Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

14383038 .. 14398175

Gene Structure 15138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3636 bp

ATGATAGATGGCAGGAGTAGTGAGCGGTCGCACAAGGCTCACAGGTCCCGGCAGTCGGGTGCCAAGGCCAACAAGAAGAATAAGAAGCCCCAGAAAGAGCACAACCCCAAGGCATTCGCTTTCAGCTCCACTGTGAAAGCCAAGCGTCTCCAGTCTCGCGCCGTCGAGAAAGAGCAGCGCAGACTTCATCTTCCCACCATTGATCGCTCTTACGGCCTCGACCCGCCTCCCTTTGTTGTTCTTGTCCATGGACCTCCCAAGGTTGGCAAGTCTCTGCTGATTAAGTGCCTCGTAAAGCATTACACCAAACATGATTTACCCAGTGCCAGTGTCCAAGGCCCCATCACCATTGTATCAGGGAAGCAGCGCCGCCTTCAGTTTGTGGAGTGCCCCAATGATATCAATGGTATGATTGATGCCGCTAAGTTCGCTGATTTAGCATTGCTTCTTATCGATGGAAGCTATGGTTTCGAAATGGAAACTTTTGAGTTCCTTAATATATTGCAAGTTCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAACTTCAAAGATGCAAAGAAACTCAGGAAAACAAAGCAGCATCTCAAGCATCGCTTCTGGACTGAAATATATGACGGTGCTAAGTTGTTTTATTTATCAGGTCTTATTCATGAAAAGTACGTCAAACGTGAAATTCACAATCTCGCTCGTTTCATATCTGTTATGAAGTTTCATCCTTTGTCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATATCACTCCCCCTGAGAAAGTGCGCTTGAATAAGAAATGTGATAGAAATATCACACTTTATGGTTATCTGCGGGGGTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTACAGTGTTGCCGGTATGACAGGCTTAGCTGATCCGTGTCCTTTACCCTCAGCGGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAACTGTTTTATGCGCCTATGTCTGGGCTTGGGGATCTCATGTATGACAAAGATGCAGTGTATATAAATTTGAATGATCACTCTGTTCAGTTTTCAAAACAGGATGAAAAGGGTAAAGCAATGAACAAAGGAGAGCATGATGATGCGGGTGTGAGCATGGTTAAAAGTCTTCAAAACCCAAAATATTCGCTTGATGAAAAGTTGGAGCAGAGCATCATTAACTTTTATGTCCAGAAACCGAAATCGGAACCTCAAAATGATAACAATGACAAATCCAGAGAAAGAGTTCGAATGATAGAGCCTTTAGAGGAACATCAGTTTGAGGAAGCGATGAAAGCTGGTGGGTCTGGTCAGGAAAGTGATGTTGAGGATATTGATGGCTCAGAATCAATATCTTTTCAGAATGATGGTGCTCATAATGTTGCAATAACTAAAAATGATTCTAGTGAATCTGATAGAGAAAATGGTGATGTATCAGATCGAGATGATGTTAATCTTAAAGGTCACTTGAAGGAACATGTTGAGTTTCATGAAGGAAGGTCAAGGAGAAAAGTAGTCTTTGAAAATGATCTTAATCCTACTGATATGGAGGATTCAGAAGAGTCGGAAGATGATGACGATGGTGGTGATAGTGATGCAGATAATCATACCTCTTCTGGGTCAGAGTCTTCAGAGGAAAATAGAGAAATCCATGAGACAGATGATGACGTGGGAAACATAGCAAAGTGGAAAGAGTCTTTGGCAGAACGGACATTCTCAAGACAAACCACTAACCTTATGCAACTTGTATATGGGAAATCTTTGTCGGTTTCAACTAAAGCCAATGAAGAACAAGACAGTAGTGCAGATGAGGAAAGTGACGGAGAAGACTTTTTTAAGCCAAAAGGGGACGAGATCAAGAAACATACAGTAGAAGTAGGAAAGTGCAATGTTGAGGACTCTTCCAAATTTACAAATCCTTCAATCAAAGATTGGAATGATAAAAAGCTTATAGAAGTTGTGCGCAATCGTTTTGTCACTGGTGATTGGTCAAAGGCTGCTAAGAGAAATCAAGACCCGGCTACATTTGAAAATGAAGAGGAAGATGCTGTATTTGGTGACTTTGAAGATCTGGAAACGGGTGAGAAGCATGATGGATACAATGCTAATGATACAAGCAAAGTTGCAAACAAGAAGAAAGCTGGCTTAGATGAGGAAGAGCGGAGGCTTAAAAAGCTTGCTCTTCGTGCCAAGTTTGATGCTCAATATGACGATCCTGATACAAGTGAAGGGGAACCTGATGATACACAAGTAAGCCAGTTTGGACGAGATCGAGCAAAAGAAAGCAGCTATGTTGACAAGTTGAAGGAGGAGATTGAACTTCGGAAGCAAATGAATATAGCTGAACTCAATGACCTTGATGAGGGCACCCGATTAGAGGTAGAGGGTTTCCAGACAGGGACTTACCTTCGGTTGGAAGTTCATGATGTTCCGTATGAGATGTATGAATATTTTCATCCCTGTCATCCTATTTTGGTTGGAGGAATTGGTCTCGGGGAAGAAAGCACTGGATACATGCAGGTCAGGTTAAAGCGGCACAGATGGCACAAGAAAGTGCTAAAGACTAGTGACCCCATCATTGTATCTCTTGGGTGGAGACGTTACCAAACAATTCCTGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTACACTCCAGAACACATGCATTGCCTGGCAATGTTTTGGGGTCCTCTTGCCCCTCCCAATACTGGTCTGGTTGCTTTCCAAAATTTATCAAACAATCAGGCGACGTTTAGGATCACCGCCACAGGAGTTGTGCTTGAGTTCAACCATGCATCCCGAATAGTGAAGAAACTCAAACTAGTTGGTTACCCTTGCAAGATATTTAAGAATACAGCACTTATAAAAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCTGTTCGAACAGTCAGTGGCATCCGAGGGCAGGTGAAAAAGGCTGCAAAAGAAGAAATCGGTAACCAACCGAAAAAGATGGGTGGACAACCTAAGGAAGGAATTGTTAGGTGTACTTTTGAGGACAAAATTAAGATGAGTGATATTGTGTTTCTGCGCGCGTGGACTCAGGTTGATGTTCCTTGCTTCTATAACCCATTAACCACATCTCTGCAACCCCGTGATCACACCTGGCAAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGAACGCAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCAATTGAAAGGAAGCAGAGGAAGTTCAACCCACTGGTGATTCCCAAAGCGATACAAAAAAATCTTCCATTTAAATCAAAGCCTAAGGACACACCGAGTAGAAAGAAAAAACTTCTTGAAGATAGAAGAGCTGTTGTGAGGGAGCCTTATGAATTGAAAATATCTGCTCTGGTTCAAAATCTTATGTTAATCAGATCTGACAAGTTAAAGAAGCGCAAGATAAAGGATGAGAAAAAAAGAAAAGAAATTGAAGTACAGAAAGCCAAAGATGAGCAGGTGTCAAGAAAGCGCCAGAGAGAAGAACGACGAGAGAGATACCGGGTGCAAGACAAAGCTCAGAAGAAAATGAGGAGACGTGCCGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1212

Amino Acids

138.73

Weight (kDa)

8.79

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	240 - 313	3.3e-26	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	726 - 1044	3.2e-86	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2906
AarI	CACCTGC	3 cut(s)	881, 2977, 3532
Acc16I	TGCGCA	1 cut(s)	1991
Acc36I	ACCTGC	4 cut(s)	881, 2536, 2977, 3532
AccB1I	GGYRCC	2 cut(s)	59, 2393
