Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

30069186 .. 30079559

Gene Structure 10374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG137200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3663 bp

ATGGAGCAGTCACACAAGGCACACAGGTCCCGGCAGTCGGGTTCCAAGGCCGATAAGAAGAAGCCCCAAAAAGAGTCGAAGAAGCAAAACCCGAAGGCGTTCGCTTTCAGCTCAACTGTCAAAGCAAAGCGTCTCCAGTCTCGTGCCGTCGAGAAAGAGCAGCGACGACTTCATGTTCCGACCATTGATCGCTCCTACGGCGAACAGCCTCCTTTTGTTGTTCTTGTCCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGGAGGTTAAAGGCCCGATTACCATAGTAACAGGGAAGCAGAGGCGGGTTCAGTTTGTGGAGTGCCCCAATGATATCAATGGCATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTTCTTATAGACGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCAAAGATGCAAAGAAGCTGAGGAAAACAAAGCAGCATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATGTCACTCCCCCTGAAAAAGTGCGCTTGAATAATAAATGTGATAGAAATGTCACACTTTATGGTTATTTGCGGGGGTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTACAGTGTTGCTGGTATGACAGGCTTAGCTGATCCCTGTCCTTTACCCTCTGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCGATGTCTGGACTTGGGGATCTCCTGTATGACAAAGATGCTGTCTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAAGATGAAAAGGAGGAAGCAACAAACAAAGGAGAGCTTGAGGATGTGGGTGTGACCATGGTTAAAAGTCTTCAAAACCCAAAATATTCGCTTGATGAAAAGTTAGAGCAGAGCTTCATTAACTTTTATATCCCGAAACCTAAATTGGAATCTCAACATGATGAAAAAGATCTTGATGAATCCAGAAGACGCATTCGTATGATAGAGCCTTTAGAGGAACATCAGTTTGGGGAAACAATGAAAGCTGGGGGTTCTGGTCAAGAGAGTAATGTTGAGGATATTGATGGCTCAGAATCAAAATCTTATCAGAATGATGCTGCTCGTAATGTTGCACTAACAAAAAGTGATTCAAGTGGATCTGATAGAGAAAATGGTGATGTATCAGATCAAGATGTAAACCTTAAAGATCACTTGAAGGAACATGTTGAGTTTCATGATGGAAGGTCAAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGAGGAGTCAGAAGATGATAACGACGGTGGCGATAATGATGCAGATAATCATACCTCTTCTGGTTCAGAGTCTTCAGAGGAGGATAGAGAAATCCATGAGACAGATGATGATGTGGGAAACATAGCAAAGTGGAAAGAGTCTTTGGCAGAACGGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCAGTTTCAACTAAAGCCAATGAAGAACAAGACAGTAGTGATGAGGAAAGTGACGGAGATGACTTTTTTAAGCCAAAAGGAGACGGAATTAAGAAACATAGAGTAGAAGCAGAAAATTGGAATGTTGAGGACTCTTCCAAATTTACAAATCATTCAATCAAAGACTGGAATGATAAAAAGCTTATAGAGAGTGTGCGTGATCGCTTTGTCACTGGTGATTGGTCAAAGGCTGCTAAAAGAAATCAAGACACAGAGGCCACATTTGAAGATGGGGATGCTGTCTTTGGTGACTTTGAAGATTTAGAAACGGGTGAGAAGCATGATGGATATCATACAAATGAGACTAGAAAAGTTGCAAACAACAAGAAAGCTGGCTTAGATGAAGAGGAGCGGAGGCTCAAAAAGCTTGCTCTTCGTGCCAAGTTTGATGCTCAATATCCTTTTGACACCAAAGAGGGTATTTCTTTTGTGACCTTAATATTATCTACATATGATGAACCTGATACAAGTGAGGAGGAACCTGATGATACACATGTAAGCCAGTTTGGACGAGATCGAGCTAAAGAAAGCGGCTATGTTGACAAGCTGAAGGAGGAGATTGAACTCCGGAAACAAATGAATATAGCTGAACTCAATGACCTTGATGAGGGCACCCGATTAGAGGTTGAGGGTTTCCGGACAGGGACTTACCTTCGGTTGGAAGTTCATGATGTTCCTTATGAGATGTTTGAATATTTTGATCCCTGCCATCCTGTTTTGGTTGGAGGAATTGGTCTTGGGGAAGAAAGCACTGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTGCTAAAGACCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCTGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTACACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCCAATACCGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGCAACATTTAGGATCACCGCCACGGCAGTTGTGCTTGAGTTCAACCACGCATCGCGAATAGTGAAGAAACTCAAACTAGTTGGTTACCCTTGCAAGATATTCAAGAATACAGCACTTATAAAAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCAGTTCGAACAGTCAGTGGCATCCGGGGGCAGGTGAAAAAGGCTGCAAAAGAAGAAATTGGTAACCAACCAAAAAAGAAGGGTGGACAACCAAGAGAAGGAATTGTTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTGTTTTTGCGCGCTTGGACTCAAGTTGAAGTTCCTTGCTTTTACAACCCATTAACCACATCTCTGCAACCCCGTGATCTGACCTGGCGAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGAACGTAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCAATTGAAAGGAAGCAGAGGAAGTTTAACCCATTGGTGATTCCCAAAGCAGTACAAGCAAGTCTTCCATTTAAATCAAAGCCTAAGGATACACCGAATAGAAGAAAGCAACTTCTTGAAGATAGAAGAGCTGTTGTGAGGGAGCCTCATGAACAGAAAATTCATGCTCTGCTTCAAAATCTTCGGTTAATCAAATCTGAGAAGTTAAAGAAGCGCAAGATAAAGGATGAGAAAAAAAGAAAAGAAATTGAAGCACAAAAAGCCAAAGATGAGCAGTTGTCAAGAAAGCGCCAGAGAGAAGAACGACGAGAGAGATACCGGGTGCAAGACAAAGCTCAGAAGAAAATGAGGAGGCATGCAGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1220

Amino Acids

140.37

Weight (kDa)

8.66

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	232 - 305	3.1e-26	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	760 - 1053	1.6e-83	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2933
AarI	CACCTGC	2 cut(s)	857, 3004
Acc36I	ACCTGC	2 cut(s)	857, 3004
AccB1I	GGYRCC	1 cut(s)	2420
AccBSI	CCGCTC	1 cut(s)	2161
AccII	CGCG	2 cut(s)	2869, 3141
AccIII	TCCGGA	2 cut(s)	2376, 2445
AciI	CCGC	7 cut(s)	346, 396, 826, 2161, 2340, 2587, 2832
AclWI	GGATC	5 cut(s)	905, 1005, 1426, 2504, 2834
AcsI	RAATTY	4 cut(s)	401, 1910, 2797, 3453
