Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

28812946 .. 28814211

Gene Structure 1266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGCATGATAGATAGTGGAAGTATGGAGCAGTCGCACAAGGCACACAGGTCCCGACATCGGGTTCAAAGGCCGATAAGAAGAAGCCCCAAAAAAGATTCGAAAAGGCAAAACCCCAATGCATTCGTTTTCAGCTCAACTGTCAAAGCCAAGCGTCTCCGGTCTCGTGCCGTCGAGAAAGAGCAGCAAAGACTTCATGTTCCGACCATTGATCGCTCTTACGGCGAACAACCTCCTTTTGTTGTTCTTGTTCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGGAGGTGAAAGGCCCGATTACCATTGTATCGGGAAGCGAGAGGCGGGTTCAGTTTGTGGAGTGTCCCAATGATATCAATGGTATGATTGATGCCGCAAAATTTGTTGATTTAGCATTGCTTCTTATAGATGAAAGCTATGGTTTTGAAATGGAAACATTTGATTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCAAAGATGCAAAGAAACTGAGGAAGACAAAGCAGAATTTAAAACATCTGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAAGCTGGCTCGTTTCATAATTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATGTCACTCCCCCTGAAAAAGTGCGCTTAAATAATAACTTGGCACTTTGGAAGCCACGGCTAGCGAGATGGTATTCAAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

287

Amino Acids

33.54

Weight (kDa)

