGACCTTGATGAGGACACCCGATTAGAGGTTGAGGGTTTCCGGACAGGGACTTACCTTCGGTTGGAAGTTCATGATGTTCCTTATGAGATGGTTGAATATTTTGATCCCTGCCAGCCTGTTTTGGTTGGAGGAATTGGTCTTGGGGAAGAAAGCACTGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTGCTAAAGTCCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCTGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTATACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCCAATACTGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGCAACATTTAGGATCACCGCCACGGCAGTTGTGCTTGAGTTCAACCATGCATCGCGAATAGTGAAGAAACTCAAACTAGTTGGTTACCCTTGCAAGATATTCAAGAATACAGCACTTATAAAAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCTGTTCGAACAGTCAGTGGCATCCGGGGGCAGGTGAAAAAGGCTGCAAAAGAAGAAATTGGTAACCAACCGAAAAAGAAGGGTGGACAACCAAAAGAAGGAATTGTTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTGTTTTTGCGCGCTTGGACTCAAGTTGATGTTCCTTGCTTTTACAACCCATTAACCACATCTCTGCAACCACGAGCTCTGACCTGGCGAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGAACGCAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCGATTGAAAGGAAGCAGAGGAAGTTCAACCCACTGGTGATTCCCAAAGCAGTACAAGCAAGTCTTCCATTTAAATCAAAGCCTAAGGATACACCGAATAGAAGAAAGCAACTTCTTGAGGATAGAAGAGCTGTTGTGAGGGAGCCTCATGAACAGAAAATTCATGCTCTGCTTCAAAATCTTCGGTTAATCAAATATGAGAAGTTAAAGAAGCGCAAGATGAAGGATGAGAAAAAAAGAAAAGAAATTGAAGCACAGAAAGCCAAAGATGAGCAGTTGACAAGAAAGCGCCAGAGAGAAGAACGACGAGAGAGATACCGGGTGCAAGACAAAGCTCAGAAGAAAATGAGGAGACACGCGGAAGACTGA

Protein Analysis

1215

Amino Acids

139.84

Weight (kDa)

8.34

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AARP2CN PF08142 226 - 299 3.1e-26 AARP2CN (NUC121) domain
RIBIOP_C PF04950 755 - 1048 2.8e-84 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2918
AarI CACCTGC 3 cut(s) 277, 839, 2989
Acc36I ACCTGC 3 cut(s) 277, 839, 2989
AccBSI CCGCTC 1 cut(s) 2146
AccI GTMKAC 1 cut(s) 2702
AccII CGCG 4 cut(s) 1953, 2854, 3126, 3638
AccIII TCCGGA 2 cut(s) 2361, 2430
AciI CCGC 8 cut(s) 328, 378, 808, 2146, 2325, 2572, 2817, 3638
AclWI GGATC 5 cut(s) 887, 987, 1408, 2489, 2819
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 5 cut(s) 383, 1895, 2214, 2782, 3438
AcuI CTGAAG 1 cut(s) 2363
AfaI GTAC 2 cut(s) 1619, 3333
AflII CTTAAG 1 cut(s) 2696
AflIII ACRYGT 2 cut(s) 1465, 2287
AgeI ACCGGT 1 cut(s) 2063
AhlI ACTAGT 1 cut(s) 2875
AjnI CCWGG 3 cut(s) 1044, 2561, 3197