AcuI	CTGAAG	4 cut(s)	1623, 1755, 2378, 2967
AfaI	GTAC	2 cut(s)	2717, 3348
AflII	CTTAAG	1 cut(s)	2711
AflIII	ACRYGT	2 cut(s)	1483, 2302
AgeI	ACCGGT	1 cut(s)	2777
AhlI	ACTAGT	1 cut(s)	2890
AjnI	CCWGG	2 cut(s)	2576, 3212
AjuI	GAANNNNNNNTTGG	6 cut(s)	1190, 1222, 1272, 1304, 1691, 1723
AloI	GAACNNNNNNTCC	2 cut(s)	709, 741
Alw21I	GWGCWC	1 cut(s)	3098
Alw26I	GTCTC	6 cut(s)	137, 144, 1658, 1723, 1845, 2105
Alw44I	GTGCAC	1 cut(s)	3094
AlwI	GGATC	5 cut(s)	905, 1005, 1426, 2504, 2834
Aor13HI	TCCGGA	2 cut(s)	2376, 2445
AoxI	GGCC	5 cut(s)	48, 313, 2025, 2574, 2755
ApaI	GGGCCC	1 cut(s)	2759
ApaLI	GTGCAC	1 cut(s)	3094
ApeKI	GCWGC	7 cut(s)	160, 565, 932, 949, 1379, 2000, 3026
ApoI	RAATTY	4 cut(s)	401, 1910, 2797, 3453
ArsI	GACNNNNNNTTYG	2 cut(s)	1005, 1037
AsiGI	ACCGGT	1 cut(s)	2777
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	5 cut(s)	780, 3141, 3143, 3510, 3585
AspS9I	GGNCC	5 cut(s)	27, 233, 314, 2755, 2756
AsuC2I	CCSGG	3 cut(s)	31, 3008, 3614
AsuHPI	GGTGA	9 cut(s)	512, 887, 1448, 1997, 2069, 2093, 2821, 3028, 3343
AsuII	TTCGAA	1 cut(s)	2989
AvaII	GGWCC	2 cut(s)	27, 233
AxyI	CCTNAGG	1 cut(s)	3378
BaeGI	GKGCMC	4 cut(s)	368, 2423, 2759, 3098
BaeI	ACNNNNGTAYC	2 cut(s)	2289, 2322
BanI	GGYRCC	1 cut(s)	2420
BanII	GRGCYC	1 cut(s)	2759
BauI	CACGAG	1 cut(s)	141
BbsI	GAAGAC	4 cut(s)	1124, 1255, 1629, 3350
Bbv12I	GWGCWC	1 cut(s)	3098
BbvCI	CCTCAGC	1 cut(s)	551
BbvI	GCAGC	7 cut(s)	172, 577, 919, 936, 1366, 1987, 3013
BccI	CCATC	9 cut(s)	596, 708, 1340, 1493, 2033, 2087, 2526, 2589, 2636
BceAI	ACGGC	3 cut(s)	131, 214, 2853
BcgI	CGANNNNNNTGC	2 cut(s)	1586, 1620
BciT130I	CCWGG	2 cut(s)	2578, 3214
BciVI	GTATCC	2 cut(s)	2558, 3376
BclI	TGATCA	2 cut(s)	261, 1039
BcnI	CCSGG	3 cut(s)	31, 3008, 3614
BcoDI	GTCTC	6 cut(s)	137, 144, 1658, 1723, 1845, 2105
BcuI	ACTAGT	1 cut(s)	2890
BfaI	CTAG	3 cut(s)	737, 2115, 2891
BfmI	CTRYAG	1 cut(s)	3231
BfoI	RGCGCY	1 cut(s)	3586
BfrI	CTTAAG	1 cut(s)	2711
BfuAI	ACCTGC	2 cut(s)	857, 3004
BfuI	GTATCC	2 cut(s)	2558, 3376
BglII	AGATCT	2 cut(s)	1231, 2953
BlpI	GCTNAGC	1 cut(s)	904
Bme1390I	CCNGG	5 cut(s)	31, 2578, 3008, 3214, 3614
Bme18I	GGWCC	2 cut(s)	27, 233
BmgT120I	GGNCC	5 cut(s)	27, 233, 314, 2755, 2756
BmiI	GGNNCC	7 cut(s)	29, 43, 2289, 2422, 2756, 2757, 3438
BmrFI	CCNGG	5 cut(s)	31, 2578, 3008, 3214, 3614