AccBSI	CCGCTC	2 cut(s)	25, 2188
AccII	CGCG	3 cut(s)	159, 3114, 3116
AclWI	GGATC	4 cut(s)	929, 1029, 2234, 2807
AcoI	YGGCCR	1 cut(s)	957
AcsI	RAATTY	4 cut(s)	684, 1054, 1934, 2770
AcuI	CTGAAG	2 cut(s)	359, 1641
AfaI	GTAC	4 cut(s)	671, 2690, 3070, 3522
AflII	CTTAAG	1 cut(s)	2684
AflIII	ACRYGT	1 cut(s)	1504
AhlI	ACTAGT	2 cut(s)	2591, 2863
AjiI	CACGTC	2 cut(s)	1696, 3623
AjnI	CCWGG	2 cut(s)	2712, 3185
AjuI	GAANNNNNNNTTGG	2 cut(s)	1709, 1741
AloI	GAACNNNNNNTCC	2 cut(s)	733, 765
Alw21I	GWGCWC	2 cut(s)	102, 1402
Alw26I	GTCTC	7 cut(s)	152, 159, 276, 1676, 2522, 2617, 3613
AlwI	GGATC	4 cut(s)	929, 1029, 2234, 2807
Ama87I	CYCGRG	1 cut(s)	2519
AoxI	GGCC	4 cut(s)	66, 214, 337, 957
ApeKI	GCWGC	7 cut(s)	175, 364, 589, 973, 2024, 2313, 2999
ApoI	RAATTY	4 cut(s)	684, 1054, 1934, 2770
Asp700I	GAANNNNTTC	2 cut(s)	1272, 2478
AspS9I	GGNCC	4 cut(s)	45, 251, 338, 2729
AsuC2I	CCSGG	3 cut(s)	49, 2045, 3587
AsuII	TTCGAA	3 cut(s)	471, 1276, 2962
AvaI	CYCGRG	1 cut(s)	2519
AvaII	GGWCC	3 cut(s)	45, 251, 2729
AxyI	CCTNAGG	2 cut(s)	3048, 3351
BaeGI	GKGCMC	2 cut(s)	392, 2396
BaeI	ACNNNNGTAYC	4 cut(s)	336, 369, 2262, 2295
BanI	GGYRCC	2 cut(s)	59, 2393
BbsI	GAAGAC	3 cut(s)	1148, 1647, 1860
Bbv12I	GWGCWC	2 cut(s)	102, 1402
BbvCI	CCTCAGC	1 cut(s)	952
BbvI	GCAGC	7 cut(s)	187, 376, 601, 960, 2011, 2325, 2986
BceAI	ACGGC	2 cut(s)	146, 229
BciT130I	CCWGG	2 cut(s)	2714, 3187
BciVI	GTATCC	2 cut(s)	2117, 2531
BclI	TGATCA	2 cut(s)	1063, 3178
BcnI	CCSGG	3 cut(s)	49, 2045, 3587
BcoDI	GTCTC	7 cut(s)	152, 159, 276, 1676, 2522, 2617, 3613
BcuI	ACTAGT	2 cut(s)	2591, 2863
BfaI	CTAG	4 cut(s)	761, 1431, 2592, 2864
BfmI	CTRYAG	1 cut(s)	3204
BfoI	RGCGCY	2 cut(s)	370, 3559
BfrI	CTTAAG	1 cut(s)	2684
BfuAI	ACCTGC	4 cut(s)	881, 2536, 2977, 3532
BfuI	GTATCC	2 cut(s)	2117, 2531
BglII	AGATCT	3 cut(s)	2095, 2926, 3461
BlpI	GCTNAGC	1 cut(s)	928
Bme1390I	CCNGG	5 cut(s)	49, 2045, 2714, 3187, 3587
Bme18I	GGWCC	3 cut(s)	45, 251, 2729
BmeT110I	CYCGRG	1 cut(s)	2519
BmgBI	CACGTC	2 cut(s)	1696, 3623
BmgT120I	GGNCC	4 cut(s)	45, 251, 338, 2729
BmiI	GGNNCC	8 cut(s)	47, 61, 340, 1236, 2262, 2395, 2730, 3411
BmrFI	CCNGG	5 cut(s)	49, 2045, 2714, 3187, 3587
BmrI	ACTGGG	1 cut(s)	315
