Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

17595032 .. 17615214

Gene Structure 20183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1154000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3624 bp

ATGGCGATAGACAGCGGAACCAAGGAGCAGCCGCACAAGGAGCACAGGTCCCGGCAGTCGGGCGCCAAGGCCGACAAGAAGAAGAAGCCGGACGCCTCCCAAAACGGCAAGAAGCCAAACCCAAAGGCTTTCGCTTGCCAATCAGCCGGGAAAGCCAAGCGTCTTCAGTCTCGCACCGTCGAGAAGCAGCAGCGCAGCCTTCACGTCCCCACCATCGACCGTTCGTATGGCGAGCCGGCTCCGTATGTCGTTCTAGTTCATGGACCCCCGAAGGTTGGGAAGTCTTTGTTGATTAAGTCGCTTGTGAAGCATTATACTAAGCATAATTTACCGGATGTTCGAGGCCCGATTACCATTGTTTCAGGGAAGCAAAGGCGGGTACAGTTCGTGGAGTGCCCTAATGATATCAATGGTATGATTGATGCCGCAAAGTTTGCTGATTTGGCACTACTACTTATAGACGGAAGCTACGGTTTTGAAATGGAAACATTTGAATTCCTGAATATATTACAAGTTCATGGTTTCCCAAAGGTTATGGGAGTTCTTACACACCTCGACAAGTTTAAAGATGTTAAGAAATTAAGGAAAACAAAGCAGCACCTCAAACATCGTTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCTGGTCTCATTCATGGAAAGTATGTCAAGCGTGAAGTTCACAACCTGGCGCGTTTCATATCCGTTATGAAGTTTCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTTTGGTAGATCGTTTTGAAGATGTCACTCCACCTGAAAAAGTGCGTTTGAATAATAAATGCGATAGAAATGTCACATTGTATGGGTATTTGCGGGGATGTAACATGAGAAAAGGAACAAAGATTCATATTGCAGGTGTTGGGGATCACAGTTTAGCTGGCATGACAGTATTAGCTGATCCTTGTCCTTTACCCTCAGCTGCCAAAAAGAAGGGACTGCGTGATAAGGAAAAACTGTTTTATGCACCTATGTCTGGACTTGGGGATCTCCTGTATGATAAAGATGCTGTCTATATAAACATAAATGACCACTTTGTCCAGTTTTCAAACCTTGATGAAAAAGGCGAAGCAACAAAACAAGGAAACCCCCAAGATGTGGGTGTGGCTTTGGTAAAATCTCTTCAGAACACAAAATATTCGGTTGATGAAAAGTTAGAGGAGAGCTTCATTAATCTATTTAGCCGGAAGCCCAATTTATTATTGAGTGCTCATAGTGATGGAATAGATATTGATGAATCACGAGAACAGAATCATATGATAGAGCCTGTAGAGGAATATCAGTCTGGGGAAGCTGTCAAAGGTGATGGTTCTGCTGAAGAAAGCGATGCGGAGGATTCTGAGGGTTCAGAATCAGAATCTTTATATAAGAATGAAGCAGCTCCTAAAGATGCATCAGATCAAGATGCTACTCTTAAAGATCACTTGAAGGAACATGTTGAGATTCATGATGGAAGGTCAAGGCGAAAAGTTATCTTTAGAAATGACCTTGATCATTACAATATGGAGGATTCAGCTGAAGAGGCTGACGAAGAAGGTGAAGATGGTGATGACGACGATGATGACAACAGTAATGATGTTGATAATCAGGGATCTTCTGGTTCAGATTCATCAGCAGAAGATGGAGATGTTCGTGAAACAGATGATGAAACAGGGAACATTGCAAAGTGGAAAGAATCTTTGGTAGAAAGGGCTTCTTCAAGGCAAACTATTAATCTTATGCAACTTGTATATGGGAAATCAACATCAATGCCAACAACTTGTAGCAATGAAGATCACGATAGCAGTAGTGCAGATGATGACTTTTTTGTGCCAAAAGGAGAAGGAAACAAGAAACATAGAGGAATAGACAGTGGAAACTGGGATGTTGAGGACTGTTCCAAATTCACAAATTATCTCAAAGACTGGAAAGAGGAAAATGTTAGAGAGGATATTCGTGATCGTTTTGTCACTGGTGATTGGTCGAAAGCTTCTCAAAGAAATCAACCCACAGAAGCTAAAGTTGAAGATGATGATGATCTTTATGGTGACTTTGAAGATTTAGAAACAGGTGAGAAGCATGGCGGTAATAATTCAGATGACACAGGTGCAGACCACAAGGAAGATTCGGCCAAAGAGGAGAGAAGGCTGAAAAAGCTAGCTCTTCGTGCAAAGTTTGATGCTCAATATCCTTTTCACTTGAAATATCTTCTTAATGCATCTGAAGAGGAGCTTGATAATAAACCTGAAGGCAAGTTCGGTCGAGACCGACCCAAAGAAAGTGACTACTTTGACAAGTTGAAGGATGAGATTGAACTTCAGAAGCAAATGAATATTGCTGAACTCAATGAACTGGATGAGGCCACCCAATTAGAAGTAGAGGGTTTTCGGACAGGGACATACCTACGGTTGGAGGTTCATGATGTCCCTTATGAGATGGTTGAATATTTTGATCCCTGTCATCCTATTTTGGTTGGAGGAATTGGTCTTGGTGAAGAAAATGTCGGACACATGCAGGTCAGGTTAAAGCGTCATAGGTGGCACAAGAAAGTACTTAAGAATAACGATCCCCTTATTGTTTCTATTGGGTGGAGGAGATACCAAACAATACCAGTTTATGCTATTGAGGATCGCAATGGAAGGCATCGCATGCTTAAGTACACTCCTGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCCAATACTGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGCACAATTTAGGATCACAGCAACTGCAGTTGTGCTTGAGTTCAACCATGCATCACGAATAGTGAAGAAACTCAAACTAGTTGGTCACCCCTGCAAGATTTTCAAGAACACTGCCCTTGTAAAGGATATGTTCACCTCGGATCTTGAAATAGCTCGATTTGAAGGTGCTGCTGTTCGAACTGTCAGTGGAATCCGGGGGCAGGTCAAAAAGGCTGCGAAAGAAGAAATTGGTAACCAACCAAAAAAGATGGGTGGACAACCAAAAGAAGGGATTGCTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTTTTTTTGCGTGCTTGGACTCAAGTTGAAGTTCCTAGATTTTACAACCCATTGACGACGTCCCTGCAACCTCGTGACAAGACCTGGCAAGGGATGAAAACTACTACTGAATTGAGGAGAGAACATAATATTCCTATTCCTGTCAATAAGGATTCACTTTACAAGAAAATTGAAAGGAAGTTGAAGAAGTTCAATCCGTTGGTGATTCCTAAGTCACTGCAAGCTGTGCTGCCATTTGGAACAAAGCCAAAGGATATTCCCAGTAGGAAAAGGCCACTCCTTGAAAATAGAAGAGCTGTTGTCATGGAGCCTCACGAACGTAAAGTTCATACTCTTGTTCAACATCTTGGATTAATACAAAACGAGAAGATGAAGAAGCGCAAGCTAAAAGATGATAAAAAGAGGAAAGAAATTGAAGTCCAGAAAGCCAAAGAAGAACAAGTGTCTAAAAAGCGCCAGAGGGAAGAACGACGGGAGAGATACCGGGCACAAGATAAAATGAAGAAGAAAACTAGGAGAAGCGCAGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1208

Amino Acids

137.84

Weight (kDa)

8.13

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	242 - 315	5.9e-25	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	713 - 1040	3.2e-86	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	887
AasI	GACNNNNNNGTC	1 cut(s)	1076
AatII	GACGTC	1 cut(s)	3152
Acc36I	ACCTGC	3 cut(s)	887, 2524, 2965
AccB1I	GGYRCC	1 cut(s)	62
AccB7I	CCANNNNNTGG	1 cut(s)	1138
AccII	CGCG	1 cut(s)	706
AciI	CCGC	7 cut(s)	15, 32, 376, 426, 856, 1370, 2103
AclWI	GGATC	9 cut(s)	915, 935, 1035, 1639, 2465, 2579, 2655, 2795, 2922
AcoI	YGGCCR	1 cut(s)	2148
AcsI	RAATTY	3 cut(s)	494, 1922, 2758
AcuI	CTGAAG	7 cut(s)	149, 1148, 1377, 1578, 2262, 2286, 2321
AcyI	GRCGYC	3 cut(s)	63, 93, 3149
AfaI	GTAC	3 cut(s)	381, 2571, 2678
AflII	CTTAAG	2 cut(s)	2573, 2672
AflIII	ACRYGT	1 cut(s)	1474
AhlI	ACTAGT	1 cut(s)	2851