AjuI GAANNNNNNNTTGG 6 cut(s) 1172, 1204, 1254, 1286, 1673, 1705
AloI GAACNNNNNNTCC 2 cut(s) 691, 723
Alw21I GWGCWC 2 cut(s) 3083, 3193
Alw26I GTCTC 7 cut(s) 119, 126, 1640, 1705, 1830, 2090, 3625
Alw44I GTGCAC 1 cut(s) 3079
AlwI GGATC 5 cut(s) 887, 987, 1408, 2489, 2819
Aor13HI TCCGGA 2 cut(s) 2361, 2430
AoxI GGCC 4 cut(s) 63, 295, 2559, 2740
ApaI GGGCCC 1 cut(s) 2744
ApaLI GTGCAC 1 cut(s) 3079
ApeKI GCWGC 7 cut(s) 142, 547, 914, 931, 1361, 1985, 3011
ApoI RAATTY 5 cut(s) 383, 1895, 2214, 2782, 3438
ArsI GACNNNNNNTTYG 2 cut(s) 987, 1019
AsiGI ACCGGT 1 cut(s) 2063
AsiSI GCGATCGC 1 cut(s) 1957
AspLEI GCGC 6 cut(s) 762, 1953, 3126, 3128, 3495, 3570
AspS9I GGNCC 5 cut(s) 51, 215, 296, 2740, 2741
AsuC2I CCSGG 3 cut(s) 55, 2993, 3599
AsuII TTCGAA 2 cut(s) 92, 2974
AvaII GGWCC 2 cut(s) 51, 215
AxyI CCTNAGG 1 cut(s) 3363
BaeGI GKGCMC 3 cut(s) 350, 2744, 3083
BaeI ACNNNNGTAYC 4 cut(s) 294, 327, 2274, 2307
BanII GRGCYC 2 cut(s) 2744, 3193
BauI CACGAG 2 cut(s) 123, 3186
BbsI GAAGAC 2 cut(s) 1106, 3335
Bbv12I GWGCWC 2 cut(s) 3083, 3193
BbvI GCAGC 7 cut(s) 154, 559, 901, 918, 1348, 1972, 2998
BceAI ACGGC 5 cut(s) 113, 164, 196, 299, 2838
BciT130I CCWGG 3 cut(s) 1046, 2563, 3199
BciVI GTATCC 2 cut(s) 2543, 3361
BclI TGATCA 2 cut(s) 243, 1021
BcnI CCSGG 3 cut(s) 55, 2993, 3599
BcoDI GTCTC 7 cut(s) 119, 126, 1640, 1705, 1830, 2090, 3625
BcuI ACTAGT 1 cut(s) 2875
BfaI CTAG 3 cut(s) 719, 1395, 2876
BfmI CTRYAG 1 cut(s) 3216
BfoI RGCGCY 1 cut(s) 3571
BfrI CTTAAG 1 cut(s) 2696
BfuAI ACCTGC 3 cut(s) 277, 839, 2989
BfuI GTATCC 2 cut(s) 2543, 3361
BglII AGATCT 2 cut(s) 1213, 2938
BlpI GCTNAGC 1 cut(s) 886
BmcAI AGTACT 1 cut(s) 1619
Bme1390I CCNGG 6 cut(s) 55, 1046, 2563, 2993, 3199, 3599
Bme18I GGWCC 2 cut(s) 51, 215
BmgT120I GGNCC 5 cut(s) 51, 215, 296, 2740, 2741
BmiI GGNNCC 7 cut(s) 53, 152, 298, 2274, 2741, 2742, 3423
BmrFI CCNGG 6 cut(s) 55, 1046, 2563, 2993, 3199, 3599
BpiI GAAGAC 2 cut(s) 1106, 3335
BplI GAGNNNNNCTC 4 cut(s) 688, 720, 3409, 3441
BpmI CTGGAG 2 cut(s) 101, 2691
Bpu1102I GCTNAGC 1 cut(s) 886
Bpu14I TTCGAA 2 cut(s) 92, 2974
BpuEI CTTGAG 4 cut(s) 1103, 2855, 3120, 3416
BpuMI CCSGG 3 cut(s) 55, 2993, 3599
Bsa29I ATCGAT 1 cut(s) 1641
BsaBI GATNNNNATC 1 cut(s) 2082
BsaJI CCNNGG 5 cut(s) 222, 469, 1101, 2820, 2992
