RchiOBHm_Chr5g0051051

ribosome biogenesis protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
51996069 .. 52006665
10597 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32857

Sequence Viewer

Length: 3714 bp
ATGGGCATGATAGATAGTGGAAGTATGGAGCAGTCGCACAAGGCACACAGGTCCCGGCAGTCGGGTTCCAAGGCGGCCGATAAGAAGAAGCCCCAAAAAGATTCGAAGAAGCAAAACCCCAAGGCATTCGCTTTCAGCTCAACTGTCAAAGCCAAGCGTCTCCAGTCTCGTGCCGTCGAGAAAGAGCAGCGACGGCTTCATGTTCCGACCATTGATCGCTCCTACGGCGAACAGCCTCCTTTTGTTGTTCTCGTCCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGGAGGTGAAAGGCCCCATTACCATTGTATCAGGGAAGCAGAGGCGGGTTCAGTTTGTGGAGTGCCCCAATGATATCAATGGTATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTTCTTATAGATGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCAAAGATGCAAAGAAACTGAGGAAAACAAAGCAGCATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATGTCACTCCCCCTGAAAAAGTGCGCTTGAATAATAAATGTGATAGAAATGTCACACTTTATGGTTATTTGCGGGGGTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTACAGTGTCGCTGGTATGACAGGCTTAGCTGATCCCTGTCCTTTACCATCTGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCTATGTCTGGACTTGGGGATCTCCTGTATGACAAAGATGCTGTCTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAGGATGAAAAGGAGGAAGCAACGAACAAAGGAGAGCTTGAGGATGTGGGTGTGACCATGGTTAAAAGTCTTCAAAACCCAAAATATTCGCTTGATGAAAAGTTGGAGCAGAGCTTCATTAACTTTTATATCCAGAAACCTAAATTGGAATCTCAACATGATGAAAAAGATCTTGATGAATCCAGAAAACGCATTCGTATGATAGAGCCTTTAGAGGAATATCAGTTTGGGGAAACAATGAAAGCTGGGGGTTCTGGTCAAGAAAGTAATGTTGAGGATATTGATGGCTCAGAATCAAAATCTTATCAGAATGATGCTGCTCGTAATGTTGCACTAACAAAAAGTGATTCTAGTGGATCTGATAGAGAAAATGGTGATGTATCAGATCAAGATGTTAACCTTAAAGATCACTTGAAGGAACATGTTGAGTTTCATGATGGAAGGTCAAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGAGGATTCAGAAGATGATGACGACGGTGGCGATAATGATGCAGATAATCATACCTCTTCTGGTTCAGAGTCTTCAGAGGAAGATAGAGAAATAGATGAGACAGATGATGATGTGGGAAACATAGCAAAGTGGAAGGAGTCTTTGGCAGAACGGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCATCAGTTTCAACTAAAGCCAGTGAAGAACAAGACAGTAGTGAGGAGGAAAGTGATGGAGATGACTTTTTTAAGCCAAAAGGAGACGGAATTAAGAAACATAGAGTAGAAGCAGAAAATTGGAATGTTGAGGATTCTTCCAAATTTACAAATCATTCAATCAAGGACTGGAATGATAAAAAGCTTATAGAGAGTGTGCGCGATCGCTTTGTCACTGGTGATTGGTCGAAGGCTGCTAAAAGAAATCAAGACACAGAGGCAACATTTGAAGATGAAGATGCTGTCTTTGGTGACTTCGAAGATTTAGAAACGGGTGAGAGGCATGATGGATATCATACAAATGAGACGAGAAAAGTTGCAAACAACAAGAAAGCTGGCTTAGATGAAGAGGAGCGGAGGCTCAAAAAGCTTGCTCTTCGTGCCAAGTTTGATGCTCAATATCCTTTTGACACCAAAGGTTCTTGTCTTGCTTGTTTAGACGGAATTTCTTTTGTGACCTTAATATTATCTACATATGATGAACCTGAAACAAGTGATGAGGAACCTGATGATACACATGTAAGCCAGTTTGGACGAGATCGAGCTAAAGAAAGTGGCTATGTTGACAAGCTGAAGGAGGAGATTGAACTCCGAAAACAAATGAATATAGCCGAACTCAATGACCTTGATGAGGACATCCGATTAGAGGTTGAGGGTTTCCGGACAGGGACTTACCTTCGGTTGGAAGTTCATGATATTCCTTGTGAGATGGTTGAATATTTTGATCCCTGCCAGCCTGTTTTGGTTGGAGGAATTGGTCTTGGGGAAGAAAGCACTGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTGCTAAAGACCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCTGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTATACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCCAATACTGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGCAACATTTAGGATCACCGCCACGGCAGTTGTGCTTGAGTTCAACCATGCATCGCGAATAGTGAAGAAACTCAAACTAGTTGGTTACCCTTGCAAGATATTCAAGAATACAGCACTTATAAAAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCTGTTCGAACAGTCAGTGGCATCCGGGGGCAGGTGAAAAAGGCTGCAAAAGAAGAAATTGGTAACCAACCGAAAAAGAAGGGTGGACAACCAAAAGAAGGAATTGTTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTGTTTTTGCGCGCTTGGACTCAAGTTGATGTTCCTTGCTTTTACAACCCATTAACCACATCTCTGCAACCCCGAGCTCTGACCTGGCGAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGAACGCAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCAATTGAAAGGAAGCAGAGGAAGTTCAACCCACTGGTGATTCCCAAAGCAGTACAAGCAAGTCTTCCATTTAAATCAAAGCCTAAGGATACACCGAATAGAAGAAAGCAACTTCTTGAGGATAGAAGAGCTGTTGTGAGGGAGCCTCATGAACAGAAAATTCATGCTCTGCTTCAAAATCTTCGGTTAATCAAATCTGAGAAGTTAAAGAAGCGCAAGATAAAGGATGAGAAAAAAAGAAAAGAAATTGAAGCACAGAAAGCCAAAGATGAGCAGTTGACAAGAAAGCGCCAGAGAGAAGAACGACGAGAGAGATACCGGGTGCAAGACAAAGCTCAGAAGAAAATGAGGAGACACGCGGAGGACTGA

Protein Analysis

1237

Amino Acids

141.89

Weight (kDa)

8.37

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AARP2CN PF08142 241 - 314 3.2e-26 AARP2CN (NUC121) domain
RIBIOP_C PF04950 786 - 1070 7.9e-84 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2984
AarI CACCTGC 2 cut(s) 884, 3055
Acc36I ACCTGC 2 cut(s) 884, 3055
AccBSI CCGCTC 1 cut(s) 2191
AccI GTMKAC 1 cut(s) 2768
AccII CGCG 4 cut(s) 1998, 2920, 3192, 3704
AccIII TCCGGA 1 cut(s) 2496
AciI CCGC 8 cut(s) 74, 373, 423, 853, 2191, 2638, 2883, 3704
AclWI GGATC 5 cut(s) 932, 1032, 1453, 2555, 2885
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 5 cut(s) 428, 1940, 2280, 2848, 3504