10.06

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	240 - 267	9.3e-08	AARP2CN (NUC121) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	370, 420
AcsI	RAATTY	2 cut(s)	425, 592
AfiI	CCNNNNNNNGG	3 cut(s)	60, 61, 269
AgsI	TTSAA	5 cut(s)	68, 473, 559, 776, 855
AloI	GAACNNNNNNTCC	2 cut(s)	733, 765
AluBI	AGCT	4 cut(s)	135, 462, 632, 694
AluI	AGCT	4 cut(s)	135, 462, 632, 694
Alw26I	GTCTC	2 cut(s)	161, 168
AoxI	GGCC	2 cut(s)	71, 337
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	2 cut(s)	425, 592
AspLEI	GCGC	1 cut(s)	804
AspS9I	GGNCC	3 cut(s)	51, 257, 338
AsuHPI	GGTGA	2 cut(s)	343, 536
AsuII	TTCGAA	1 cut(s)	101
AsuNHI	GCTAGC	1 cut(s)	838
AvaII	GGWCC	2 cut(s)	51, 257
BaeI	ACNNNNGTAYC	2 cut(s)	336, 369
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	587
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	3 cut(s)	620, 732, 840
BceAI	ACGGC	3 cut(s)	155, 238, 851
BclI	TGATCA	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	161, 168
BfaI	CTAG	2 cut(s)	761, 839
BisI	GCNGC	2 cut(s)	185, 420
BlsI	GCNGC	2 cut(s)	186, 421
Bme18I	GGWCC	2 cut(s)	51, 257
BmgT120I	GGNCC	3 cut(s)	51, 257, 338
BmiI	GGNNCC	1 cut(s)	53
BmsI	GCATC	2 cut(s)	406, 553
BmtI	GCTAGC	1 cut(s)	842
BpiI	GAAGAC	1 cut(s)	587
BplI	GAGNNNNNCTC	2 cut(s)	730, 762
Bpu14I	TTCGAA	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	264, 511, 833
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 61, 269
Bse3DI	GCAATG	1 cut(s)	440
BseDI	CCNNGG	3 cut(s)	264, 511, 833
BseGI	GGATG	2 cut(s)	724, 748
BseLI	CCNNNNNNNGG	3 cut(s)	60, 61, 269
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	1 cut(s)	566
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	2 cut(s)	73, 339
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	3 cut(s)	37, 277, 375
BslI	CCNNNNNNNGG	3 cut(s)	60, 61, 269
BsmAI	GTCTC	2 cut(s)	161, 168
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	3 cut(s)	37, 277, 375
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	73, 339
Bso31I	GGTCTC	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	101
Bsp143I	GATC	3 cut(s)	211, 285, 766
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	2 cut(s)	370, 420
BspANI	GGCC	2 cut(s)	73, 339
BspCNI	CTCAG	1 cut(s)	567
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	1 cut(s)	53
BspOI	GCTAGC	1 cut(s)	842
BspT104I	TTCGAA	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	440
BssECI	CCNNGG	3 cut(s)	264, 511, 833
BssMI	GATC	3 cut(s)	211, 285, 766
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	2 cut(s)	264, 511
Bst2BI	CACGAG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	142
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	696, 840
BstDEI	CTNAG	1 cut(s)	575
BstDSI	CCRYGG	2 cut(s)	511, 833
BstF5I	GGATG	2 cut(s)	724, 748
BstHHI	GCGC	1 cut(s)	804
BstKTI	GATC	3 cut(s)	214, 288, 769
BstMAI	GTCTC	2 cut(s)	161, 168
BstMBI	GATC	3 cut(s)	211, 285, 766
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	587
BsuRI	GGCC	2 cut(s)	73, 339
BtgI	CCRYGG	2 cut(s)	511, 833
BtsCI	GGATG	2 cut(s)	724, 748
Cac8I	GCNNGC	2 cut(s)	696, 840
CciI	TCATGA	1 cut(s)	661
CfoI	GCGC	1 cut(s)	804
Cfr13I	GGNCC	3 cut(s)	51, 257, 338
CseI	GACGC	1 cut(s)	143
CviAII	CATG	7 cut(s)	7, 197, 254, 317, 512, 529, 662
DdeI	CTNAG	1 cut(s)	575
DpnI	GATC	3 cut(s)	213, 287, 768
DpnII	GATC	3 cut(s)	211, 285, 766
DraI	TTTAAA	1 cut(s)	597
Eco130I	CCWWGG	2 cut(s)	264, 511
Eco31I	GGTCTC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	2 cut(s)	51, 257
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	264, 511
EcoT22I	ATGCAT	1 cut(s)	124
ErhI	CCWWGG	2 cut(s)	264, 511
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	7 cut(s)	10, 200, 257, 320, 515, 532, 665
FaqI	GGGAC	3 cut(s)	37, 277, 375
FatI	CATG	7 cut(s)	6, 196, 253, 316, 511, 528, 661
FauI	CCCGC	1 cut(s)	363
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	185, 420
FokI	GGATG	2 cut(s)	711, 735
Fsp4HI	GCNGC	2 cut(s)	185, 420
FspBI	CTAG	2 cut(s)	761, 839
GlaI	GCGC	1 cut(s)	803
GluI	GCNGC	2 cut(s)	185, 420
HaeIII	GGCC	2 cut(s)	73, 339
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	804
Hin1II	CATG	7 cut(s)	10, 200, 257, 320, 515, 532, 665
Hin6I	GCGC	1 cut(s)	802
HinP1I	GCGC	1 cut(s)	802
HinfI	GANTC	2 cut(s)	98, 685
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	2 cut(s)	343, 536
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	5 cut(s)	54, 175, 357, 610, 662
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	679
HpyCH4V	TGCA	3 cut(s)	122, 505, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	1 cut(s)	575
HpySE526I	ACGT	1 cut(s)	679
Hsp92II	CATG	7 cut(s)	10, 200, 257, 320, 515, 532, 665
HspAI	GCGC	1 cut(s)	802
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	211, 285, 766
LmnI	GCTCC	2 cut(s)	28, 629
LpnPI	CCDG	6 cut(s)	34, 173, 595, 636, 680, 804
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	2 cut(s)	406, 553
MaeI	CTAG	2 cut(s)	761, 839
MaeII	ACGT	1 cut(s)	679
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	3 cut(s)	213, 287, 768
MboI	GATC	3 cut(s)	211, 285, 766
MboII	GAAGA	3 cut(s)	93, 592, 788
MluCI	AATT	4 cut(s)	425, 592, 635, 708
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	5 cut(s)	243, 270, 322, 360, 570
Mph1103I	ATGCAT	1 cut(s)	124
MseI	TTAA	3 cut(s)	495, 596, 806
MslI	CAYNNNNRTG	1 cut(s)	753
MspI	CCGG	1 cut(s)	160
Mva1269I	GAATGC	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	222
NcoI	CCATGG	1 cut(s)	511
NdeII	GATC	3 cut(s)	211, 285, 766
NheI	GCTAGC	1 cut(s)	838
NlaIII	CATG	7 cut(s)	10, 200, 257, 320, 515, 532, 665
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	101
PagI	TCATGA	1 cut(s)	661
PctI	GAATGC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	98, 685
PkrI	GCNGC	2 cut(s)	186, 421
PpuMI	RGGWCCY	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	3 cut(s)	51, 257, 338
PspPPI	RGGWCCY	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	753
SaqAI	TTAA	3 cut(s)	495, 596, 806
SatI	GCNGC	2 cut(s)	185, 420
Sau3AI	GATC	3 cut(s)	211, 285, 766
Sau96I	GGNCC	3 cut(s)	51, 257, 338
SfaNI	GCATC	2 cut(s)	406, 553
SfuI	TTCGAA	1 cut(s)	101
SinI	GGWCC	2 cut(s)	51, 257
SmiMI	CAYNNNNRTG	1 cut(s)	753
Sse9I	AATT	4 cut(s)	425, 592, 635, 708
SsiI	CCGC	2 cut(s)	370, 420
SspMI	CTAG	2 cut(s)	761, 839
StyI	CCWWGG	2 cut(s)	264, 511
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	682
TaqI	TCGA	2 cut(s)	101, 174
TasI	AATT	4 cut(s)	425, 592, 635, 708
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	2 cut(s)	98, 685
Tru1I	TTAA	3 cut(s)	495, 596, 806
Tru9I	TTAA	3 cut(s)	495, 596, 806
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	7 cut(s)	185, 242, 471, 650, 678, 694, 731
VpaK11BI	GGWCC	2 cut(s)	51, 257
XapI	RAATTY	2 cut(s)	425, 592
XspI	CTAG	2 cut(s)	761, 839
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.