BsaWI WCCGGW 3 cut(s) 2063, 2361, 2430
Bse118I RCCGGY 1 cut(s) 2063
Bse1I ACTGG 8 cut(s) 118, 1925, 1972, 2296, 2551, 2604, 2767, 3318
Bse21I CCTNAGG 1 cut(s) 3363
Bse3DI GCAATG 4 cut(s) 398, 2683, 2719, 2736
Bse8I GATNNNNATC 1 cut(s) 2082
BseAI TCCGGA 2 cut(s) 2361, 2430
BseBI CCWGG 3 cut(s) 1046, 2563, 3199
BseCI ATCGAT 1 cut(s) 1641
BseDI CCNNGG 5 cut(s) 222, 469, 1101, 2820, 2992
BseGI GGATG 7 cut(s) 682, 706, 1054, 1093, 2988, 3213, 3511
BseJI GATNNNNATC 1 cut(s) 2082
BseMI GCAATG 4 cut(s) 398, 2683, 2719, 2736
BseMII CTCAG 6 cut(s) 524, 1347, 1635, 2949, 3213, 3629
BseNI ACTGG 8 cut(s) 118, 1925, 1972, 2296, 2551, 2604, 2767, 3318
BsePI GCGCGC 1 cut(s) 3124
BseRI GAGGAG 7 cut(s) 1565, 1811, 2156, 2282, 2363, 3244, 3643
BseSI GKGCMC 3 cut(s) 350, 2744, 3083
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 7 cut(s) 154, 559, 901, 918, 1348, 1972, 2998
BseYI CCCAGC 1 cut(s) 1289
Bsh1236I CGCG 4 cut(s) 1953, 2854, 3126, 3638
Bsh1285I CGRYCG 2 cut(s) 66, 1957
BshFI GGCC 4 cut(s) 65, 297, 2561, 2742
BshTI ACCGGT 1 cut(s) 2063
BshVI ATCGAT 1 cut(s) 1641
BsiEI CGRYCG 2 cut(s) 66, 1957
BsiHKAI GWGCWC 2 cut(s) 3083, 3193
BsiSI CCGG 6 cut(s) 55, 2064, 2362, 2431, 2992, 3598
BslFI GGGAC 3 cut(s) 37, 235, 2452
BsmAI GTCTC 7 cut(s) 119, 126, 1640, 1705, 1830, 2090, 3625
BsmBI CGTCTC 3 cut(s) 119, 1830, 2090
BsmFI GGGAC 3 cut(s) 37, 235, 2452
BsmI GAATGC 1 cut(s) 1236
BsnI GGCC 4 cut(s) 65, 297, 2561, 2742
Bsp119I TTCGAA 2 cut(s) 92, 2974
Bsp120I GGGCCC 1 cut(s) 2740
Bsp1286I GDGCHC 4 cut(s) 350, 2744, 3083, 3193
Bsp13I TCCGGA 2 cut(s) 2361, 2430
Bsp1720I GCTNAGC 1 cut(s) 886
Bsp19I CCATGG 2 cut(s) 469, 1101
Bsp68I TCGCGA 1 cut(s) 2854
BspACI CCGC 8 cut(s) 328, 378, 808, 2146, 2325, 2572, 2817, 3638
BspANI GGCC 4 cut(s) 65, 297, 2561, 2742
BspCNI CTCAG 6 cut(s) 525, 1346, 1634, 2948, 3214, 3628
BspDI ATCGAT 1 cut(s) 1641
BspEI TCCGGA 2 cut(s) 2361, 2430
BspFNI CGCG 4 cut(s) 1953, 2854, 3126, 3638
BspHI TCATGA 4 cut(s) 619, 1477, 2461, 3427
BspLI GGNNCC 7 cut(s) 53, 152, 298, 2274, 2741, 2742, 3423
BspMI ACCTGC 3 cut(s) 277, 839, 2989
BspPI GGATC 5 cut(s) 887, 987, 1408, 2489, 2819
BspQI GCTCTTC 2 cut(s) 2172, 3400
BspT104I TTCGAA 2 cut(s) 92, 2974
BspTI CTTAAG 1 cut(s) 2696
BsrBI CCGCTC 1 cut(s) 2146