AcuI CTGAAG 2 cut(s) 1650, 2429
AfaI GTAC 1 cut(s) 3399
AflII CTTAAG 1 cut(s) 2762
AflIII ACRYGT 2 cut(s) 1510, 2353
AhlI ACTAGT 1 cut(s) 2941
AjnI CCWGG 3 cut(s) 1089, 2627, 3263
AjuI GAANNNNNNNTTGG 6 cut(s) 1217, 1249, 1299, 1331, 1718, 1750
AloI GAACNNNNNNTCC 2 cut(s) 736, 768
Alw21I GWGCWC 2 cut(s) 3149, 3259
Alw26I GTCTC 7 cut(s) 164, 171, 1685, 1750, 1875, 2135, 3691
Alw44I GTGCAC 1 cut(s) 3145
AlwI GGATC 5 cut(s) 932, 1032, 1453, 2555, 2885
Ama87I CYCGRG 1 cut(s) 3252
Aor13HI TCCGGA 1 cut(s) 2496
AoxI GGCC 4 cut(s) 75, 340, 2625, 2806
ApaI GGGCCC 1 cut(s) 2810
ApaLI GTGCAC 1 cut(s) 3145
ApeKI GCWGC 7 cut(s) 187, 592, 959, 976, 1406, 2030, 3077
ApoI RAATTY 5 cut(s) 428, 1940, 2280, 2848, 3504
ArsI GACNNNNNNTTYG 2 cut(s) 1032, 1064
AsiSI GCGATCGC 1 cut(s) 2002
AspLEI GCGC 6 cut(s) 807, 1998, 3192, 3194, 3561, 3636
AspS9I GGNCC 5 cut(s) 51, 260, 341, 2806, 2807
AsuC2I CCSGG 3 cut(s) 55, 3059, 3665
AsuII TTCGAA 3 cut(s) 104, 2094, 3040
AvaI CYCGRG 1 cut(s) 3252
AvaII GGWCC 2 cut(s) 51, 260
AxyI CCTNAGG 1 cut(s) 3429
BaeGI GKGCMC 3 cut(s) 395, 2810, 3149
BaeI ACNNNNGTAYC 4 cut(s) 339, 372, 2340, 2373
BanII GRGCYC 2 cut(s) 2810, 3259
BauI CACGAG 1 cut(s) 168
BbsI GAAGAC 3 cut(s) 1151, 1656, 3401
Bbv12I GWGCWC 2 cut(s) 3149, 3259
BbvI GCAGC 7 cut(s) 199, 604, 946, 963, 1393, 2017, 3064
BceAI ACGGC 4 cut(s) 158, 209, 241, 2904
BcgI CGANNNNNNTGC 2 cut(s) 1613, 1647
BciT130I CCWGG 3 cut(s) 1091, 2629, 3265
BciVI GTATCC 2 cut(s) 2609, 3427
BclI TGATCA 2 cut(s) 288, 1066
BcnI CCSGG 3 cut(s) 55, 3059, 3665
BcoDI GTCTC 7 cut(s) 164, 171, 1685, 1750, 1875, 2135, 3691
BcuI ACTAGT 1 cut(s) 2941
BfaI CTAG 3 cut(s) 764, 1440, 2942
BfmI CTRYAG 1 cut(s) 3282
BfoI RGCGCY 1 cut(s) 3637
BfrI CTTAAG 1 cut(s) 2762
BfuAI ACCTGC 2 cut(s) 884, 3055
BfuI GTATCC 2 cut(s) 2609, 3427
BglII AGATCT 2 cut(s) 1258, 3004
BlpI GCTNAGC 1 cut(s) 931
Bme1390I CCNGG 6 cut(s) 55, 1091, 2629, 3059, 3265, 3665
Bme18I GGWCC 2 cut(s) 51, 260
BmeT110I CYCGRG 1 cut(s) 3252
BmgT120I GGNCC 5 cut(s) 51, 260, 341, 2806, 2807
BmiI GGNNCC 7 cut(s) 53, 67, 343, 2340, 2807, 2808, 3489
BmrFI CCNGG 6 cut(s) 55, 1091, 2629, 3059, 3265, 3665
BpiI GAAGAC 3 cut(s) 1151, 1656, 3401
BplI GAGNNNNNCTC 4 cut(s) 733, 765, 3475, 3507
BpmI CTGGAG 2 cut(s) 146, 2757
Bpu1102I GCTNAGC 1 cut(s) 931