BpiI	GAAGAC	4 cut(s)	1124, 1255, 1629, 3350
BplI	GAGNNNNNCTC	4 cut(s)	706, 738, 3424, 3456
BpmI	CTGGAG	2 cut(s)	119, 2706
Bpu10I	CCTNAGC	1 cut(s)	551
Bpu1102I	GCTNAGC	1 cut(s)	904
Bpu14I	TTCGAA	1 cut(s)	2989
BpuEI	CTTGAG	3 cut(s)	1121, 2870, 3135
BpuMI	CCSGG	3 cut(s)	31, 3008, 3614
BsaBI	GATNNNNATC	1 cut(s)	2097
BsaJI	CCNNGG	7 cut(s)	45, 229, 240, 487, 1119, 2835, 3007
BsaWI	WCCGGW	3 cut(s)	2376, 2445, 2777
BsaXI	ACNNNNNCTCC	2 cut(s)	3238, 3268
Bse118I	RCCGGY	1 cut(s)	2777
Bse1I	ACTGG	6 cut(s)	136, 1940, 1987, 2311, 2566, 2619
Bse21I	CCTNAGG	1 cut(s)	3378
Bse3DI	GCAATG	4 cut(s)	416, 2698, 2734, 2751
Bse8I	GATNNNNATC	1 cut(s)	2097
BseAI	TCCGGA	2 cut(s)	2376, 2445
BseBI	CCWGG	2 cut(s)	2578, 3214
BseDI	CCNNGG	7 cut(s)	45, 229, 240, 487, 1119, 2835, 3007
BseGI	GGATG	8 cut(s)	700, 724, 1111, 2050, 2518, 3003, 3228, 3526
BseJI	GATNNNNATC	1 cut(s)	2097
BseMI	GCAATG	4 cut(s)	416, 2698, 2734, 2751
BseMII	CTCAG	6 cut(s)	542, 1365, 2964, 3228, 3483, 3644
BseNI	ACTGG	6 cut(s)	136, 1940, 1987, 2311, 2566, 2619
BsePI	GCGCGC	1 cut(s)	3139
BseRI	GAGGAG	7 cut(s)	1583, 1658, 2171, 2297, 2378, 3259, 3658
BseSI	GKGCMC	4 cut(s)	368, 2423, 2759, 3098
BseXI	GCAGC	7 cut(s)	172, 577, 919, 936, 1366, 1987, 3013
BseYI	CCCAGC	1 cut(s)	1307
Bsh1236I	CGCG	2 cut(s)	2869, 3141
BshFI	GGCC	5 cut(s)	50, 315, 2027, 2576, 2757
BshNI	GGYRCC	1 cut(s)	2420
BshTI	ACCGGT	1 cut(s)	2777
BsiHKAI	GWGCWC	1 cut(s)	3098
BsiSI	CCGG	6 cut(s)	31, 2377, 2446, 2778, 3007, 3613
BslFI	GGGAC	3 cut(s)	13, 253, 2467
BsmAI	GTCTC	6 cut(s)	137, 144, 1658, 1723, 1845, 2105
BsmBI	CGTCTC	2 cut(s)	137, 1845
BsmFI	GGGAC	3 cut(s)	13, 253, 2467
BsmI	GAATGC	1 cut(s)	1254
BsnI	GGCC	5 cut(s)	50, 315, 2027, 2576, 2757
Bsp119I	TTCGAA	1 cut(s)	2989
Bsp120I	GGGCCC	1 cut(s)	2755
Bsp1286I	GDGCHC	4 cut(s)	368, 2423, 2759, 3098
Bsp13I	TCCGGA	2 cut(s)	2376, 2445
Bsp1720I	GCTNAGC	1 cut(s)	904
Bsp19I	CCATGG	3 cut(s)	229, 487, 1119
Bsp68I	TCGCGA	1 cut(s)	2869
BspACI	CCGC	7 cut(s)	346, 396, 826, 2161, 2340, 2587, 2832
BspANI	GGCC	5 cut(s)	50, 315, 2027, 2576, 2757
BspCNI	CTCAG	6 cut(s)	543, 1364, 2963, 3229, 3484, 3643
BspEI	TCCGGA	2 cut(s)	2376, 2445
BspFNI	CGCG	2 cut(s)	2869, 3141
BspHI	TCATGA	4 cut(s)	637, 1495, 2476, 3442
BspLI	GGNNCC	7 cut(s)	29, 43, 2289, 2422, 2756, 2757, 3438
