Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

66394782 .. 66401128

Gene Structure 6347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2529 bp

ATGGATAGTGGGACTAAGGAGCAGTCGCATAAGGGTCATAGGGCCAGGCAGTCGGGTCCTAAGGCTAATAAGAAGCCTGAAACCTCAAGAATCGACCGGTGGCAAAACCACAGGGCATTTGCTTTTAACTCCACCGTCAAAGCCAAGCGTCTGCAATACCGTGCCATTGAGAAAGAGCAGAACAGGCCTATGGCGAAGAACCAGCTCCATACGTTGTTGTGGTGCATGGACCTCCAAAGGAAACATTTGAATTCCTTAATATATTGCAAGTTCATGGCTTCCCAAAGGTTATGGGAGTTCTTACTCACCTTGATAAAGTTTGTCAAAAGAGAAATTCACAATCTGGCACGTTTCATATCTGTTATGAAGTTTCATCCTTTATCTTGGCAAACTGCTCATCCTTATGTTTTGGTAGATCGTTTTGAAGATGTCACTCCTCCTGAAAATGTCCATATGAATAACAAATGTGATAGAAATGTCACACTCTATGGTTATCTGCGGGGTTGTAGCATGAAGAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTATAATGTTTCTGCTATGACAGCCATGACTGATCCTTGTCCTTTACCCTCAGCTGCCAGAAAGAAGGGACTGAGAAAGTGCGAAGATTTGGGTGTGAATTTGGTAAAATCCCTTCAGAGCACAAAATATTCGGTTGATGAAAAGCTAGAGCAGGGTTCCATTAATCTTTTTAACTGGAAGCCTAACTTATCGTTGGAAACTCAACGTGATGGGAAGGATACTAGTGAATCTAGAGAACAGATTTGCATGATAGAGAACTCAGAGGATTATCAGTCTGGAGAAGCTACCAAAGCTGATGCTGCTGATATATACGACTCAAATGATGAGGCTGAAGTTGAGGGTGGGGATGAAGATGACGACAACGACAACGATTATGTAGATAATTGTGCATATAGTGGTTCAGAGTCTTCAGGTGAAGATGAGCAGAAACAGAGAGAGGTAGAAGGTGGAAATTGGAAAGTCGACGACTGTTCCAAGTATTATTCAAATTTCAATGACTGGAAAAGGAAAGAATGTGAAGAGAGTATTTGCAATTGTTTTGTCACTGGTGATTGGTTGAAAGCTGCTCAAAGAAATGAAACCACTGAGGATAATGAAGATGAAGATGTTGTCTATGGTGACTTTGAAGATTTAGAAACTGGTGAGAAGCATACTAGGAATACAAGCAAGGAAAATGACTTGGCCAAAGAGGAGCAGAGGCTAAAAAAGCTTGTTCTTCGTGTAAAGTTTAATGGTCAGTATCCTGCACCTGAAAGATCTATTTCTGAGTCATATGCGAAGGAATTTGTTAATAAATATGGAGGCAATTGTGGCCGAGTTCAATCCAAAGAAAGTGATTATTTTGATGAGCTGAAGGAGGAGATTGAACTGCAGAAAGAGATGAACAAAGCTGAACTCAATGACATTGACGAGGATACCCGAATAGAGATAGATGGTTTTCGAACAGTGACTTACCTACGGTTGGAGGTTCATGATGTTCCTATGAGATGGTTAAAACAGCATAGATGGCACAAGAAAGTTCTGAAGACTAGTGATCCTATCGTTGTTTCTATTGGGTGGAGACGATACCAAACAATACCAGTTTATGCCATTGAAGATCGCAATGGAAGGCATTGCAGGCTTAAGTACACTCCAGAACATATGCACTGTCTTGCCATGTTTTTGGGCCCTCCCCCTCCCAATACTGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGCAGCATTTAGGATCGCAGCAACTGCTGTTGTGCTCGAGTTCAACCACACATCAAAGATAGAGAAGAAAGTCAAAATGGTTGGTTATCCCCGCCAGATATTCAAGAAGACAGCACTAATAGGAGACATGTTCATGTCCAATCTTGAAATAGATCGCTTTGAAGGTGGTGCTATACGAACTGTCAGTGGTATCCGGGGGCAGGTGAAGAAGAAAAAGATGGGAGGAAAACCAGAAGAAGTGCTTGCTAGGTGCACCTTTGAGGACAAAATTACGGGGAATGACATTGTTTTCCTTACTGGTTGGACACCAGTAGAAGTTCCTCAGTTTTATAATCCCTTGACAACAGCCCTACAACCTCGCGATCAGGTCTGGCAAGGGATGAAAACCACAGCTGAGCTGAGGAGAGAACACAATCTTCCTATTCCTGTTAGTCAAGATTCACTTTACAAGCCAATTGAAAGGAAGCGGAGGAAGTTCAACCCATTGGTGATCTCTAAGTCATTGCAAACAGCTCTCCCATTTGTTTCAAAGTTTAAGAACACACCCAGGAGAAGAAGGCCACCTATTGAAAATAGAAGAGCTGTTGTCATGGAGCCTCGTGAACGAAGAGTTCATGCTAGTGTTCAACAGCTTGGTTTGATTAGTAGTGACAAGAGAAAGAAGCGCAGGGCTAAGGATGACAAGAAAAGAAGAGAGATTGAAGCACGCAAAGCTAAAACCGAGCAGTTGAGAAAGCGCCAGAGAGAAGAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

842

Amino Acids

97.69

Weight (kDa)

9.05

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	123 - 196	3.6e-26	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	515 - 696	3.2e-55	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	555, 2103
AarI	CACCTGC	2 cut(s)	530, 1963
Acc36I	ACCTGC	2 cut(s)	530, 1963
AccI	GTMKAC	1 cut(s)	1014
AccII	CGCG	1 cut(s)	2133
AciI	CCGC	3 cut(s)	499, 1864, 2239
AclWI	GGATC	3 cut(s)	578, 1580, 1793
AcoI	YGGCCR	2 cut(s)	1233, 1363
AcsI	RAATTY	6 cut(s)	250, 333, 649, 1039, 1334, 1756
AcuI	CTGAAG	5 cut(s)	650, 903, 945, 1424, 1595
AfaI	GTAC	1 cut(s)	1679
AfiI	CCNNNNNNNGG	3 cut(s)	1513, 1736, 1972
AflII	CTTAAG	1 cut(s)	1673
AflIII	ACRYGT	1 cut(s)	1899
AgeI	ACCGGT	1 cut(s)	96
AhlI	ACTAGT	2 cut(s)	773, 1580
AjnI	CCWGG	2 cut(s)	44, 2318
Alw21I	GWGCWC	3 cut(s)	674, 1809, 2027
Alw26I	GTCTC	2 cut(s)	1606, 1890
Alw44I	GTGCAC	1 cut(s)	2023
AlwI	GGATC	3 cut(s)	578, 1580, 1793
AlwNI	CAGNNNCTG	1 cut(s)	1796
Ama87I	CYCGRG	1 cut(s)	1808
AoxI	GGCC	6 cut(s)	42, 185, 1233, 1363, 1717, 2330
ApaI	GGGCCC	1 cut(s)	1721
ApaLI	GTGCAC	1 cut(s)	2023
ApeKI	GCWGC	5 cut(s)	605, 851, 1115, 1775, 1790
ApoI	RAATTY	6 cut(s)	250, 333, 649, 1039, 1334, 1756
AseI	ATTAAT	1 cut(s)	714
AsiGI	ACCGGT	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	2439, 2511
AspS9I	GGNCC	5 cut(s)	42, 56, 229, 1717, 1718
AsuC2I	CCSGG	1 cut(s)	1967
AsuHPI	GGTGA	8 cut(s)	298, 560, 977, 1112, 1181, 1205, 1987, 2272
AsuII	TTCGAA	1 cut(s)	1492
AvaI	CYCGRG	1 cut(s)	1808
AvaII	GGWCC	2 cut(s)	56, 229
AxyI	CCTNAGG	1 cut(s)	60
BaeGI	GKGCMC	2 cut(s)	1721, 2027
BalI	TGGCCA	1 cut(s)	1235
BanII	GRGCYC	1 cut(s)	1721
BarI	GAAGNNNNNNTAC	2 cut(s)	648, 680
BauI	CACGAG	1 cut(s)	2370
BbsI	GAAGAC	3 cut(s)	951, 1583, 1886
Bbv12I	GWGCWC	3 cut(s)	674, 1809, 2027
BbvCI	CCTCAGC	2 cut(s)	601, 2171