Bpu14I TTCGAA 3 cut(s) 104, 2094, 3040
BpuEI CTTGAG 4 cut(s) 1148, 2921, 3186, 3482
BpuMI CCSGG 3 cut(s) 55, 3059, 3665
BsaBI GATNNNNATC 1 cut(s) 2127
BsaJI CCNNGG 8 cut(s) 69, 120, 256, 267, 514, 1146, 2886, 3058
BsaWI WCCGGW 1 cut(s) 2496
Bse1I ACTGG 9 cut(s) 163, 1818, 1970, 2017, 2362, 2617, 2670, 2833, 3384
Bse21I CCTNAGG 1 cut(s) 3429
Bse3DI GCAATG 4 cut(s) 443, 2749, 2785, 2802
Bse8I GATNNNNATC 1 cut(s) 2127
BseAI TCCGGA 1 cut(s) 2496
BseBI CCWGG 3 cut(s) 1091, 2629, 3265
BseDI CCNNGG 8 cut(s) 69, 120, 256, 267, 514, 1146, 2886, 3058
BseGI GGATG 8 cut(s) 727, 751, 1099, 1138, 2472, 3054, 3279, 3577
BseJI GATNNNNATC 1 cut(s) 2127
BseMI GCAATG 4 cut(s) 443, 2749, 2785, 2802
BseMII CTCAG 6 cut(s) 569, 1392, 3015, 3279, 3534, 3695
BseNI ACTGG 9 cut(s) 163, 1818, 1970, 2017, 2362, 2617, 2670, 2833, 3384
BsePI GCGCGC 1 cut(s) 3190
BseRI GAGGAG 5 cut(s) 1856, 2201, 2429, 3310, 3709
BseSI GKGCMC 3 cut(s) 395, 2810, 3149
BseX3I CGGCCG 1 cut(s) 75
BseXI GCAGC 7 cut(s) 199, 604, 946, 963, 1393, 2017, 3064
BseYI CCCAGC 1 cut(s) 1334
Bsh1236I CGCG 4 cut(s) 1998, 2920, 3192, 3704
Bsh1285I CGRYCG 2 cut(s) 78, 2002
BshFI GGCC 4 cut(s) 77, 342, 2627, 2808
BsiEI CGRYCG 2 cut(s) 78, 2002
BsiHKAI GWGCWC 2 cut(s) 3149, 3259
BsiHKCI CYCGRG 1 cut(s) 3252
BsiSI CCGG 4 cut(s) 55, 2497, 3058, 3664
BslFI GGGAC 3 cut(s) 37, 280, 2518
BsmAI GTCTC 7 cut(s) 164, 171, 1685, 1750, 1875, 2135, 3691
BsmBI CGTCTC 3 cut(s) 164, 1875, 2135
BsmFI GGGAC 3 cut(s) 37, 280, 2518
BsmI GAATGC 2 cut(s) 125, 1281
BsnI GGCC 4 cut(s) 77, 342, 2627, 2808
BsoBI CYCGRG 1 cut(s) 3252
Bsp119I TTCGAA 3 cut(s) 104, 2094, 3040
Bsp120I GGGCCC 1 cut(s) 2806
Bsp1286I GDGCHC 4 cut(s) 395, 2810, 3149, 3259
Bsp13I TCCGGA 1 cut(s) 2496
Bsp1720I GCTNAGC 1 cut(s) 931
Bsp19I CCATGG 3 cut(s) 256, 514, 1146
Bsp68I TCGCGA 1 cut(s) 2920
BspACI CCGC 8 cut(s) 74, 373, 423, 853, 2191, 2638, 2883, 3704
BspANI GGCC 4 cut(s) 77, 342, 2627, 2808
BspCNI CTCAG 6 cut(s) 570, 1391, 3014, 3280, 3535, 3694
BspEI TCCGGA 1 cut(s) 2496
BspFNI CGCG 4 cut(s) 1998, 2920, 3192, 3704
BspHI TCATGA 4 cut(s) 664, 1522, 2527, 3493
BspLI GGNNCC 7 cut(s) 53, 67, 343, 2340, 2807, 2808, 3489
BspMI ACCTGC 2 cut(s) 884, 3055
BspPI GGATC 5 cut(s) 932, 1032, 1453, 2555, 2885
BspQI GCTCTTC 2 cut(s) 2217, 3466