BspMI	ACCTGC	2 cut(s)	857, 3004
BspPI	GGATC	5 cut(s)	905, 1005, 1426, 2504, 2834
BspQI	GCTCTTC	2 cut(s)	2187, 3415
BspT104I	TTCGAA	1 cut(s)	2989
BspT107I	GGYRCC	1 cut(s)	2420
BspTI	CTTAAG	1 cut(s)	2711
BsrBI	CCGCTC	1 cut(s)	2161
BsrDI	GCAATG	4 cut(s)	416, 2698, 2734, 2751
BsrFI	RCCGGY	1 cut(s)	2777
BsrI	ACTGG	6 cut(s)	136, 1940, 1987, 2311, 2566, 2619
BssAI	RCCGGY	1 cut(s)	2777
BssECI	CCNNGG	7 cut(s)	45, 229, 240, 487, 1119, 2835, 3007
BssHII	GCGCGC	1 cut(s)	3139
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	5 cut(s)	45, 229, 240, 487, 1119
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	2578, 3214
Bst4CI	ACNGT	6 cut(s)	118, 884, 1592, 1805, 2995, 3232
Bst6I	CTCTTC	6 cut(s)	1560, 1627, 1909, 2148, 2187, 3415
BstAFI	CTTAAG	1 cut(s)	2711
BstAPI	GCANNNNNTGC	2 cut(s)	404, 2707
BstBI	TTCGAA	1 cut(s)	2989
BstC8I	GCNNGC	6 cut(s)	2143, 2178, 2574, 2708, 3141, 3651
BstDEI	CTNAG	9 cut(s)	551, 904, 1351, 2146, 2950, 3237, 3378, 3492, 3630
BstDSI	CCRYGG	4 cut(s)	229, 487, 1119, 2835
BstEII	GGTNACC	2 cut(s)	2897, 3044
BstENI	CCTNNNNNAGG	1 cut(s)	2414
BstF5I	GGATG	8 cut(s)	700, 724, 1111, 2050, 2518, 3003, 3228, 3526
BstFNI	CGCG	2 cut(s)	2869, 3141
BstH2I	RGCGCY	1 cut(s)	3586
BstHHI	GCGC	5 cut(s)	780, 3141, 3143, 3510, 3585
BstMAI	GTCTC	6 cut(s)	137, 144, 1658, 1723, 1845, 2105
BstMWI	GCNNNNNNNGC	9 cut(s)	198, 404, 413, 2173, 2186, 2596, 2707, 3350, 3554
BstNI	CCWGG	2 cut(s)	2578, 3214
BstNSI	RCATGY	6 cut(s)	1487, 2306, 2572, 2710, 2734, 3653
BstPI	GGTNACC	2 cut(s)	2897, 3044
BstSCI	CCNGG	5 cut(s)	29, 2576, 3006, 3212, 3612
BstSFI	CTRYAG	1 cut(s)	3231
BstSLI	GKGCMC	4 cut(s)	368, 2423, 2759, 3098
BstUI	CGCG	2 cut(s)	2869, 3141
BstV1I	GCAGC	7 cut(s)	172, 577, 919, 936, 1366, 1987, 3013
BstV2I	GAAGAC	4 cut(s)	1124, 1255, 1629, 3350
BstX2I	RGATCY	4 cut(s)	997, 1231, 1418, 2953
BstYI	RGATCY	4 cut(s)	997, 1231, 1418, 2953
Bsu36I	CCTNAGG	1 cut(s)	3378
BsuI	GTATCC	2 cut(s)	2558, 3376
BsuRI	GGCC	5 cut(s)	50, 315, 2027, 2576, 2757
BtgI	CCRYGG	4 cut(s)	229, 487, 1119, 2835
BtgZI	GCGATG	2 cut(s)	2687, 2850
BtsCI	GGATG	8 cut(s)	700, 724, 1111, 2050, 2518, 3003, 3228, 3526
BtsIMutI	CAGTG	5 cut(s)	889, 1980, 2559, 2626, 3004
BtuMI	TCGCGA	1 cut(s)	2869
BveI	ACCTGC	2 cut(s)	857, 3004