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	3 cut(s)	1148, 1647, 1860
BplI	GAGNNNNNCTC	2 cut(s)	730, 762
BpmI	CTGGAG	2 cut(s)	134, 2679
Bpu10I	CCTNAGC	1 cut(s)	952
Bpu1102I	GCTNAGC	1 cut(s)	928
Bpu14I	TTCGAA	3 cut(s)	471, 1276, 2962
BpuEI	CTTGAG	3 cut(s)	581, 1729, 2843
BpuMI	CCSGG	3 cut(s)	49, 2045, 3587
Bsa29I	ATCGAT	1 cut(s)	453
BsaBI	GATNNNNATC	2 cut(s)	1479, 1560
BsaI	GGTCTC	1 cut(s)	2522
BsaJI	CCNNGG	7 cut(s)	63, 108, 247, 258, 334, 2980, 3627
Bse118I	RCCGGY	1 cut(s)	914
Bse1I	ACTGG	8 cut(s)	151, 321, 327, 2011, 2284, 2539, 2755, 3306
Bse21I	CCTNAGG	2 cut(s)	3048, 3351
Bse3DI	GCAATG	6 cut(s)	440, 1113, 1921, 2671, 2707, 2724
Bse8I	GATNNNNATC	2 cut(s)	1479, 1560
BseBI	CCWGG	2 cut(s)	2714, 3187
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	7 cut(s)	63, 108, 247, 258, 334, 2980, 3627
BseGI	GGATG	9 cut(s)	724, 748, 1096, 2482, 2491, 2837, 2976, 3201, 3499
BseJI	GATNNNNATC	2 cut(s)	1479, 1560
BseMI	GCAATG	6 cut(s)	440, 1113, 1921, 2671, 2707, 2724
BseMII	CTCAG	8 cut(s)	589, 783, 966, 1383, 2937, 3137, 3201, 3617
BseNI	ACTGG	8 cut(s)	151, 321, 327, 2011, 2284, 2539, 2755, 3306
BsePI	GCGCGC	1 cut(s)	3112
BseRI	GAGGAG	3 cut(s)	2351, 3232, 3631
BseSI	GKGCMC	2 cut(s)	392, 2396
BseXI	GCAGC	7 cut(s)	187, 376, 601, 960, 2011, 2325, 2986
BsgI	GTGCAG	1 cut(s)	1851
Bsh1236I	CGCG	3 cut(s)	159, 3114, 3116
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	4 cut(s)	68, 216, 339, 959
BshNI	GGYRCC	2 cut(s)	59, 2393
BshVI	ATCGAT	1 cut(s)	453
BsiEI	CGRYCG	1 cut(s)	29
BsiHKAI	GWGCWC	2 cut(s)	102, 1402
BsiHKCI	CYCGRG	1 cut(s)	2519
BsiSI	CCGG	4 cut(s)	49, 915, 2045, 3586
BslFI	GGGAC	3 cut(s)	31, 1889, 2440
BsmAI	GTCTC	7 cut(s)	152, 159, 276, 1676, 2522, 2617, 3613
BsmBI	CGTCTC	3 cut(s)	152, 2617, 3613
BsmFI	GGGAC	3 cut(s)	31, 1889, 2440
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	4 cut(s)	68, 216, 339, 959
Bso31I	GGTCTC	1 cut(s)	2522
BsoBI	CYCGRG	1 cut(s)	2519
Bsp119I	TTCGAA	3 cut(s)	471, 1276, 2962
Bsp1286I	GDGCHC	4 cut(s)	102, 392, 1402, 2396
Bsp1720I	GCTNAGC	1 cut(s)	928
Bsp19I	CCATGG	1 cut(s)	247
BspANI	GGCC	4 cut(s)	68, 216, 339, 959
BspCNI	CTCAG	8 cut(s)	588, 784, 965, 1382, 2936, 3136, 3202, 3616
BspDI	ATCGAT	1 cut(s)	453
BspFNI	CGCG	3 cut(s)	159, 3114, 3116