BsrDI GCAATG 4 cut(s) 398, 2683, 2719, 2736
BsrFI RCCGGY 1 cut(s) 2063
BsrI ACTGG 8 cut(s) 118, 1925, 1972, 2296, 2551, 2604, 2767, 3318
BssAI RCCGGY 1 cut(s) 2063
BssECI CCNNGG 5 cut(s) 222, 469, 1101, 2820, 2992
BssHII GCGCGC 1 cut(s) 3124
BssNAI GTATAC 1 cut(s) 2703
BssSI CACGAG 2 cut(s) 123, 3186
BssT1I CCWWGG 3 cut(s) 222, 469, 1101
Bst1107I GTATAC 1 cut(s) 2703
Bst2BI CACGAG 2 cut(s) 123, 3186
Bst2UI CCWGG 3 cut(s) 1046, 2563, 3199
Bst4CI ACNGT 5 cut(s) 866, 1574, 1790, 2980, 3217
Bst6I CTCTTC 5 cut(s) 1542, 1609, 2133, 2172, 3400
BstAFI CTTAAG 1 cut(s) 2696
BstAPI GCANNNNNTGC 2 cut(s) 386, 2692
BstBI TTCGAA 2 cut(s) 92, 2974
BstC8I GCNNGC 6 cut(s) 2128, 2163, 2504, 2559, 2693, 3126
BstDEI CTNAG 9 cut(s) 533, 886, 1333, 1621, 2131, 2935, 3222, 3363, 3615
BstDSI CCRYGG 3 cut(s) 469, 1101, 2820
BstEII GGTNACC 2 cut(s) 2882, 3029
BstENI CCTNNNNNAGG 1 cut(s) 2399
BstF5I GGATG 7 cut(s) 682, 706, 1054, 1093, 2988, 3213, 3511
BstFNI CGCG 4 cut(s) 1953, 2854, 3126, 3638
BstH2I RGCGCY 1 cut(s) 3571
BstHHI GCGC 6 cut(s) 762, 1953, 3126, 3128, 3495, 3570
BstMAI GTCTC 7 cut(s) 119, 126, 1640, 1705, 1830, 2090, 3625
BstMCI CGRYCG 2 cut(s) 66, 1957
BstNI CCWGG 3 cut(s) 1046, 2563, 3199
BstNSI RCATGY 5 cut(s) 1469, 2291, 2557, 2695, 2719
BstPI GGTNACC 2 cut(s) 2882, 3029
BstSCI CCNGG 6 cut(s) 53, 1044, 2561, 2991, 3197, 3597
BstSFI CTRYAG 1 cut(s) 3216
BstSLI GKGCMC 3 cut(s) 350, 2744, 3083
BstUI CGCG 4 cut(s) 1953, 2854, 3126, 3638
BstV1I GCAGC 7 cut(s) 154, 559, 901, 918, 1348, 1972, 2998
BstV2I GAAGAC 2 cut(s) 1106, 3335
BstX2I RGATCY 4 cut(s) 979, 1213, 1400, 2938
BstYI RGATCY 4 cut(s) 979, 1213, 1400, 2938
BstZ17I GTATAC 1 cut(s) 2703
BstZI CGGCCG 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 1641
Bsu36I CCTNAGG 1 cut(s) 3363
BsuI GTATCC 2 cut(s) 2543, 3361
BsuRI GGCC 4 cut(s) 65, 297, 2561, 2742
BsuTUI ATCGAT 1 cut(s) 1641
BtgI CCRYGG 3 cut(s) 469, 1101, 2820
BtgZI GCGATG 2 cut(s) 2672, 2835
BtsCI GGATG 7 cut(s) 682, 706, 1054, 1093, 2988, 3213, 3511
BtsIMutI CAGTG 6 cut(s) 871, 1965, 2544, 2611, 2989, 3311
BtuMI TCGCGA 1 cut(s) 2854
BveI ACCTGC 3 cut(s) 277, 839, 2989
Cac8I GCNNGC 6 cut(s) 2128, 2163, 2504, 2559, 2693, 3126
CciI TCATGA 4 cut(s) 619, 1477, 2461, 3427
CfoI GCGC 6 cut(s) 762, 1953, 3126, 3128, 3495, 3570