BspT104I TTCGAA 3 cut(s) 104, 2094, 3040
BspTI CTTAAG 1 cut(s) 2762
BsrBI CCGCTC 1 cut(s) 2191
BsrDI GCAATG 4 cut(s) 443, 2749, 2785, 2802
BsrI ACTGG 9 cut(s) 163, 1818, 1970, 2017, 2362, 2617, 2670, 2833, 3384
BssECI CCNNGG 8 cut(s) 69, 120, 256, 267, 514, 1146, 2886, 3058
BssHII GCGCGC 1 cut(s) 3190
BssNAI GTATAC 1 cut(s) 2769
BssSI CACGAG 1 cut(s) 168
BssT1I CCWWGG 6 cut(s) 69, 120, 256, 267, 514, 1146
Bst1107I GTATAC 1 cut(s) 2769
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 3 cut(s) 1091, 2629, 3265
Bst4CI ACNGT 6 cut(s) 145, 911, 1619, 1835, 3046, 3283
Bst6I CTCTTC 5 cut(s) 1587, 1654, 2178, 2217, 3466
BstAFI CTTAAG 1 cut(s) 2762
BstAPI GCANNNNNTGC 2 cut(s) 431, 2758
BstBI TTCGAA 3 cut(s) 104, 2094, 3040
BstC8I GCNNGC 6 cut(s) 2173, 2208, 2570, 2625, 2759, 3192
BstDEI CTNAG 9 cut(s) 578, 931, 1378, 2176, 3001, 3288, 3429, 3543, 3681
BstDSI CCRYGG 4 cut(s) 256, 514, 1146, 2886
BstEII GGTNACC 2 cut(s) 2948, 3095
BstENI CCTNNNNNAGG 1 cut(s) 2465
BstF5I GGATG 8 cut(s) 727, 751, 1099, 1138, 2472, 3054, 3279, 3577
BstFNI CGCG 4 cut(s) 1998, 2920, 3192, 3704
BstH2I RGCGCY 1 cut(s) 3637
BstHHI GCGC 6 cut(s) 807, 1998, 3192, 3194, 3561, 3636
BstMAI GTCTC 7 cut(s) 164, 171, 1685, 1750, 1875, 2135, 3691
BstMCI CGRYCG 2 cut(s) 78, 2002
BstNI CCWGG 3 cut(s) 1091, 2629, 3265
BstNSI RCATGY 5 cut(s) 1514, 2357, 2623, 2761, 2785
BstPI GGTNACC 2 cut(s) 2948, 3095
BstSCI CCNGG 6 cut(s) 53, 1089, 2627, 3057, 3263, 3663
BstSFI CTRYAG 1 cut(s) 3282
BstSLI GKGCMC 3 cut(s) 395, 2810, 3149
BstUI CGCG 4 cut(s) 1998, 2920, 3192, 3704
BstV1I GCAGC 7 cut(s) 199, 604, 946, 963, 1393, 2017, 3064
BstV2I GAAGAC 3 cut(s) 1151, 1656, 3401
BstX2I RGATCY 4 cut(s) 1024, 1258, 1445, 3004
BstYI RGATCY 4 cut(s) 1024, 1258, 1445, 3004
BstZ17I GTATAC 1 cut(s) 2769
BstZI CGGCCG 1 cut(s) 75
Bsu36I CCTNAGG 1 cut(s) 3429
BsuI GTATCC 2 cut(s) 2609, 3427
BsuRI GGCC 4 cut(s) 77, 342, 2627, 2808
BtgI CCRYGG 4 cut(s) 256, 514, 1146, 2886
BtgZI GCGATG 2 cut(s) 2738, 2901
BtsCI GGATG 8 cut(s) 727, 751, 1099, 1138, 2472, 3054, 3279, 3577
BtsIMutI CAGTG 7 cut(s) 916, 1825, 2010, 2610, 2677, 3055, 3377
BtuMI TCGCGA 1 cut(s) 2920
BveI ACCTGC 2 cut(s) 884, 3055
Cac8I GCNNGC 6 cut(s) 2173, 2208, 2570, 2625, 2759, 3192
CciI TCATGA 4 cut(s) 664, 1522, 2527, 3493