BbvI	GCAGC	5 cut(s)	592, 838, 1102, 1787, 1802
BccI	CCATC	5 cut(s)	755, 1478, 1533, 1551, 1984
BciT130I	CCWGG	2 cut(s)	46, 2320
BciVI	GTATCC	4 cut(s)	763, 1302, 1459, 1973
BcnI	CCSGG	1 cut(s)	1967
BcoDI	GTCTC	2 cut(s)	1606, 1890
BcuI	ACTAGT	2 cut(s)	773, 1580
BfaI	CTAG	7 cut(s)	698, 774, 783, 1206, 1581, 2019, 2391
BfmI	CTRYAG	1 cut(s)	1421
BfoI	RGCGCY	1 cut(s)	2512
BfrI	CTTAAG	1 cut(s)	1673
BfuAI	ACCTGC	2 cut(s)	530, 1963
BfuI	GTATCC	4 cut(s)	763, 1302, 1459, 1973
BglII	AGATCT	1 cut(s)	1307
BisI	GCNGC	5 cut(s)	606, 852, 1116, 1776, 1791
BlpI	GCTNAGC	1 cut(s)	2166
BlsI	GCNGC	5 cut(s)	607, 853, 1117, 1777, 1792
Bme1390I	CCNGG	3 cut(s)	46, 1967, 2320
Bme18I	GGWCC	2 cut(s)	56, 229
BmeT110I	CYCGRG	1 cut(s)	1808
BmgT120I	GGNCC	5 cut(s)	42, 56, 229, 1717, 1718
BmiI	GGNNCC	4 cut(s)	57, 709, 1719, 2367
BmrFI	CCNGG	3 cut(s)	46, 1967, 2320
BmsI	GCATC	1 cut(s)	838
BpiI	GAAGAC	3 cut(s)	951, 1583, 1886
BpmI	CTGGAG	2 cut(s)	849, 1668
Bpu10I	CCTNAGC	3 cut(s)	601, 2171, 2445
Bpu1102I	GCTNAGC	1 cut(s)	2166
Bpu14I	TTCGAA	1 cut(s)	1492
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	1967
BsaJI	CCNNGG	2 cut(s)	1966, 2318
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	3 cut(s)	1513, 1736, 1972
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	8 cut(s)	731, 1055, 1102, 1195, 1631, 1741, 2074, 2081
Bse21I	CCTNAGG	1 cut(s)	60
Bse3DI	GCAATG	3 cut(s)	1660, 1663, 2273
BseBI	CCWGG	2 cut(s)	46, 2320
BseDI	CCNNGG	2 cut(s)	1966, 2318
BseGI	GGATG	5 cut(s)	373, 397, 904, 2157, 2455
BseLI	CCNNNNNNNGG	3 cut(s)	1513, 1736, 1972
BseMI	GCAATG	3 cut(s)	1660, 1663, 2273
BseMII	CTCAG	8 cut(s)	614, 615, 825, 1128, 1308, 2108, 2157, 2162
BseNI	ACTGG	8 cut(s)	731, 1055, 1102, 1195, 1631, 1741, 2074, 2081
BseRI	GAGGAG	4 cut(s)	426, 1256, 1424, 2188
BseSI	GKGCMC	2 cut(s)	1721, 2027
BseXI	GCAGC	5 cut(s)	592, 838, 1102, 1787, 1802
BsgI	GTGCAG	1 cut(s)	1281
Bsh1236I	CGCG	1 cut(s)	2133
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	6 cut(s)	44, 187, 1235, 1365, 1719, 2332
BshTI	ACCGGT	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	3 cut(s)	674, 1809, 2027
BsiHKCI	CYCGRG	1 cut(s)	1808
BsiSI	CCGG	2 cut(s)	97, 1966
BslFI	GGGAC	2 cut(s)	25, 633
BslI	CCNNNNNNNGG	3 cut(s)	1513, 1736, 1972
BsmAI	GTCTC	2 cut(s)	1606, 1890
BsmBI	CGTCTC	1 cut(s)	1606
BsmFI	GGGAC	2 cut(s)	25, 633