Cfr10I RCCGGY 1 cut(s) 2063
Cfr13I GGNCC 5 cut(s) 51, 215, 296, 2740, 2741
ClaI ATCGAT 1 cut(s) 1641
CseI GACGC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 1618, 3332
CspAI ACCGGT 1 cut(s) 2063
CspCI CAANNNNNGTGG 2 cut(s) 2809, 2844
CviQI GTAC 2 cut(s) 1618, 3332
DdeI CTNAG 9 cut(s) 533, 886, 1333, 1621, 2131, 2935, 3222, 3363, 3615
DraI TTTAAA 2 cut(s) 555, 3352
EaeI YGGCCR 1 cut(s) 63
EagI CGGCCG 1 cut(s) 63
Eam1104I CTCTTC 5 cut(s) 1542, 1609, 2133, 2172, 3400
EarI CTCTTC 5 cut(s) 1542, 1609, 2133, 2172, 3400
Ecl136II GAGCTC 1 cut(s) 3191
EclXI CGGCCG 1 cut(s) 63
Eco130I CCWWGG 3 cut(s) 222, 469, 1101
Eco24I GRGCYC 2 cut(s) 2744, 3193
Eco32I GATATC 2 cut(s) 358, 2084
Eco47I GGWCC 2 cut(s) 51, 215
Eco52I CGGCCG 1 cut(s) 63
Eco53kI GAGCTC 1 cut(s) 3191
Eco57I CTGAAG 1 cut(s) 2363
Eco81I CCTNAGG 1 cut(s) 3363
Eco91I GGTNACC 2 cut(s) 2882, 3029
EcoICRI GAGCTC 1 cut(s) 3191
EcoNI CCTNNNNNAGG 1 cut(s) 2399
EcoO109I RGGNCCY 4 cut(s) 51, 296, 2740, 2741
EcoO65I GGTNACC 2 cut(s) 2882, 3029
EcoRII CCWGG 3 cut(s) 1044, 2561, 3197
EcoRV GATATC 2 cut(s) 358, 2084
EcoT14I CCWWGG 3 cut(s) 222, 469, 1101
EcoT22I ATGCAT 2 cut(s) 2721, 2851
EcoT38I GRGCYC 2 cut(s) 2744, 3193
ErhI CCWWGG 3 cut(s) 222, 469, 1101
Esp3I CGTCTC 3 cut(s) 119, 1830, 2090
FalI AAGNNNNNCTT 4 cut(s) 1065, 1097, 3327, 3359
FaqI GGGAC 3 cut(s) 37, 235, 2452
FauI CCCGC 2 cut(s) 321, 801
FauNDI CATATG 1 cut(s) 2245
FbaI TGATCA 2 cut(s) 243, 1021
FblI GTMKAC 1 cut(s) 2702
FokI GGATG 7 cut(s) 669, 693, 1061, 1100, 2975, 3220, 3518
FriOI GRGCYC 2 cut(s) 2744, 3193
FspBI CTAG 3 cut(s) 719, 1395, 2876
GlaI GCGC 6 cut(s) 761, 1952, 3125, 3127, 3494, 3569
GsaI CCCAGC 1 cut(s) 1293
GsuI CTGGAG 2 cut(s) 101, 2691
HaeII RGCGCY 1 cut(s) 3571
HaeIII GGCC 4 cut(s) 65, 297, 2561, 2742
HapII CCGG 6 cut(s) 55, 2064, 2362, 2431, 2992, 3598
HgaI GACGC 1 cut(s) 101
HhaI GCGC 6 cut(s) 762, 1953, 3126, 3128, 3495, 3570
Hin6I GCGC 6 cut(s) 760, 1951, 3124, 3126, 3493, 3568
HinP1I GCGC 6 cut(s) 760, 1951, 3124, 3126, 3493, 3568
HincII GTYRAC 3 cut(s) 1441, 3259, 3558
HindII GTYRAC 3 cut(s) 1441, 3259, 3558
HindIII AAGCTT 2 cut(s) 1934, 2159
HpaI GTTAAC 2 cut(s) 1441, 3259
HpaII CCGG 6 cut(s) 55, 2064, 2362, 2431, 2992, 3598
Hpy166II GTNNAC 7 cut(s) 1441, 2703, 2931, 3053, 3081, 3259, 3558