CfoI GCGC 6 cut(s) 807, 1998, 3192, 3194, 3561, 3636
Cfr13I GGNCC 5 cut(s) 51, 260, 341, 2806, 2807
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 3398
CspCI CAANNNNNGTGG 2 cut(s) 2875, 2910
CviQI GTAC 1 cut(s) 3398
DdeI CTNAG 9 cut(s) 578, 931, 1378, 2176, 3001, 3288, 3429, 3543, 3681
DraI TTTAAA 2 cut(s) 600, 3418
EaeI YGGCCR 1 cut(s) 75
EagI CGGCCG 1 cut(s) 75
Eam1104I CTCTTC 5 cut(s) 1587, 1654, 2178, 2217, 3466
EarI CTCTTC 5 cut(s) 1587, 1654, 2178, 2217, 3466
Ecl136II GAGCTC 1 cut(s) 3257
EclXI CGGCCG 1 cut(s) 75
Eco130I CCWWGG 6 cut(s) 69, 120, 256, 267, 514, 1146
Eco24I GRGCYC 2 cut(s) 2810, 3259
Eco32I GATATC 2 cut(s) 403, 2129
Eco47I GGWCC 2 cut(s) 51, 260
Eco52I CGGCCG 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 3257
Eco57I CTGAAG 2 cut(s) 1650, 2429
Eco81I CCTNAGG 1 cut(s) 3429
Eco88I CYCGRG 1 cut(s) 3252
Eco91I GGTNACC 2 cut(s) 2948, 3095
EcoICRI GAGCTC 1 cut(s) 3257
EcoNI CCTNNNNNAGG 1 cut(s) 2465
EcoO109I RGGNCCY 4 cut(s) 51, 341, 2806, 2807
EcoO65I GGTNACC 2 cut(s) 2948, 3095
EcoRII CCWGG 3 cut(s) 1089, 2627, 3263
EcoRV GATATC 2 cut(s) 403, 2129
EcoT14I CCWWGG 6 cut(s) 69, 120, 256, 267, 514, 1146
EcoT22I ATGCAT 2 cut(s) 2787, 2917
EcoT38I GRGCYC 2 cut(s) 2810, 3259
ErhI CCWWGG 6 cut(s) 69, 120, 256, 267, 514, 1146
Esp3I CGTCTC 3 cut(s) 164, 1875, 2135
FalI AAGNNNNNCTT 4 cut(s) 1110, 1142, 3393, 3425
FaqI GGGAC 3 cut(s) 37, 280, 2518
FauI CCCGC 2 cut(s) 366, 846
FauNDI CATATG 1 cut(s) 2311
FbaI TGATCA 2 cut(s) 288, 1066
FblI GTMKAC 1 cut(s) 2768
FokI GGATG 8 cut(s) 714, 738, 1106, 1145, 2459, 3041, 3286, 3584
FriOI GRGCYC 2 cut(s) 2810, 3259
FspBI CTAG 3 cut(s) 764, 1440, 2942
GlaI GCGC 6 cut(s) 806, 1997, 3191, 3193, 3560, 3635
GsaI CCCAGC 1 cut(s) 1338
GsuI CTGGAG 2 cut(s) 146, 2757
HaeII RGCGCY 1 cut(s) 3637
HaeIII GGCC 4 cut(s) 77, 342, 2627, 2808
HapII CCGG 4 cut(s) 55, 2497, 3058, 3664
HgaI GACGC 1 cut(s) 146
HhaI GCGC 6 cut(s) 807, 1998, 3192, 3194, 3561, 3636
Hin6I GCGC 6 cut(s) 805, 1996, 3190, 3192, 3559, 3634
HinP1I GCGC 6 cut(s) 805, 1996, 3190, 3192, 3559, 3634
HincII GTYRAC 4 cut(s) 1486, 2401, 3325, 3624
HindII GTYRAC 4 cut(s) 1486, 2401, 3325, 3624
HindIII AAGCTT 2 cut(s) 1979, 2204
HpaI GTTAAC 2 cut(s) 1486, 3325
HpaII CCGG 4 cut(s) 55, 2497, 3058, 3664
Hpy166II GTNNAC 8 cut(s) 1486, 2401, 2769, 2997, 3119, 3147, 3325, 3624