BspHI	TCATGA	3 cut(s)	661, 1516, 2449
BspLI	GGNNCC	8 cut(s)	47, 61, 340, 1236, 2262, 2395, 2730, 3411
BspMI	ACCTGC	4 cut(s)	881, 2536, 2977, 3532
BspPI	GGATC	4 cut(s)	929, 1029, 2234, 2807
BspQI	GCTCTTC	3 cut(s)	2178, 2214, 3388
BspT104I	TTCGAA	3 cut(s)	471, 1276, 2962
BspT107I	GGYRCC	2 cut(s)	59, 2393
BspTI	CTTAAG	1 cut(s)	2684
BspTNI	GGTCTC	1 cut(s)	2522
BsrBI	CCGCTC	2 cut(s)	25, 2188
BsrDI	GCAATG	6 cut(s)	440, 1113, 1921, 2671, 2707, 2724
BsrFI	RCCGGY	1 cut(s)	914
BsrI	ACTGG	8 cut(s)	151, 321, 327, 2011, 2284, 2539, 2755, 3306
BssAI	RCCGGY	1 cut(s)	914
BssECI	CCNNGG	7 cut(s)	63, 108, 247, 258, 334, 2980, 3627
BssHII	GCGCGC	1 cut(s)	3112
BssT1I	CCWWGG	5 cut(s)	63, 108, 247, 258, 334
Bst2UI	CCWGG	2 cut(s)	2714, 3187
Bst4CI	ACNGT	8 cut(s)	133, 629, 908, 993, 1826, 1897, 2968, 3205
Bst6I	CTCTTC	7 cut(s)	1581, 1645, 1933, 2058, 2178, 2214, 3388
BstAFI	CTTAAG	1 cut(s)	2684
BstAPI	GCANNNNNTGC	1 cut(s)	2680
BstBI	TTCGAA	3 cut(s)	471, 1276, 2962
BstC8I	GCNNGC	4 cut(s)	2170, 2205, 2681, 3114
BstDSI	CCRYGG	1 cut(s)	247
BstEII	GGTNACC	2 cut(s)	2870, 3017
BstENI	CCTNNNNNAGG	2 cut(s)	2387, 3051
BstF5I	GGATG	9 cut(s)	724, 748, 1096, 2482, 2491, 2837, 2976, 3201, 3499
BstFNI	CGCG	3 cut(s)	159, 3114, 3116
BstH2I	RGCGCY	2 cut(s)	370, 3559
BstMAI	GTCTC	7 cut(s)	152, 159, 276, 1676, 2522, 2617, 3613
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	9 cut(s)	213, 428, 437, 598, 1322, 2200, 2213, 2569, 2680
BstNI	CCWGG	2 cut(s)	2714, 3187
BstNSI	RCATGY	4 cut(s)	1508, 2545, 2683, 2707
BstPI	GGTNACC	2 cut(s)	2870, 3017
BstSCI	CCNGG	5 cut(s)	47, 2043, 2712, 3185, 3585
BstSFI	CTRYAG	1 cut(s)	3204
BstSLI	GKGCMC	2 cut(s)	392, 2396
BstUI	CGCG	3 cut(s)	159, 3114, 3116
BstV1I	GCAGC	7 cut(s)	187, 376, 601, 960, 2011, 2325, 2986
BstV2I	GAAGAC	3 cut(s)	1148, 1647, 1860
BstX2I	RGATCY	4 cut(s)	1021, 2095, 2926, 3461
BstYI	RGATCY	4 cut(s)	1021, 2095, 2926, 3461
Bsu15I	ATCGAT	1 cut(s)	453
Bsu36I	CCTNAGG	2 cut(s)	3048, 3351
BsuI	GTATCC	2 cut(s)	2117, 2531
BsuRI	GGCC	4 cut(s)	68, 216, 339, 959
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	247
BtgZI	GCGATG	3 cut(s)	587, 1331, 2660
BtrI	CACGTC	2 cut(s)	1696, 3623
