Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

10696133 .. 10696830

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0068300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTCTTTCTTTCTGTACTCCGCTGAAAGAAAGCGTGTAATAGAGAGAAAGCTGTTTCTGGTCCTGGGACAACGGATATTCGTTTTGCTCAGGGGCTTGGTTGTCTACCTTGATTGTCTTTCTCACAGCCAGAAAGAGAGGAATACCTTGGGTGGAAAGGTTGCCAACATAAGTGCACGAAGAATTGCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

64

Amino Acids

7.34

Weight (kDa)

10.94

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw21I	GWGCWC	1 cut(s)	178
Alw44I	GTGCAC	1 cut(s)	174
ApaLI	GTGCAC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	64, 147
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	64, 147
BseMII	CTCAG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	64, 147
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstSLI	GKGCMC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	3 cut(s)	52, 96, 129
CviKI_1	RGCY	3 cut(s)	52, 96, 129
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaiI	YATR	1 cut(s)	170
FaqI	GGGAC	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	105
Hpy166II	GTNNAC	2 cut(s)	106, 176
Hpy8I	GTNNAC	2 cut(s)	106, 176
HpyCH4V	TGCA	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	89
LpnPI	CCDG	6 cut(s)	44, 50, 76, 77, 143, 174
MboII	GAAGA	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	1 cut(s)	183
MnlI	CCTC	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	61
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	4 cut(s)	54, 111, 149, 162
SinI	GGWCC	1 cut(s)	61
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	147
TasI	AATT	1 cut(s)	183
TatI	WGTACW	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	88
VneI	GTGCAC	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.