BsnI	GGCC	6 cut(s)	44, 187, 1235, 1365, 1719, 2332
BsoBI	CYCGRG	1 cut(s)	1808
Bsp119I	TTCGAA	1 cut(s)	1492
Bsp120I	GGGCCC	1 cut(s)	1717
Bsp1286I	GDGCHC	4 cut(s)	674, 1721, 1809, 2027
Bsp143I	GATC	9 cut(s)	415, 583, 1307, 1585, 1648, 1785, 1924, 2134, 2262
Bsp1720I	GCTNAGC	1 cut(s)	2166
Bsp68I	TCGCGA	1 cut(s)	2133
BspACI	CCGC	3 cut(s)	499, 1864, 2239
BspANI	GGCC	6 cut(s)	44, 187, 1235, 1365, 1719, 2332
BspCNI	CTCAG	8 cut(s)	614, 615, 824, 1129, 1309, 2107, 2158, 2163
BspFNI	CGCG	1 cut(s)	2133
BspHI	TCATGA	1 cut(s)	1522
BspLI	GGNNCC	4 cut(s)	57, 709, 1719, 2367
BspMAI	CTGCAG	1 cut(s)	1425
BspMI	ACCTGC	2 cut(s)	530, 1963
BspPI	GGATC	3 cut(s)	578, 1580, 1793
BspQI	GCTCTTC	1 cut(s)	2344
BspT104I	TTCGAA	1 cut(s)	1492
BspTI	CTTAAG	1 cut(s)	1673
BsrDI	GCAATG	3 cut(s)	1660, 1663, 2273
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	8 cut(s)	731, 1055, 1102, 1195, 1631, 1741, 2074, 2081
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	1966, 2318
BssMI	GATC	9 cut(s)	415, 583, 1307, 1585, 1648, 1785, 1924, 2134, 2262
BssSI	CACGAG	1 cut(s)	2370
Bst2BI	CACGAG	1 cut(s)	2370
Bst2UI	CCWGG	2 cut(s)	46, 2320
Bst4CI	ACNGT	7 cut(s)	136, 161, 1022, 1498, 1512, 1700, 1954
Bst6I	CTCTTC	4 cut(s)	1065, 2344, 2374, 2458
BstAFI	CTTAAG	1 cut(s)	1673
BstAPI	GCANNNNNTGC	1 cut(s)	1796
BstBI	TTCGAA	1 cut(s)	1492
BstC8I	GCNNGC	3 cut(s)	1670, 2016, 2479
BstF5I	GGATG	5 cut(s)	373, 397, 904, 2157, 2455
BstFNI	CGCG	1 cut(s)	2133
BstH2I	RGCGCY	1 cut(s)	2512
BstHHI	GCGC	2 cut(s)	2439, 2511
BstKTI	GATC	9 cut(s)	418, 586, 1310, 1588, 1651, 1788, 1927, 2137, 2265
BstMAI	GTCTC	2 cut(s)	1606, 1890
BstMBI	GATC	9 cut(s)	415, 583, 1307, 1585, 1648, 1785, 1924, 2134, 2262
BstMCI	CGRYCG	1 cut(s)	97
BstNI	CCWGG	2 cut(s)	46, 2320
BstNSI	RCATGY	1 cut(s)	1903
BstSCI	CCNGG	3 cut(s)	44, 1965, 2318
BstSFI	CTRYAG	1 cut(s)	1421
BstSLI	GKGCMC	2 cut(s)	1721, 2027
BstUI	CGCG	1 cut(s)	2133
BstV1I	GCAGC	5 cut(s)	592, 838, 1102, 1787, 1802
BstV2I	GAAGAC	3 cut(s)	951, 1583, 1886
BstX2I	RGATCY	1 cut(s)	1307
BstXI	CCANNNNNNTGG	1 cut(s)	1714
BstYI	RGATCY	1 cut(s)	1307
Bsu36I	CCTNAGG	1 cut(s)	60
BsuI	GTATCC	4 cut(s)	763, 1302, 1459, 1973
BsuRI	GGCC	6 cut(s)	44, 187, 1235, 1365, 1719, 2332
BtsCI	GGATG	5 cut(s)	373, 397, 904, 2157, 2455
BtsIMutI	CAGTG	5 cut(s)	1095, 1134, 1503, 1696, 1963