BtsCI	GGATG	9 cut(s)	724, 748, 1096, 2482, 2491, 2837, 2976, 3201, 3499
BtsI	GCAGTG	1 cut(s)	1050
BtsIMutI	CAGTG	9 cut(s)	129, 328, 334, 913, 1050, 2004, 2532, 2977, 3299
BveI	ACCTGC	4 cut(s)	881, 2536, 2977, 3532
Cac8I	GCNNGC	4 cut(s)	2170, 2205, 2681, 3114
CciI	TCATGA	3 cut(s)	661, 1516, 2449
Cfr10I	RCCGGY	1 cut(s)	914
Cfr13I	GGNCC	4 cut(s)	45, 251, 338, 2729
ClaI	ATCGAT	1 cut(s)	453
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	4 cut(s)	670, 2689, 3069, 3521
CspCI	CAANNNNNGTGG	2 cut(s)	2797, 2832
CviQI	GTAC	4 cut(s)	670, 2689, 3069, 3521
DraI	TTTAAA	1 cut(s)	3340
EaeI	YGGCCR	1 cut(s)	957
Eam1104I	CTCTTC	7 cut(s)	1581, 1645, 1933, 2058, 2178, 2214, 3388
EarI	CTCTTC	7 cut(s)	1581, 1645, 1933, 2058, 2178, 2214, 3388
Eco130I	CCWWGG	5 cut(s)	63, 108, 247, 258, 334
Eco31I	GGTCTC	1 cut(s)	2522
Eco32I	GATATC	2 cut(s)	400, 781
Eco47I	GGWCC	3 cut(s)	45, 251, 2729
Eco57I	CTGAAG	2 cut(s)	359, 1641
Eco81I	CCTNAGG	2 cut(s)	3048, 3351
Eco88I	CYCGRG	1 cut(s)	2519
Eco91I	GGTNACC	2 cut(s)	2870, 3017
EcoNI	CCTNNNNNAGG	2 cut(s)	2387, 3051
EcoO109I	RGGNCCY	3 cut(s)	45, 338, 2729
EcoO65I	GGTNACC	2 cut(s)	2870, 3017
EcoRII	CCWGG	2 cut(s)	2712, 3185
EcoRV	GATATC	2 cut(s)	400, 781
EcoT14I	CCWWGG	5 cut(s)	63, 108, 247, 258, 334
EcoT22I	ATGCAT	2 cut(s)	2709, 2839
ErhI	CCWWGG	5 cut(s)	63, 108, 247, 258, 334
Esp3I	CGTCTC	3 cut(s)	152, 2617, 3613
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FaqI	GGGAC	3 cut(s)	31, 1889, 2440
FauI	CCCGC	3 cut(s)	231, 843, 1126
FbaI	TGATCA	2 cut(s)	1063, 3178
FokI	GGATG	9 cut(s)	711, 735, 1103, 2469, 2478, 2824, 2963, 3208, 3506
FspBI	CTAG	4 cut(s)	761, 1431, 2592, 2864
FspI	TGCGCA	1 cut(s)	1991
GsuI	CTGGAG	2 cut(s)	134, 2679
HaeII	RGCGCY	2 cut(s)	370, 3559
HaeIII	GGCC	4 cut(s)	68, 216, 339, 959
HapII	CCGG	4 cut(s)	49, 915, 2045, 3586
HgaI	GACGC	1 cut(s)	134
HincII	GTYRAC	2 cut(s)	2323, 3247
HindII	GTYRAC	2 cut(s)	2323, 3247
HindIII	AAGCTT	2 cut(s)	1973, 2201
HpaI	GTTAAC	1 cut(s)	3247
HpaII	CCGG	4 cut(s)	49, 915, 2045, 3586
Hpy166II	GTNNAC	7 cut(s)	2323, 2691, 2919, 3041, 3069, 3120, 3247
Hpy8I	GTNNAC	7 cut(s)	2323, 2691, 2919, 3041, 3069, 3120, 3247
Hpy99I	CGWCG	3 cut(s)	167, 2794, 3576
HpyCH4III	ACNGT	8 cut(s)	133, 629, 908, 993, 1826, 1897, 2968, 3205