Hpy8I GTNNAC 7 cut(s) 1441, 2703, 2931, 3053, 3081, 3259, 3558
Hpy99I CGWCG 4 cut(s) 134, 150, 1574, 3588
HpyCH4III ACNGT 5 cut(s) 866, 1574, 1790, 2980, 3217
HpyCH4IV ACGT 1 cut(s) 637
HpyF3I CTNAG 9 cut(s) 533, 886, 1333, 1621, 2131, 2935, 3222, 3363, 3615
HpySE526I ACGT 1 cut(s) 637
HspAI GCGC 6 cut(s) 760, 1951, 3124, 3126, 3493, 3568
Kpn2I TCCGGA 2 cut(s) 2361, 2430
Ksp22I TGATCA 2 cut(s) 243, 1021
KspAI GTTAAC 2 cut(s) 1441, 3259
LguI GCTCTTC 2 cut(s) 2172, 3400
LmnI GCTCC 7 cut(s) 28, 156, 179, 587, 1150, 2143, 3421
Lsp1109I GCAGC 7 cut(s) 154, 559, 901, 918, 1348, 1972, 2998
MaeI CTAG 3 cut(s) 719, 1395, 2876
MaeII ACGT 1 cut(s) 637
MbiI CCGCTC 1 cut(s) 2146
MflI RGATCY 4 cut(s) 979, 1213, 1400, 2938
MhlI GDGCHC 4 cut(s) 350, 2744, 3083, 3193
MlyI GAGTC 3 cut(s) 1562, 1694, 3127
MmeI TCCRAC 4 cut(s) 185, 1128, 2433, 2497
Mph1103I ATGCAT 2 cut(s) 2721, 2851
MroI TCCGGA 2 cut(s) 2361, 2430
MslI CAYNNNNRTG 3 cut(s) 711, 1241, 2091
MspCI CTTAAG 1 cut(s) 2696
MspI CCGG 6 cut(s) 55, 2064, 2362, 2431, 2992, 3598
MspR9I CCNGG 6 cut(s) 55, 1046, 2563, 2993, 3199, 3599
Mva1269I GAATGC 1 cut(s) 1236
MvaI CCWGG 3 cut(s) 1046, 2563, 3199
MvnI CGCG 4 cut(s) 1953, 2854, 3126, 3638
NciI CCSGG 3 cut(s) 55, 2993, 3599
NcoI CCATGG 2 cut(s) 469, 1101
NdeI CATATG 1 cut(s) 2245
NlaIV GGNNCC 7 cut(s) 53, 152, 298, 2274, 2741, 2742, 3423
NmuCI GTSAC 7 cut(s) 739, 787, 1963, 2042, 2224, 2606, 3107
NruI TCGCGA 1 cut(s) 2854
NsiI ATGCAT 2 cut(s) 2721, 2851
NspI RCATGY 5 cut(s) 1469, 2291, 2557, 2695, 2719
NspV TTCGAA 2 cut(s) 92, 2974
PaeI GCATGC 1 cut(s) 2695
PagI TCATGA 4 cut(s) 619, 1477, 2461, 3427
PaqCI CACCTGC 3 cut(s) 277, 839, 2989
PauI GCGCGC 1 cut(s) 3124
PciI ACATGT 2 cut(s) 1465, 2287
PciSI GCTCTTC 2 cut(s) 2172, 3400
PctI GAATGC 1 cut(s) 1236
PinAI ACCGGT 1 cut(s) 2063
Ple19I CGATCG 1 cut(s) 1957
PleI GAGTC 3 cut(s) 1561, 1693, 3127
PpsI GAGTC 3 cut(s) 1561, 1693, 3127
PpuMI RGGWCCY 1 cut(s) 51
PscI ACATGT 2 cut(s) 1465, 2287
PsiI TTATAA 1 cut(s) 2918
Psp124BI GAGCTC 1 cut(s) 3193
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 1044, 2561, 3197
PspEI GGTNACC 2 cut(s) 2882, 3029
PspFI CCCAGC 1 cut(s) 1289
PspGI CCWGG 3 cut(s) 1044, 2561, 3197
PspN4I GGNNCC 7 cut(s) 53, 152, 298, 2274, 2741, 2742, 3423