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	699, 3173
AjuI	GAANNNNNNNTTGG	2 cut(s)	1703, 1735
AloI	GAACNNNNNNTCC	2 cut(s)	739, 771
Alw21I	GWGCWC	3 cut(s)	45, 1252, 3059
Alw26I	GTCTC	3 cut(s)	174, 665, 2277
Alw44I	GTGCAC	1 cut(s)	3055
AlwI	GGATC	9 cut(s)	915, 935, 1035, 1639, 2465, 2579, 2655, 2795, 2922
AlwNI	CAGNNNCTG	1 cut(s)	2798
AoxI	GGCC	6 cut(s)	69, 343, 2148, 2379, 2716, 3362
ApaI	GGGCCC	1 cut(s)	2720
ApaLI	GTGCAC	1 cut(s)	3055
ApoI	RAATTY	3 cut(s)	494, 1922, 2758
AseI	ATTAAT	3 cut(s)	1212, 1752, 3443
Asp700I	GAANNNNTTC	1 cut(s)	3278
AspLEI	GCGC	6 cut(s)	65, 195, 706, 3471, 3546, 3614
AspS9I	GGNCC	5 cut(s)	48, 263, 344, 2716, 2717
AsuC2I	CCSGG	4 cut(s)	52, 148, 2969, 3575
AsuII	TTCGAA	1 cut(s)	2950
AsuNHI	GCTAGC	1 cut(s)	2176
AvaII	GGWCC	2 cut(s)	48, 263
BaeGI	GKGCMC	4 cut(s)	398, 2720, 3059, 3580
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	2720
BarI	GAAGNNNNNNTAC	2 cut(s)	1146, 1178
BauI	CACGAG	2 cut(s)	1281, 3162
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	3 cut(s)	45, 1252, 3059
BbvCI	CCTCAGC	1 cut(s)	958
BccI	CCATC	9 cut(s)	221, 626, 1253, 1340, 1484, 1577, 1655, 2449, 3016
BceAI	ACGGC	1 cut(s)	121
BcgI	CGANNNNNNTGC	2 cut(s)	3136, 3170
BciT130I	CCWGG	2 cut(s)	701, 3175
BclI	TGATCA	1 cut(s)	1531
BcnI	CCSGG	4 cut(s)	52, 148, 2969, 3575
BcoDI	GTCTC	3 cut(s)	174, 665, 2277
BcuI	ACTAGT	1 cut(s)	2851
BfaI	CTAG	6 cut(s)	254, 2177, 2852, 3051, 3126, 3603
BfmI	CTRYAG	2 cut(s)	1308, 2799
BfoI	RGCGCY	2 cut(s)	66, 3547
BfrI	CTTAAG	2 cut(s)	2573, 2672
BfuAI	ACCTGC	3 cut(s)	887, 2524, 2965
BmcAI	AGTACT	1 cut(s)	2571
Bme1390I	CCNGG	6 cut(s)	52, 148, 701, 2969, 3175, 3575
Bme18I	GGWCC	2 cut(s)	48, 263
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	5 cut(s)	48, 263, 344, 2716, 2717
BmiI	GGNNCC	8 cut(s)	19, 50, 64, 240, 265, 2717, 2718, 3399
BmrFI	CCNGG	6 cut(s)	52, 148, 701, 2969, 3175, 3575
BmrI	ACTGGG	2 cut(s)	1909, 3345
BmtI	GCTAGC	1 cut(s)	2180
BmuI	ACTGGG	2 cut(s)	1909, 3345
BpiI	GAAGAC	1 cut(s)	155
BplI	GAGNNNNNCTC	2 cut(s)	736, 768
Bpu10I	CCTNAGC	1 cut(s)	958
Bpu14I	TTCGAA	1 cut(s)	2950
BpuEI	CTTGAG	2 cut(s)	2831, 3096
BpuMI	CCSGG	4 cut(s)	52, 148, 2969, 3575
BsaBI	GATNNNNATC	1 cut(s)	2055
BsaHI	GRCGYC	3 cut(s)	63, 93, 3149
BsaI	GGTCTC	2 cut(s)	665, 2277
BsaJI	CCNNGG	4 cut(s)	21, 66, 2910, 2968
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	8 cut(s)	1081, 1904, 1949, 1996, 2376, 2630, 2743, 3351