Cac8I	GCNNGC	6 cut(s)	2143, 2178, 2574, 2708, 3141, 3651
CciI	TCATGA	4 cut(s)	637, 1495, 2476, 3442
CfoI	GCGC	5 cut(s)	780, 3141, 3143, 3510, 3585
Cfr10I	RCCGGY	1 cut(s)	2777
Cfr13I	GGNCC	5 cut(s)	27, 233, 314, 2755, 2756
CseI	GACGC	2 cut(s)	119, 1260
Csp6I	GTAC	2 cut(s)	2716, 3347
CspAI	ACCGGT	1 cut(s)	2777
CspCI	CAANNNNNGTGG	2 cut(s)	2824, 2859
CviQI	GTAC	2 cut(s)	2716, 3347
DdeI	CTNAG	9 cut(s)	551, 904, 1351, 2146, 2950, 3237, 3378, 3492, 3630
DraI	TTTAAA	2 cut(s)	573, 3367
Eam1104I	CTCTTC	6 cut(s)	1560, 1627, 1909, 2148, 2187, 3415
EarI	CTCTTC	6 cut(s)	1560, 1627, 1909, 2148, 2187, 3415
Eco130I	CCWWGG	5 cut(s)	45, 229, 240, 487, 1119
Eco24I	GRGCYC	1 cut(s)	2759
Eco32I	GATATC	2 cut(s)	376, 2099
Eco47I	GGWCC	2 cut(s)	27, 233
Eco57I	CTGAAG	4 cut(s)	1623, 1755, 2378, 2967
Eco81I	CCTNAGG	1 cut(s)	3378
Eco91I	GGTNACC	2 cut(s)	2897, 3044
EcoNI	CCTNNNNNAGG	1 cut(s)	2414
EcoO109I	RGGNCCY	3 cut(s)	27, 2755, 2756
EcoO65I	GGTNACC	2 cut(s)	2897, 3044
EcoRII	CCWGG	2 cut(s)	2576, 3212
EcoRV	GATATC	2 cut(s)	376, 2099
EcoT14I	CCWWGG	5 cut(s)	45, 229, 240, 487, 1119
EcoT22I	ATGCAT	1 cut(s)	2736
EcoT38I	GRGCYC	1 cut(s)	2759
ErhI	CCWWGG	5 cut(s)	45, 229, 240, 487, 1119
Esp3I	CGTCTC	2 cut(s)	137, 1845
FalI	AAGNNNNNCTT	4 cut(s)	1083, 1115, 3342, 3374
FaqI	GGGAC	3 cut(s)	13, 253, 2467
FauI	CCCGC	2 cut(s)	339, 819
FauNDI	CATATG	1 cut(s)	2260
FbaI	TGATCA	2 cut(s)	261, 1039
FokI	GGATG	8 cut(s)	687, 711, 1118, 2057, 2505, 2990, 3235, 3533
FriOI	GRGCYC	1 cut(s)	2759
FspBI	CTAG	3 cut(s)	737, 2115, 2891
GlaI	GCGC	5 cut(s)	779, 3140, 3142, 3509, 3584
GsaI	CCCAGC	1 cut(s)	1311
GsuI	CTGGAG	2 cut(s)	119, 2706
HaeII	RGCGCY	1 cut(s)	3586
HaeIII	GGCC	5 cut(s)	50, 315, 2027, 2576, 2757
HapII	CCGG	6 cut(s)	31, 2377, 2446, 2778, 3007, 3613
HgaI	GACGC	2 cut(s)	119, 1260
HhaI	GCGC	5 cut(s)	780, 3141, 3143, 3510, 3585
Hin6I	GCGC	5 cut(s)	778, 3139, 3141, 3508, 3583
HinP1I	GCGC	5 cut(s)	778, 3139, 3141, 3508, 3583
HincII	GTYRAC	2 cut(s)	2350, 3274
HindII	GTYRAC	2 cut(s)	2350, 3274
HindIII	AAGCTT	2 cut(s)	1949, 2174
HpaI	GTTAAC	1 cut(s)	3274
HpaII	CCGG	6 cut(s)	31, 2377, 2446, 2778, 3007, 3613
HphI	GGTGA	9 cut(s)	512, 887, 1448, 1997, 2069, 2093, 2821, 3028, 3343
Hpy166II	GTNNAC	7 cut(s)	1459, 2350, 2718, 2946, 3068, 3096, 3274