HpyCH4IV	ACGT	6 cut(s)	672, 679, 1695, 2626, 2792, 3622
HpyF10VI	GCNNNNNNNGC	9 cut(s)	213, 428, 437, 598, 1322, 2200, 2213, 2569, 2680
HpySE526I	ACGT	6 cut(s)	672, 679, 1695, 2626, 2792, 3622
Ksp22I	TGATCA	2 cut(s)	1063, 3178
KspAI	GTTAAC	1 cut(s)	3247
LguI	GCTCTTC	3 cut(s)	2178, 2214, 3388
LmnI	GCTCC	3 cut(s)	131, 1192, 3409
Lsp1109I	GCAGC	7 cut(s)	187, 376, 601, 960, 2011, 2325, 2986
MaeI	CTAG	4 cut(s)	761, 1431, 2592, 2864
MaeII	ACGT	6 cut(s)	672, 679, 1695, 2626, 2792, 3622
MaeIII	GTNAC	9 cut(s)	857, 1490, 1844, 2002, 2084, 2594, 2627, 2870, 3017
MbiI	CCGCTC	2 cut(s)	25, 2188
MfeI	CAATTG	1 cut(s)	3270
MflI	RGATCY	4 cut(s)	1021, 2095, 2926, 3461
MhlI	GDGCHC	4 cut(s)	102, 392, 1402, 2396
MlyI	GAGTC	5 cut(s)	1598, 1661, 1730, 1919, 3115
MmeI	TCCRAC	4 cut(s)	1170, 1572, 2421, 2485
Mph1103I	ATGCAT	2 cut(s)	2709, 2839
MroXI	GAANNNNTTC	2 cut(s)	1272, 2478
MslI	CAYNNNNRTG	2 cut(s)	753, 1128
MspA1I	CMGCKG	1 cut(s)	956
MspCI	CTTAAG	1 cut(s)	2684
MspI	CCGG	4 cut(s)	49, 915, 2045, 3586
MspR9I	CCNGG	5 cut(s)	49, 2045, 2714, 3187, 3587
MunI	CAATTG	1 cut(s)	3270
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	2 cut(s)	2714, 3187
MvnI	CGCG	3 cut(s)	159, 3114, 3116
MwoI	GCNNNNNNNGC	9 cut(s)	213, 428, 437, 598, 1322, 2200, 2213, 2569, 2680
NciI	CCSGG	3 cut(s)	49, 2045, 3587
NcoI	CCATGG	1 cut(s)	247
NlaIV	GGNNCC	8 cut(s)	47, 61, 340, 1236, 2262, 2395, 2730, 3411
NmuCI	GTSAC	5 cut(s)	1490, 1844, 2002, 2084, 2594
NsbI	TGCGCA	1 cut(s)	1991
NsiI	ATGCAT	2 cut(s)	2709, 2839
NspI	RCATGY	4 cut(s)	1508, 2545, 2683, 2707
NspV	TTCGAA	3 cut(s)	471, 1276, 2962
PaeI	GCATGC	1 cut(s)	2683
PagI	TCATGA	3 cut(s)	661, 1516, 2449
PaqCI	CACCTGC	3 cut(s)	881, 2977, 3532
PauI	GCGCGC	1 cut(s)	3112
PciI	ACATGT	1 cut(s)	1504
PciSI	GCTCTTC	3 cut(s)	2178, 2214, 3388
PctI	GAATGC	1 cut(s)	113
PdmI	GAANNNNTTC	2 cut(s)	1272, 2478
PfeI	GAWTC	7 cut(s)	880, 1373, 1427, 1436, 1580, 3254, 3307
PleI	GAGTC	5 cut(s)	1597, 1660, 1729, 1919, 3115
PpsI	GAGTC	5 cut(s)	1597, 1660, 1729, 1919, 3115
PpuMI	RGGWCCY	2 cut(s)	45, 2729
PscI	ACATGT	1 cut(s)	1504
PsiI	TTATAA	1 cut(s)	2906
Psp5II	RGGWCCY	2 cut(s)	45, 2729
Psp6I	CCWGG	2 cut(s)	2712, 3185
PspEI	GGTNACC	2 cut(s)	2870, 3017