Hpy8I GTNNAC 8 cut(s) 1486, 2401, 2769, 2997, 3119, 3147, 3325, 3624
Hpy99I CGWCG 4 cut(s) 179, 195, 1619, 3654
HpyCH4III ACNGT 6 cut(s) 145, 911, 1619, 1835, 3046, 3283
HpyCH4IV ACGT 1 cut(s) 682
HpyF3I CTNAG 9 cut(s) 578, 931, 1378, 2176, 3001, 3288, 3429, 3543, 3681
HpySE526I ACGT 1 cut(s) 682
HspAI GCGC 6 cut(s) 805, 1996, 3190, 3192, 3559, 3634
Kpn2I TCCGGA 1 cut(s) 2496
Ksp22I TGATCA 2 cut(s) 288, 1066
KspAI GTTAAC 2 cut(s) 1486, 3325
LguI GCTCTTC 2 cut(s) 2217, 3466
LmnI GCTCC 6 cut(s) 28, 224, 632, 1195, 2188, 3487
Lsp1109I GCAGC 7 cut(s) 199, 604, 946, 963, 1393, 2017, 3064
MaeI CTAG 3 cut(s) 764, 1440, 2942
MaeII ACGT 1 cut(s) 682
MbiI CCGCTC 1 cut(s) 2191
MfeI CAATTG 1 cut(s) 3348
MflI RGATCY 4 cut(s) 1024, 1258, 1445, 3004
MhlI GDGCHC 4 cut(s) 395, 2810, 3149, 3259
MlyI GAGTC 3 cut(s) 1670, 1739, 3193
MmeI TCCRAC 4 cut(s) 230, 1173, 2499, 2563
Mph1103I ATGCAT 2 cut(s) 2787, 2917
MroI TCCGGA 1 cut(s) 2496
MslI CAYNNNNRTG 3 cut(s) 756, 1286, 2136
MspCI CTTAAG 1 cut(s) 2762
MspI CCGG 4 cut(s) 55, 2497, 3058, 3664
MspR9I CCNGG 6 cut(s) 55, 1091, 2629, 3059, 3265, 3665
MunI CAATTG 1 cut(s) 3348
Mva1269I GAATGC 2 cut(s) 125, 1281
MvaI CCWGG 3 cut(s) 1091, 2629, 3265
MvnI CGCG 4 cut(s) 1998, 2920, 3192, 3704
NciI CCSGG 3 cut(s) 55, 3059, 3665
NcoI CCATGG 3 cut(s) 256, 514, 1146
NdeI CATATG 1 cut(s) 2311
NlaIV GGNNCC 7 cut(s) 53, 67, 343, 2340, 2807, 2808, 3489
NmuCI GTSAC 8 cut(s) 784, 832, 1141, 2008, 2087, 2290, 2672, 3173
NruI TCGCGA 1 cut(s) 2920
NsiI ATGCAT 2 cut(s) 2787, 2917
NspI RCATGY 5 cut(s) 1514, 2357, 2623, 2761, 2785
NspV TTCGAA 3 cut(s) 104, 2094, 3040
PaeI GCATGC 1 cut(s) 2761
PagI TCATGA 4 cut(s) 664, 1522, 2527, 3493
PaqCI CACCTGC 2 cut(s) 884, 3055
PauI GCGCGC 1 cut(s) 3190
PciI ACATGT 2 cut(s) 1510, 2353
PciSI GCTCTTC 2 cut(s) 2217, 3466
PcsI WCGNNNNNNNCGW 1 cut(s) 1620
PctI GAATGC 2 cut(s) 125, 1281
Ple19I CGATCG 1 cut(s) 2002
PleI GAGTC 3 cut(s) 1669, 1738, 3193
PpsI GAGTC 3 cut(s) 1669, 1738, 3193
PpuMI RGGWCCY 1 cut(s) 51
PscI ACATGT 2 cut(s) 1510, 2353
PsiI TTATAA 1 cut(s) 2984
Psp124BI GAGCTC 1 cut(s) 3259
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 1089, 2627, 3263
PspEI GGTNACC 2 cut(s) 2948, 3095
PspFI CCCAGC 1 cut(s) 1334
PspGI CCWGG 3 cut(s) 1089, 2627, 3263