Hpy8I	GTNNAC	7 cut(s)	1459, 2350, 2718, 2946, 3068, 3096, 3274
Hpy99I	CGWCG	4 cut(s)	152, 168, 1592, 3603
HpyCH4III	ACNGT	6 cut(s)	118, 884, 1592, 1805, 2995, 3232
HpyCH4IV	ACGT	2 cut(s)	655, 3253
HpyF10VI	GCNNNNNNNGC	9 cut(s)	198, 404, 413, 2173, 2186, 2596, 2707, 3350, 3554
HpyF3I	CTNAG	9 cut(s)	551, 904, 1351, 2146, 2950, 3237, 3378, 3492, 3630
HpySE526I	ACGT	2 cut(s)	655, 3253
HspAI	GCGC	5 cut(s)	778, 3139, 3141, 3508, 3583
Kpn2I	TCCGGA	2 cut(s)	2376, 2445
Ksp22I	TGATCA	2 cut(s)	261, 1039
KspAI	GTTAAC	1 cut(s)	3274
LguI	GCTCTTC	2 cut(s)	2187, 3415
LmnI	GCTCC	5 cut(s)	4, 197, 605, 2158, 3436
Lsp1109I	GCAGC	7 cut(s)	172, 577, 919, 936, 1366, 1987, 3013
MaeI	CTAG	3 cut(s)	737, 2115, 2891
MaeII	ACGT	2 cut(s)	655, 3253
MbiI	CCGCTC	1 cut(s)	2161
MfeI	CAATTG	1 cut(s)	3297
MflI	RGATCY	4 cut(s)	997, 1231, 1418, 2953
MhlI	GDGCHC	4 cut(s)	368, 2423, 2759, 3098
MlyI	GAGTC	6 cut(s)	83, 1580, 1643, 1712, 1895, 3142
MmeI	TCCRAC	3 cut(s)	203, 2448, 2512
Mph1103I	ATGCAT	1 cut(s)	2736
MroI	TCCGGA	2 cut(s)	2376, 2445
MroXI	GAANNNNTTC	1 cut(s)	98
MslI	CAYNNNNRTG	3 cut(s)	729, 1259, 2106
MspCI	CTTAAG	1 cut(s)	2711
MspI	CCGG	6 cut(s)	31, 2377, 2446, 2778, 3007, 3613
MspR9I	CCNGG	5 cut(s)	31, 2578, 3008, 3214, 3614
MunI	CAATTG	1 cut(s)	3297
Mva1269I	GAATGC	1 cut(s)	1254
MvaI	CCWGG	2 cut(s)	2578, 3214
MvnI	CGCG	2 cut(s)	2869, 3141
MwoI	GCNNNNNNNGC	9 cut(s)	198, 404, 413, 2173, 2186, 2596, 2707, 3350, 3554
NciI	CCSGG	3 cut(s)	31, 3008, 3614
NcoI	CCATGG	3 cut(s)	229, 487, 1119
NdeI	CATATG	1 cut(s)	2260
NlaIV	GGNNCC	7 cut(s)	29, 43, 2289, 2422, 2756, 2757, 3438
NruI	TCGCGA	1 cut(s)	2869
NsiI	ATGCAT	1 cut(s)	2736
NspI	RCATGY	6 cut(s)	1487, 2306, 2572, 2710, 2734, 3653
NspV	TTCGAA	1 cut(s)	2989
PaeI	GCATGC	2 cut(s)	2710, 3653
PagI	TCATGA	4 cut(s)	637, 1495, 2476, 3442
PaqCI	CACCTGC	2 cut(s)	857, 3004
PauI	GCGCGC	1 cut(s)	3139
PciI	ACATGT	2 cut(s)	1483, 2302
PciSI	GCTCTTC	2 cut(s)	2187, 3415
PcsI	WCGNNNNNNNCGW	1 cut(s)	1593
PctI	GAATGC	1 cut(s)	1254
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	9 cut(s)	661, 856, 1211, 1241, 1355, 1409, 1559, 3281, 3334
PinAI	ACCGGT	1 cut(s)	2777
PleI	GAGTC	6 cut(s)	82, 1579, 1642, 1711, 1895, 3142
PpsI	GAGTC	6 cut(s)	82, 1579, 1642, 1711, 1895, 3142
PpuMI	RGGWCCY	1 cut(s)	27
PscI	ACATGT	2 cut(s)	1483, 2302