Bse3DI	GCAATG	5 cut(s)	1698, 1813, 2659, 2695, 2712
Bse8I	GATNNNNATC	1 cut(s)	2055
BseBI	CCWGG	2 cut(s)	701, 3175
BseDI	CCNNGG	4 cut(s)	21, 66, 2910, 2968
BseGI	GGATG	9 cut(s)	340, 730, 754, 866, 1909, 2329, 2380, 2479, 3189
BseJI	GATNNNNATC	1 cut(s)	2055
BseMI	GCAATG	5 cut(s)	1698, 1813, 2659, 2695, 2712
BseMII	CTCAG	2 cut(s)	972, 1371
BseNI	ACTGG	8 cut(s)	1081, 1904, 1949, 1996, 2376, 2630, 2743, 3351
BseRI	GAGGAG	5 cut(s)	1214, 2171, 2261, 2626, 3220
BseSI	GKGCMC	4 cut(s)	398, 2720, 3059, 3580
BsgI	GTGCAG	2 cut(s)	1851, 2148
Bsh1236I	CGCG	1 cut(s)	706
Bsh1285I	CGRYCG	2 cut(s)	220, 2281
BshFI	GGCC	6 cut(s)	71, 345, 2150, 2381, 2718, 3364
BshNI	GGYRCC	1 cut(s)	62
BsiEI	CGRYCG	2 cut(s)	220, 2281
BsiHKAI	GWGCWC	3 cut(s)	45, 1252, 3059
BsiSI	CCGG	8 cut(s)	52, 89, 147, 236, 332, 1225, 2968, 3574
BslFI	GGGAC	6 cut(s)	34, 191, 990, 2428, 2429, 3136
BsmAI	GTCTC	3 cut(s)	174, 665, 2277
BsmFI	GGGAC	6 cut(s)	34, 191, 990, 2428, 2429, 3136
BsnI	GGCC	6 cut(s)	71, 345, 2150, 2381, 2718, 3364
Bso31I	GGTCTC	2 cut(s)	665, 2277
Bsp119I	TTCGAA	1 cut(s)	2950
Bsp120I	GGGCCC	1 cut(s)	2716
Bsp1286I	GDGCHC	6 cut(s)	45, 398, 1252, 2720, 3059, 3580
BspACI	CCGC	7 cut(s)	15, 32, 376, 426, 856, 1370, 2103
BspANI	GGCC	6 cut(s)	71, 345, 2150, 2381, 2718, 3364
BspCNI	CTCAG	2 cut(s)	971, 1372
BspFNI	CGCG	1 cut(s)	706
BspHI	TCATGA	2 cut(s)	1486, 2437
BspLI	GGNNCC	8 cut(s)	19, 50, 64, 240, 265, 2717, 2718, 3399
BspMAI	CTGCAG	1 cut(s)	2803
BspMI	ACCTGC	3 cut(s)	887, 2524, 2965
BspOI	GCTAGC	1 cut(s)	2180
BspPI	GGATC	9 cut(s)	915, 935, 1035, 1639, 2465, 2579, 2655, 2795, 2922
BspQI	GCTCTTC	2 cut(s)	2187, 3376
BspT104I	TTCGAA	1 cut(s)	2950
BspT107I	GGYRCC	1 cut(s)	62
BspTI	CTTAAG	2 cut(s)	2573, 2672
BspTNI	GGTCTC	2 cut(s)	665, 2277
BsrDI	GCAATG	5 cut(s)	1698, 1813, 2659, 2695, 2712
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	8 cut(s)	1081, 1904, 1949, 1996, 2376, 2630, 2743, 3351
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	4 cut(s)	21, 66, 2910, 2968
BssNI	GRCGYC	3 cut(s)	63, 93, 3149
BssSI	CACGAG	2 cut(s)	1281, 3162
BssT1I	CCWWGG	2 cut(s)	21, 66
Bst2BI	CACGAG	2 cut(s)	1281, 3162
Bst2UI	CCWGG	2 cut(s)	701, 3175
Bst6I	CTCTTC	5 cut(s)	1167, 1554, 2187, 2238, 3376
BstACI	GRCGYC	3 cut(s)	63, 93, 3149
BstAFI	CTTAAG	2 cut(s)	2573, 2672
BstAPI	GCANNNNNTGC	3 cut(s)	434, 2668, 3316
BstBI	TTCGAA	1 cut(s)	2950
BstC8I	GCNNGC	9 cut(s)	136, 233, 237, 922, 2178, 2669, 3102, 3312, 3473