PspN4I GGNNCC 7 cut(s) 53, 67, 343, 2340, 2807, 2808, 3489
PspOMI GGGCCC 1 cut(s) 2806
PspPI GGNCC 5 cut(s) 51, 260, 341, 2806, 2807
PspPPI RGGWCCY 1 cut(s) 51
PsuI RGATCY 4 cut(s) 1024, 1258, 1445, 3004
PteI GCGCGC 1 cut(s) 3190
PvuI CGATCG 1 cut(s) 2002
RgaI GCGATCGC 1 cut(s) 2002
RruI TCGCGA 1 cut(s) 2920
RsaI GTAC 1 cut(s) 3399
RsaNI GTAC 1 cut(s) 3398
RseI CAYNNNNRTG 3 cut(s) 756, 1286, 2136
SacI GAGCTC 1 cut(s) 3259
SapI GCTCTTC 2 cut(s) 2217, 3466
Sau96I GGNCC 5 cut(s) 51, 260, 341, 2806, 2807
SchI GAGTC 3 cut(s) 1670, 1739, 3193
ScrFI CCNGG 6 cut(s) 55, 1091, 2629, 3059, 3265, 3665
SduI GDGCHC 4 cut(s) 395, 2810, 3149, 3259
SfaAI GCGATCGC 1 cut(s) 2002
SfcI CTRYAG 1 cut(s) 3282
SfuI TTCGAA 3 cut(s) 104, 2094, 3040
SgfI GCGATCGC 1 cut(s) 2002
SinI GGWCC 2 cut(s) 51, 260
SmiI ATTTAAAT 1 cut(s) 3418
SmiMI CAYNNNNRTG 3 cut(s) 756, 1286, 2136
SmlI CTYRAG 5 cut(s) 1127, 2762, 2900, 3201, 3461
SmoI CTYRAG 5 cut(s) 1127, 2762, 2900, 3201, 3461
SpeI ACTAGT 1 cut(s) 2941
SphI GCATGC 1 cut(s) 2761
SsiI CCGC 8 cut(s) 74, 373, 423, 853, 2191, 2638, 2883, 3704
SspI AATATT 4 cut(s) 1175, 2301, 2555, 3310
SspMI CTAG 3 cut(s) 764, 1440, 2942
SstI GAGCTC 1 cut(s) 3259
StyD4I CCNGG 6 cut(s) 53, 1089, 2627, 3057, 3263, 3663
StyI CCWWGG 6 cut(s) 69, 120, 256, 267, 514, 1146
SwaI ATTTAAAT 1 cut(s) 3418
TaaI ACNGT 6 cut(s) 145, 911, 1619, 1835, 3046, 3283
TaiI ACGT 1 cut(s) 685
TaqI TCGA 8 cut(s) 104, 177, 1754, 2024, 2094, 2377, 3019, 3040
TatI WGTACW 1 cut(s) 3397
TauI GCSGC 3 cut(s) 77, 425, 2641
TscAI CASTG 7 cut(s) 916, 1825, 2017, 2617, 2677, 3055, 3384
TseFI GTSAC 8 cut(s) 784, 832, 1141, 2008, 2087, 2290, 2672, 3173
TseI GCWGC 7 cut(s) 187, 592, 959, 976, 1406, 2030, 3077
Tsp45I GTSAC 8 cut(s) 784, 832, 1141, 2008, 2087, 2290, 2672, 3173
TspGWI ACGGA 3 cut(s) 1759, 1899, 2292
TspRI CASTG 7 cut(s) 916, 1825, 2017, 2617, 2677, 3055, 3384
Vha464I CTTAAG 1 cut(s) 2762
VneI GTGCAC 1 cut(s) 3145
VpaK11BI GGWCC 2 cut(s) 51, 260
XagI CCTNNNNNAGG 1 cut(s) 2465
XapI RAATTY 5 cut(s) 428, 1940, 2280, 2848, 3504
XceI RCATGY 5 cut(s) 1514, 2357, 2623, 2761, 2785
XcmI CCANNNNNNNNNTGG 1 cut(s) 2830
XmiI GTMKAC 1 cut(s) 2768
XspI CTAG 3 cut(s) 764, 1440, 2942
Zsp2I ATGCAT 2 cut(s) 2787, 2917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.