pycom07g03680

ribosome biogenesis protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
3126149 .. 3126506
358 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g03680.2

Sequence Viewer

Length: 210 bp
ATGAAAACTACCACTGAATTAAGCAGAGATCATGATATTCCCATTCCTATTAACAGAGGTTCACTTTACAGGCCAATTGAAAGGAAGCCGAAGAAGCCTACAGGCCGGTGGTTCCAAAATCATTGCAAGAAGTTCAGCCATTTGAATCAAAATCGAAGGATACAACCCGTACAAGAAAATATCAAACAGCTGTTGGATGAATCGTCGTGA

Protein Analysis

70

Amino Acids

8.25

Weight (kDa)

10.21

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 171
AgsI TTSAA 2 cut(s) 80, 145
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
AoxI GGCC 2 cut(s) 71, 103
BciVI GTATCC 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 99
BfuI GTATCC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 113
Bse118I RCCGGY 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 121
BseGI GGATG 1 cut(s) 202
BseMI GCAATG 1 cut(s) 121
BshFI GGCC 2 cut(s) 73, 105
BsiSI CCGG 1 cut(s) 106
BsnI GGCC 2 cut(s) 73, 105
Bsp143I GATC 1 cut(s) 28
BspANI GGCC 2 cut(s) 73, 105
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 105
BssMI GATC 1 cut(s) 28
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 99
BsuI GTATCC 1 cut(s) 153
BsuRI GGCC 2 cut(s) 73, 105
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 12
CciI TCATGA 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 105
Csp6I GTAC 1 cut(s) 170
CviAII CATG 1 cut(s) 32
CviJI RGCY 6 cut(s) 73, 88, 97, 105, 138, 190
CviKI_1 RGCY 6 cut(s) 73, 88, 97, 105, 138, 190
CviQI GTAC 1 cut(s) 170
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
FaeI CATG 1 cut(s) 35
FaiI YATR 1 cut(s) 33
FatI CATG 1 cut(s) 31
HaeIII GGCC 2 cut(s) 73, 105
HapII CCGG 1 cut(s) 106
Hin1II CATG 1 cut(s) 35
HinfI GANTC 2 cut(s) 145, 200
HpaII CCGG 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 32, 207
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
Hsp92II CATG 1 cut(s) 35
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 3 cut(s) 55, 87, 119
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 103
MfeI CAATTG 1 cut(s) 75
MluCI AATT 2 cut(s) 17, 75
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 1 cut(s) 50
MseI TTAA 2 cut(s) 20, 51
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 1 cut(s) 106
MunI CAATTG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 113
PagI TCATGA 1 cut(s) 31
PfeI GAWTC 2 cut(s) 145, 200
PspN4I GGNNCC 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SaqAI TTAA 2 cut(s) 20, 51
Sau3AI GATC 1 cut(s) 28
SetI ASST 2 cut(s) 61, 192
SfcI CTRYAG 1 cut(s) 99
SgeI CNNG 7 cut(s) 44, 82, 114, 118, 139, 179, 185
Sse9I AATT 2 cut(s) 17, 75
TaqI TCGA 1 cut(s) 154
TasI AATT 2 cut(s) 17, 75
TfiI GAWTC 2 cut(s) 145, 200
Tru1I TTAA 2 cut(s) 20, 51
Tru9I TTAA 2 cut(s) 20, 51
TscAI CASTG 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.