BstDEI	CTNAG	4 cut(s)	318, 958, 1380, 3300
BstEII	GGTNACC	2 cut(s)	2858, 3005
BstENI	CCTNNNNNAGG	1 cut(s)	2894
BstF5I	GGATG	9 cut(s)	340, 730, 754, 866, 1909, 2329, 2380, 2479, 3189
BstFNI	CGCG	1 cut(s)	706
BstH2I	RGCGCY	2 cut(s)	66, 3547
BstHHI	GCGC	6 cut(s)	65, 195, 706, 3471, 3546, 3614
BstMAI	GTCTC	3 cut(s)	174, 665, 2277
BstMCI	CGRYCG	2 cut(s)	220, 2281
BstNI	CCWGG	2 cut(s)	701, 3175
BstNSI	RCATGY	4 cut(s)	1478, 2533, 2671, 2695
BstPI	GGTNACC	2 cut(s)	2858, 3005
BstSCI	CCNGG	6 cut(s)	50, 146, 699, 2967, 3173, 3573
BstSFI	CTRYAG	2 cut(s)	1308, 2799
BstSLI	GKGCMC	4 cut(s)	398, 2720, 3059, 3580
BstUI	CGCG	1 cut(s)	706
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	3 cut(s)	1027, 1631, 2914
BstYI	RGATCY	3 cut(s)	1027, 1631, 2914
BsuRI	GGCC	6 cut(s)	71, 345, 2150, 2381, 2718, 3364
BtgZI	GCGATG	2 cut(s)	1380, 2648
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	9 cut(s)	340, 730, 754, 866, 1909, 2329, 2380, 2479, 3189
BtsI	GCAGTG	2 cut(s)	2883, 3305
BtsIMutI	CAGTG	5 cut(s)	1897, 1989, 2883, 2965, 3305
BveI	ACCTGC	3 cut(s)	887, 2524, 2965
Cac8I	GCNNGC	9 cut(s)	136, 233, 237, 922, 2178, 2669, 3102, 3312, 3473
CaiI	CAGNNNCTG	1 cut(s)	2798
CciI	TCATGA	2 cut(s)	1486, 2437
CfoI	GCGC	6 cut(s)	65, 195, 706, 3471, 3546, 3614
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	5 cut(s)	48, 263, 344, 2716, 2717
CseI	GACGC	3 cut(s)	101, 149, 2537
Csp6I	GTAC	3 cut(s)	380, 2570, 2677
CviQI	GTAC	3 cut(s)	380, 2570, 2677
DdeI	CTNAG	4 cut(s)	318, 958, 1380, 3300
DinI	GGCGCC	1 cut(s)	64
DraI	TTTAAA	1 cut(s)	565
DrdI	GACNNNNNNGTC	1 cut(s)	1076
DseDI	GACNNNNNNGTC	1 cut(s)	1076
EaeI	YGGCCR	1 cut(s)	2148
Eam1104I	CTCTTC	5 cut(s)	1167, 1554, 2187, 2238, 3376
EarI	CTCTTC	5 cut(s)	1167, 1554, 2187, 2238, 3376
Eco130I	CCWWGG	2 cut(s)	21, 66
Eco24I	GRGCYC	1 cut(s)	2720
Eco31I	GGTCTC	2 cut(s)	665, 2277
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	48, 263
Eco57I	CTGAAG	7 cut(s)	149, 1148, 1377, 1578, 2262, 2286, 2321
Eco91I	GGTNACC	2 cut(s)	2858, 3005
EcoNI	CCTNNNNNAGG	1 cut(s)	2894
EcoO109I	RGGNCCY	3 cut(s)	48, 2716, 2717
EcoO65I	GGTNACC	2 cut(s)	2858, 3005
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	2 cut(s)	699, 3173
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	2 cut(s)	21, 66
EcoT22I	ATGCAT	4 cut(s)	1435, 2239, 2697, 2827
EcoT38I	GRGCYC	1 cut(s)	2720
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
ErhI	CCWWGG	2 cut(s)	21, 66