PspGI	CCWGG	2 cut(s)	2712, 3185
PspN4I	GGNNCC	8 cut(s)	47, 61, 340, 1236, 2262, 2395, 2730, 3411
PspPI	GGNCC	4 cut(s)	45, 251, 338, 2729
PspPPI	RGGWCCY	2 cut(s)	45, 2729
PsuI	RGATCY	4 cut(s)	1021, 2095, 2926, 3461
PteI	GCGCGC	1 cut(s)	3112
RsaI	GTAC	4 cut(s)	671, 2690, 3070, 3522
RsaNI	GTAC	4 cut(s)	670, 2689, 3069, 3521
RseI	CAYNNNNRTG	2 cut(s)	753, 1128
SapI	GCTCTTC	3 cut(s)	2178, 2214, 3388
Sau96I	GGNCC	4 cut(s)	45, 251, 338, 2729
SchI	GAGTC	5 cut(s)	1598, 1661, 1730, 1919, 3115
ScrFI	CCNGG	5 cut(s)	49, 2045, 2714, 3187, 3587
SduI	GDGCHC	4 cut(s)	102, 392, 1402, 2396
SfcI	CTRYAG	1 cut(s)	3204
SfuI	TTCGAA	3 cut(s)	471, 1276, 2962
SinI	GGWCC	3 cut(s)	45, 251, 2729
SmiI	ATTTAAAT	1 cut(s)	3340
SmiMI	CAYNNNNRTG	2 cut(s)	753, 1128
SmlI	CTYRAG	4 cut(s)	596, 1744, 2684, 2822
SmoI	CTYRAG	4 cut(s)	596, 1744, 2684, 2822
SpeI	ACTAGT	2 cut(s)	2591, 2863
SphI	GCATGC	1 cut(s)	2683
SspI	AATATT	3 cut(s)	1172, 2477, 3232
SspMI	CTAG	4 cut(s)	761, 1431, 2592, 2864
StyD4I	CCNGG	5 cut(s)	47, 2043, 2712, 3185, 3585
StyI	CCWWGG	5 cut(s)	63, 108, 247, 258, 334
SwaI	ATTTAAAT	1 cut(s)	3340
TaaI	ACNGT	8 cut(s)	133, 629, 908, 993, 1826, 1897, 2968, 3205
TaiI	ACGT	6 cut(s)	675, 682, 1698, 2629, 2795, 3625
TaqI	TCGA	9 cut(s)	165, 219, 453, 471, 1276, 1468, 2299, 2941, 2962
TatI	WGTACW	3 cut(s)	2688, 3068, 3520
TauI	GCSGC	4 cut(s)	372, 422, 959, 2563
TfiI	GAWTC	7 cut(s)	880, 1373, 1427, 1436, 1580, 3254, 3307
TscAI	CASTG	9 cut(s)	136, 328, 334, 913, 1050, 2011, 2539, 2977, 3306
TseFI	GTSAC	5 cut(s)	1490, 1844, 2002, 2084, 2594
TseI	GCWGC	7 cut(s)	175, 364, 589, 973, 2024, 2313, 2999
Tsp45I	GTSAC	5 cut(s)	1490, 1844, 2002, 2084, 2594
TspGWI	ACGGA	4 cut(s)	927, 1750, 1863, 2448
TspRI	CASTG	9 cut(s)	136, 328, 334, 913, 1050, 2011, 2539, 2977, 3306
Vha464I	CTTAAG	1 cut(s)	2684
VpaK11BI	GGWCC	3 cut(s)	45, 251, 2729
XagI	CCTNNNNNAGG	2 cut(s)	2387, 3051
XapI	RAATTY	4 cut(s)	684, 1054, 1934, 2770
XceI	RCATGY	4 cut(s)	1508, 2545, 2683, 2707
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2752
XmnI	GAANNNNTTC	2 cut(s)	1272, 2478
XspI	CTAG	4 cut(s)	761, 1431, 2592, 2864
Zsp2I	ATGCAT	2 cut(s)	2709, 2839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.