PspOMI GGGCCC 1 cut(s) 2740
PspPI GGNCC 5 cut(s) 51, 215, 296, 2740, 2741
PspPPI RGGWCCY 1 cut(s) 51
PsuI RGATCY 4 cut(s) 979, 1213, 1400, 2938
PteI GCGCGC 1 cut(s) 3124
PvuI CGATCG 1 cut(s) 1957
RgaI GCGATCGC 1 cut(s) 1957
RruI TCGCGA 1 cut(s) 2854
RsaI GTAC 2 cut(s) 1619, 3333
RsaNI GTAC 2 cut(s) 1618, 3332
RseI CAYNNNNRTG 3 cut(s) 711, 1241, 2091
SacI GAGCTC 1 cut(s) 3193
SapI GCTCTTC 2 cut(s) 2172, 3400
Sau96I GGNCC 5 cut(s) 51, 215, 296, 2740, 2741
ScaI AGTACT 1 cut(s) 1619
SchI GAGTC 3 cut(s) 1562, 1694, 3127
ScrFI CCNGG 6 cut(s) 55, 1046, 2563, 2993, 3199, 3599
SduI GDGCHC 4 cut(s) 350, 2744, 3083, 3193
SfaAI GCGATCGC 1 cut(s) 1957
SfcI CTRYAG 1 cut(s) 3216
SfuI TTCGAA 2 cut(s) 92, 2974
SgfI GCGATCGC 1 cut(s) 1957
SinI GGWCC 2 cut(s) 51, 215
SmiI ATTTAAAT 1 cut(s) 3352
SmiMI CAYNNNNRTG 3 cut(s) 711, 1241, 2091
SmlI CTYRAG 5 cut(s) 1082, 2696, 2834, 3135, 3395
SmoI CTYRAG 5 cut(s) 1082, 2696, 2834, 3135, 3395
SpeI ACTAGT 1 cut(s) 2875
SphI GCATGC 1 cut(s) 2695
SsiI CCGC 8 cut(s) 328, 378, 808, 2146, 2325, 2572, 2817, 3638
SspI AATATT 4 cut(s) 1130, 2235, 2489, 3244
SspMI CTAG 3 cut(s) 719, 1395, 2876
SstI GAGCTC 1 cut(s) 3193
StyD4I CCNGG 6 cut(s) 53, 1044, 2561, 2991, 3197, 3597
StyI CCWWGG 3 cut(s) 222, 469, 1101
SwaI ATTTAAAT 1 cut(s) 3352
TaaI ACNGT 5 cut(s) 866, 1574, 1790, 2980, 3217
TaiI ACGT 1 cut(s) 640
TaqI TCGA 8 cut(s) 92, 132, 1641, 1709, 1979, 2311, 2953, 2974
TatI WGTACW 2 cut(s) 1617, 3331
TauI GCSGC 3 cut(s) 380, 2328, 2575
TscAI CASTG 6 cut(s) 871, 1972, 2551, 2611, 2989, 3318
TseFI GTSAC 7 cut(s) 739, 787, 1963, 2042, 2224, 2606, 3107
TseI GCWGC 7 cut(s) 142, 547, 914, 931, 1361, 1985, 3011
Tsp45I GTSAC 7 cut(s) 739, 787, 1963, 2042, 2224, 2606, 3107
TspGWI ACGGA 3 cut(s) 1714, 1854, 2226
TspRI CASTG 6 cut(s) 871, 1972, 2551, 2611, 2989, 3318
Vha464I CTTAAG 1 cut(s) 2696
VneI GTGCAC 1 cut(s) 3079
VpaK11BI GGWCC 2 cut(s) 51, 215
XagI CCTNNNNNAGG 1 cut(s) 2399
XapI RAATTY 5 cut(s) 383, 1895, 2214, 2782, 3438
XceI RCATGY 5 cut(s) 1469, 2291, 2557, 2695, 2719
XcmI CCANNNNNNNNNTGG 1 cut(s) 2764
XmiI GTMKAC 1 cut(s) 2702
XspI CTAG 3 cut(s) 719, 1395, 2876
ZrmI AGTACT 1 cut(s) 1619
Zsp2I ATGCAT 2 cut(s) 2721, 2851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.