FalI	AAGNNNNNCTT	4 cut(s)	1720, 1752, 2235, 2267
FaqI	GGGAC	6 cut(s)	34, 191, 990, 2428, 2429, 3136
FauI	CCCGC	2 cut(s)	369, 849
FauNDI	CATATG	1 cut(s)	1296
FbaI	TGATCA	1 cut(s)	1531
FokI	GGATG	9 cut(s)	347, 717, 741, 873, 1916, 2336, 2387, 2466, 3196
FriOI	GRGCYC	1 cut(s)	2720
FspBI	CTAG	6 cut(s)	254, 2177, 2852, 3051, 3126, 3603
GlaI	GCGC	6 cut(s)	64, 194, 705, 3470, 3545, 3613
HaeII	RGCGCY	2 cut(s)	66, 3547
HaeIII	GGCC	6 cut(s)	71, 345, 2150, 2381, 2718, 3364
HapII	CCGG	8 cut(s)	52, 89, 147, 236, 332, 1225, 2968, 3574
HgaI	GACGC	3 cut(s)	101, 149, 2537
HhaI	GCGC	6 cut(s)	65, 195, 706, 3471, 3546, 3614
Hin1I	GRCGYC	3 cut(s)	63, 93, 3149
Hin6I	GCGC	6 cut(s)	63, 193, 704, 3469, 3544, 3612
HinP1I	GCGC	6 cut(s)	63, 193, 704, 3469, 3544, 3612
HindIII	AAGCTT	1 cut(s)	2007
HpaII	CCGG	8 cut(s)	52, 89, 147, 236, 332, 1225, 2968, 3574
Hpy166II	GTNNAC	5 cut(s)	694, 2679, 2907, 3029, 3057
Hpy8I	GTNNAC	5 cut(s)	694, 2679, 2907, 3029, 3057
Hpy99I	CGWCG	4 cut(s)	182, 1598, 3151, 3564
HpyCH4IV	ACGT	3 cut(s)	204, 3149, 3409
HpyF3I	CTNAG	4 cut(s)	318, 958, 1380, 3300
HpySE526I	ACGT	3 cut(s)	204, 3149, 3409
Hsp92I	GRCGYC	3 cut(s)	63, 93, 3149
HspAI	GCGC	6 cut(s)	63, 193, 704, 3469, 3544, 3612
KasI	GGCGCC	1 cut(s)	62
KroI	GCCGGC	1 cut(s)	235
KroNI	GCCGGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	1531
LguI	GCTCTTC	2 cut(s)	2187, 3376
LmnI	GCTCC	7 cut(s)	25, 40, 244, 635, 1426, 2248, 3397
MaeI	CTAG	6 cut(s)	254, 2177, 2852, 3051, 3126, 3603
MaeII	ACGT	3 cut(s)	204, 3149, 3409
MflI	RGATCY	3 cut(s)	1027, 1631, 2914
MhlI	GDGCHC	6 cut(s)	45, 398, 1252, 2720, 3059, 3580
Mly113I	GGCGCC	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	3103
MmeI	TCCRAC	3 cut(s)	2409, 2473, 2503
Mph1103I	ATGCAT	4 cut(s)	1435, 2239, 2697, 2827
MroNI	GCCGGC	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	3278
MslI	CAYNNNNRTG	2 cut(s)	759, 1257
MspA1I	CMGCKG	3 cut(s)	15, 962, 1556
MspCI	CTTAAG	2 cut(s)	2573, 2672
MspI	CCGG	8 cut(s)	52, 89, 147, 236, 332, 1225, 2968, 3574
MspR9I	CCNGG	6 cut(s)	52, 148, 701, 2969, 3175, 3575
MvaI	CCWGG	2 cut(s)	701, 3175
MvnI	CGCG	1 cut(s)	706
NaeI	GCCGGC	1 cut(s)	237
NarI	GGCGCC	1 cut(s)	63
NciI	CCSGG	4 cut(s)	52, 148, 2969, 3575
NdeI	CATATG	1 cut(s)	1296
NgoMIV	GCCGGC	1 cut(s)	235
NheI	GCTAGC	1 cut(s)	2176
NlaIV	GGNNCC	8 cut(s)	19, 50, 64, 240, 265, 2717, 2718, 3399
NmuCI	GTSAC	9 cut(s)	787, 835, 1987, 2066, 2300, 2858, 3083, 3164, 3303