BtuMI	TCGCGA	1 cut(s)	2133
BveI	ACCTGC	2 cut(s)	530, 1963
Cac8I	GCNNGC	3 cut(s)	1670, 2016, 2479
CaiI	CAGNNNCTG	1 cut(s)	1796
CciI	TCATGA	1 cut(s)	1522
CfoI	GCGC	2 cut(s)	2439, 2511
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	5 cut(s)	42, 56, 229, 1717, 1718
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	1678
CspAI	ACCGGT	1 cut(s)	96
CviQI	GTAC	1 cut(s)	1678
DpnI	GATC	9 cut(s)	417, 585, 1309, 1587, 1650, 1787, 1926, 2136, 2264
DpnII	GATC	9 cut(s)	415, 583, 1307, 1585, 1648, 1785, 1924, 2134, 2262
EaeI	YGGCCR	2 cut(s)	1233, 1363
Eam1104I	CTCTTC	4 cut(s)	1065, 2344, 2374, 2458
EarI	CTCTTC	4 cut(s)	1065, 2344, 2374, 2458
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	1721
Eco47I	GGWCC	2 cut(s)	56, 229
Eco57I	CTGAAG	5 cut(s)	650, 903, 945, 1424, 1595
Eco81I	CCTNAGG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	1808
EcoO109I	RGGNCCY	2 cut(s)	56, 1718
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	44, 2318
EcoT38I	GRGCYC	1 cut(s)	1721
Esp3I	CGTCTC	1 cut(s)	1606
FalI	AAGNNNNNCTT	6 cut(s)	722, 754, 1998, 2030, 2199, 2231
FaqI	GGGAC	2 cut(s)	25, 633
FauI	CCCGC	2 cut(s)	492, 1871
FauNDI	CATATG	3 cut(s)	453, 1324, 1692
FblI	GTMKAC	1 cut(s)	1014
Fnu4HI	GCNGC	5 cut(s)	606, 852, 1116, 1776, 1791
FokI	GGATG	5 cut(s)	360, 384, 911, 2164, 2462
FriOI	GRGCYC	1 cut(s)	1721
Fsp4HI	GCNGC	5 cut(s)	606, 852, 1116, 1776, 1791
FspBI	CTAG	7 cut(s)	698, 774, 783, 1206, 1581, 2019, 2391
GlaI	GCGC	2 cut(s)	2438, 2510
GluI	GCNGC	5 cut(s)	606, 852, 1116, 1776, 1791
GsuI	CTGGAG	2 cut(s)	849, 1668
HaeII	RGCGCY	1 cut(s)	2512
HaeIII	GGCC	6 cut(s)	44, 187, 1235, 1365, 1719, 2332
HapII	CCGG	2 cut(s)	97, 1966
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	2 cut(s)	2439, 2511
Hin6I	GCGC	2 cut(s)	2437, 2509
HinP1I	GCGC	2 cut(s)	2437, 2509
HincII	GTYRAC	1 cut(s)	1015
HindII	GTYRAC	1 cut(s)	1015
HindIII	AAGCTT	1 cut(s)	1259
HinfI	GANTC	7 cut(s)	90, 529, 779, 866, 956, 1319, 2210
HpaII	CCGG	2 cut(s)	97, 1966
HphI	GGTGA	8 cut(s)	298, 560, 977, 1112, 1181, 1205, 1987, 2272
Hpy166II	GTNNAC	4 cut(s)	1015, 1680, 2025, 2375
Hpy188I	TCNGA	5 cut(s)	669, 814, 955, 1318, 1575
Hpy8I	GTNNAC	4 cut(s)	1015, 1680, 2025, 2375
Hpy99I	CGWCG	1 cut(s)	1019
HpyAV	CCTTC	9 cut(s)	610, 674, 760, 989, 1324, 1399, 1653, 1928, 2322