PsiI	TTATAA	1 cut(s)	2933
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	2576, 3212
PspEI	GGTNACC	2 cut(s)	2897, 3044
PspFI	CCCAGC	1 cut(s)	1307
PspGI	CCWGG	2 cut(s)	2576, 3212
PspN4I	GGNNCC	7 cut(s)	29, 43, 2289, 2422, 2756, 2757, 3438
PspOMI	GGGCCC	1 cut(s)	2755
PspPI	GGNCC	5 cut(s)	27, 233, 314, 2755, 2756
PspPPI	RGGWCCY	1 cut(s)	27
PsuI	RGATCY	4 cut(s)	997, 1231, 1418, 2953
PteI	GCGCGC	1 cut(s)	3139
RruI	TCGCGA	1 cut(s)	2869
RsaI	GTAC	2 cut(s)	2717, 3348
RsaNI	GTAC	2 cut(s)	2716, 3347
RseI	CAYNNNNRTG	3 cut(s)	729, 1259, 2106
SapI	GCTCTTC	2 cut(s)	2187, 3415
Sau96I	GGNCC	5 cut(s)	27, 233, 314, 2755, 2756
SchI	GAGTC	6 cut(s)	83, 1580, 1643, 1712, 1895, 3142
ScrFI	CCNGG	5 cut(s)	31, 2578, 3008, 3214, 3614
SduI	GDGCHC	4 cut(s)	368, 2423, 2759, 3098
SfcI	CTRYAG	1 cut(s)	3231
SfuI	TTCGAA	1 cut(s)	2989
SinI	GGWCC	2 cut(s)	27, 233
SmiI	ATTTAAAT	1 cut(s)	3367
SmiMI	CAYNNNNRTG	3 cut(s)	729, 1259, 2106
SmlI	CTYRAG	4 cut(s)	1100, 2711, 2849, 3150
SmoI	CTYRAG	4 cut(s)	1100, 2711, 2849, 3150
SpeI	ACTAGT	1 cut(s)	2890
SphI	GCATGC	2 cut(s)	2710, 3653
SsiI	CCGC	7 cut(s)	346, 396, 826, 2161, 2340, 2587, 2832
SspI	AATATT	4 cut(s)	1148, 2250, 2504, 3259
SspMI	CTAG	3 cut(s)	737, 2115, 2891
StyD4I	CCNGG	5 cut(s)	29, 2576, 3006, 3212, 3612
StyI	CCWWGG	5 cut(s)	45, 229, 240, 487, 1119
SwaI	ATTTAAAT	1 cut(s)	3367
TaaI	ACNGT	6 cut(s)	118, 884, 1592, 1805, 2995, 3232
TaiI	ACGT	2 cut(s)	658, 3256
TaqI	TCGA	6 cut(s)	77, 150, 1727, 2326, 2968, 2989
TatI	WGTACW	2 cut(s)	2715, 3346
TauI	GCSGC	3 cut(s)	398, 2343, 2590
TfiI	GAWTC	9 cut(s)	661, 856, 1211, 1241, 1355, 1409, 1559, 3281, 3334
TscAI	CASTG	5 cut(s)	889, 1987, 2566, 2626, 3004
TseI	GCWGC	7 cut(s)	160, 565, 932, 949, 1379, 2000, 3026
TspGWI	ACGGA	4 cut(s)	447, 1732, 1839, 1869
TspRI	CASTG	5 cut(s)	889, 1987, 2566, 2626, 3004
Vha464I	CTTAAG	1 cut(s)	2711
VneI	GTGCAC	1 cut(s)	3094
VpaK11BI	GGWCC	2 cut(s)	27, 233
XagI	CCTNNNNNAGG	1 cut(s)	2414
XapI	RAATTY	4 cut(s)	401, 1910, 2797, 3453
XceI	RCATGY	6 cut(s)	1487, 2306, 2572, 2710, 2734, 3653
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2779
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	3 cut(s)	737, 2115, 2891
Zsp2I	ATGCAT	1 cut(s)	2736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.