HpyCH4III	ACNGT	7 cut(s)	136, 161, 1022, 1498, 1512, 1700, 1954
HpyCH4IV	ACGT	3 cut(s)	212, 349, 757
HpySE526I	ACGT	3 cut(s)	212, 349, 757
HspAI	GCGC	2 cut(s)	2437, 2509
Kzo9I	GATC	9 cut(s)	415, 583, 1307, 1585, 1648, 1785, 1924, 2134, 2262
LguI	GCTCTTC	1 cut(s)	2344
LmnI	GCTCC	4 cut(s)	19, 210, 1243, 2365
Lsp1109I	GCAGC	5 cut(s)	592, 838, 1102, 1787, 1802
LweI	GCATC	1 cut(s)	838
MaeI	CTAG	7 cut(s)	698, 774, 783, 1206, 1581, 2019, 2391
MaeII	ACGT	3 cut(s)	212, 349, 757
MaeIII	GTNAC	6 cut(s)	430, 478, 1093, 1169, 1498, 2420
MalI	GATC	9 cut(s)	417, 585, 1309, 1587, 1650, 1787, 1926, 2136, 2264
MboI	GATC	9 cut(s)	415, 583, 1307, 1585, 1648, 1785, 1924, 2134, 2262
MfeI	CAATTG	3 cut(s)	1084, 1357, 2226
MflI	RGATCY	1 cut(s)	1307
MhlI	GDGCHC	4 cut(s)	674, 1721, 1809, 2027
MlsI	TGGCCA	1 cut(s)	1235
MluNI	TGGCCA	1 cut(s)	1235
MlyI	GAGTC	3 cut(s)	860, 965, 1328
MmeI	TCCRAC	3 cut(s)	726, 1494, 2054
Mox20I	TGGCCA	1 cut(s)	1235
MscI	TGGCCA	1 cut(s)	1235
MseI	TTAA	9 cut(s)	126, 257, 714, 723, 1281, 1341, 1544, 1674, 2307
MslI	CAYNNNNRTG	3 cut(s)	402, 1904, 2391
Msp20I	TGGCCA	1 cut(s)	1235
MspA1I	CMGCKG	2 cut(s)	605, 2165
MspCI	CTTAAG	1 cut(s)	1673
MspI	CCGG	2 cut(s)	97, 1966
MspR9I	CCNGG	3 cut(s)	46, 1967, 2320
MunI	CAATTG	3 cut(s)	1084, 1357, 2226
MvaI	CCWGG	2 cut(s)	46, 2320
MvnI	CGCG	1 cut(s)	2133
NciI	CCSGG	1 cut(s)	1967
NdeI	CATATG	3 cut(s)	453, 1324, 1692
NdeII	GATC	9 cut(s)	415, 583, 1307, 1585, 1648, 1785, 1924, 2134, 2262
NlaIV	GGNNCC	4 cut(s)	57, 709, 1719, 2367
NmeAIII	GCCGAG	1 cut(s)	1391
NmuCI	GTSAC	6 cut(s)	430, 478, 1093, 1169, 1498, 2420
NruI	TCGCGA	1 cut(s)	2133
NspI	RCATGY	1 cut(s)	1903
NspV	TTCGAA	1 cut(s)	1492
PaeR7I	CTCGAG	1 cut(s)	1808
PagI	TCATGA	1 cut(s)	1522
PaqCI	CACCTGC	2 cut(s)	530, 1963
PceI	AGGCCT	1 cut(s)	187
PciI	ACATGT	1 cut(s)	1899
PciSI	GCTCTTC	1 cut(s)	2344
PfeI	GAWTC	4 cut(s)	90, 529, 779, 2210
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	5 cut(s)	607, 853, 1117, 1777, 1792
PleI	GAGTC	3 cut(s)	860, 964, 1327
PpsI	GAGTC	3 cut(s)	860, 964, 1327
PpuMI	RGGWCCY	1 cut(s)	56
PscI	ACATGT	1 cut(s)	1899
PshBI	ATTAAT	1 cut(s)	714
PsiI	TTATAA	2 cut(s)	555, 2103
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	44, 2318
PspGI	CCWGG	2 cut(s)	44, 2318
PspN4I	GGNNCC	4 cut(s)	57, 709, 1719, 2367
PspOMI	GGGCCC	1 cut(s)	1717
PspPI	GGNCC	5 cut(s)	42, 56, 229, 1717, 1718
PspPPI	RGGWCCY	1 cut(s)	56
PspXI	VCTCGAGB	1 cut(s)	1808
PstI	CTGCAG	1 cut(s)	1425
PstNI	CAGNNNCTG	1 cut(s)	1796
PsuI	RGATCY	1 cut(s)	1307
PvuII	CAGCTG	2 cut(s)	605, 2165
RruI	TCGCGA	1 cut(s)	2133
RsaI	GTAC	1 cut(s)	1679
RsaNI	GTAC	1 cut(s)	1678
RseI	CAYNNNNRTG	3 cut(s)	402, 1904, 2391
SalI	GTCGAC	1 cut(s)	1013
SapI	GCTCTTC	1 cut(s)	2344
SaqAI	TTAA	9 cut(s)	126, 257, 714, 723, 1281, 1341, 1544, 1674, 2307
SatI	GCNGC	5 cut(s)	606, 852, 1116, 1776, 1791
Sau3AI	GATC	9 cut(s)	415, 583, 1307, 1585, 1648, 1785, 1924, 2134, 2262
Sau96I	GGNCC	5 cut(s)	42, 56, 229, 1717, 1718
SchI	GAGTC	3 cut(s)	860, 965, 1328
ScrFI	CCNGG	3 cut(s)	46, 1967, 2320
SduI	GDGCHC	4 cut(s)	674, 1721, 1809, 2027
SfaNI	GCATC	1 cut(s)	838
SfcI	CTRYAG	1 cut(s)	1421
Sfr274I	CTCGAG	1 cut(s)	1808
SfuI	TTCGAA	1 cut(s)	1492
SinI	GGWCC	2 cut(s)	56, 229
SlaI	CTCGAG	1 cut(s)	1808
SmiMI	CAYNNNNRTG	3 cut(s)	402, 1904, 2391
SmlI	CTYRAG	3 cut(s)	85, 1673, 1808
SmoI	CTYRAG	3 cut(s)	85, 1673, 1808
SpeI	ACTAGT	2 cut(s)	773, 1580
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	3 cut(s)	499, 1864, 2239
SspI	AATATT	1 cut(s)	680
SspMI	CTAG	7 cut(s)	698, 774, 783, 1206, 1581, 2019, 2391
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	3 cut(s)	44, 1965, 2318
TaaI	ACNGT	7 cut(s)	136, 161, 1022, 1498, 1512, 1700, 1954
TaiI	ACGT	3 cut(s)	215, 352, 760
TaqI	TCGA	4 cut(s)	93, 1014, 1492, 1809
TatI	WGTACW	1 cut(s)	1677
TfiI	GAWTC	4 cut(s)	90, 529, 779, 2210
Tru1I	TTAA	9 cut(s)	126, 257, 714, 723, 1281, 1341, 1544, 1674, 2307
Tru9I	TTAA	9 cut(s)	126, 257, 714, 723, 1281, 1341, 1544, 1674, 2307
TscAI	CASTG	5 cut(s)	1102, 1141, 1503, 1703, 1963
TseFI	GTSAC	6 cut(s)	430, 478, 1093, 1169, 1498, 2420
TseI	GCWGC	5 cut(s)	605, 851, 1115, 1775, 1790
Tsp45I	GTSAC	6 cut(s)	430, 478, 1093, 1169, 1498, 2420
TspRI	CASTG	5 cut(s)	1102, 1141, 1503, 1703, 1963
Vha464I	CTTAAG	1 cut(s)	1673
VneI	GTGCAC	1 cut(s)	2023
VpaK11BI	GGWCC	2 cut(s)	56, 229
VspI	ATTAAT	1 cut(s)	714
XapI	RAATTY	6 cut(s)	250, 333, 649, 1039, 1334, 1756
XbaI	TCTAGA	1 cut(s)	782
XceI	RCATGY	1 cut(s)	1903
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1738
XhoI	CTCGAG	1 cut(s)	1808
XmiI	GTMKAC	1 cut(s)	1014
XspI	CTAG	7 cut(s)	698, 774, 783, 1206, 1581, 2019, 2391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.