NsiI	ATGCAT	4 cut(s)	1435, 2239, 2697, 2827
NspI	RCATGY	4 cut(s)	1478, 2533, 2671, 2695
NspV	TTCGAA	1 cut(s)	2950
PaeI	GCATGC	1 cut(s)	2671
PagI	TCATGA	2 cut(s)	1486, 2437
PaqCI	CACCTGC	1 cut(s)	887
PciI	ACATGT	1 cut(s)	1474
PciSI	GCTCTTC	2 cut(s)	2187, 3376
PdiI	GCCGGC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	3278
PflFI	GACNNNGTC	1 cut(s)	3148
PflMI	CCANNNNNTGG	1 cut(s)	1138
PleI	GAGTC	1 cut(s)	3103
PluTI	GGCGCC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	3103
PpuMI	RGGWCCY	1 cut(s)	48
PscI	ACATGT	1 cut(s)	1474
PshBI	ATTAAT	3 cut(s)	1212, 1752, 3443
Psp5II	RGGWCCY	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	699, 3173
PspEI	GGTNACC	2 cut(s)	2858, 3005
PspGI	CCWGG	2 cut(s)	699, 3173
PspN4I	GGNNCC	8 cut(s)	19, 50, 64, 240, 265, 2717, 2718, 3399
PspOMI	GGGCCC	1 cut(s)	2716
PspPI	GGNCC	5 cut(s)	48, 263, 344, 2716, 2717
PspPPI	RGGWCCY	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	2803
PstNI	CAGNNNCTG	1 cut(s)	2798
PsuI	RGATCY	3 cut(s)	1027, 1631, 2914
PsyI	GACNNNGTC	1 cut(s)	3148
PvuII	CAGCTG	2 cut(s)	962, 1556
RsaI	GTAC	3 cut(s)	381, 2571, 2678
RsaNI	GTAC	3 cut(s)	380, 2570, 2677
RseI	CAYNNNNRTG	2 cut(s)	759, 1257
SapI	GCTCTTC	2 cut(s)	2187, 3376
Sau96I	GGNCC	5 cut(s)	48, 263, 344, 2716, 2717
ScaI	AGTACT	1 cut(s)	2571
SchI	GAGTC	1 cut(s)	3103
ScrFI	CCNGG	6 cut(s)	52, 148, 701, 2969, 3175, 3575
SduI	GDGCHC	6 cut(s)	45, 398, 1252, 2720, 3059, 3580
SfcI	CTRYAG	2 cut(s)	1308, 2799
SfoI	GGCGCC	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	2950
SinI	GGWCC	2 cut(s)	48, 263
SmiMI	CAYNNNNRTG	2 cut(s)	759, 1257
SmlI	CTYRAG	4 cut(s)	2573, 2672, 2810, 3111
SmoI	CTYRAG	4 cut(s)	2573, 2672, 2810, 3111
SpeI	ACTAGT	1 cut(s)	2851
SphI	GCATGC	1 cut(s)	2671
SsiI	CCGC	7 cut(s)	15, 32, 376, 426, 856, 1370, 2103
SspDI	GGCGCC	1 cut(s)	62
SspI	AATATT	4 cut(s)	1178, 2353, 2465, 3220
SspMI	CTAG	6 cut(s)	254, 2177, 2852, 3051, 3126, 3603
StyD4I	CCNGG	6 cut(s)	50, 146, 699, 2967, 3173, 3573
StyI	CCWWGG	2 cut(s)	21, 66
TaiI	ACGT	3 cut(s)	207, 3152, 3412
TaqI	TCGA	8 cut(s)	180, 216, 340, 555, 2003, 2281, 2929, 2950
TaqII	GACCGA	2 cut(s)	2267, 2301
TatI	WGTACW	2 cut(s)	2569, 2676
TauI	GCSGC	2 cut(s)	34, 428
TscAI	CASTG	5 cut(s)	1897, 1996, 2890, 2965, 3312
TseFI	GTSAC	9 cut(s)	787, 835, 1987, 2066, 2300, 2858, 3083, 3164, 3303
Tsp45I	GTSAC	9 cut(s)	787, 835, 1987, 2066, 2300, 2858, 3083, 3164, 3303
TspGWI	ACGGA	4 cut(s)	231, 477, 706, 3276
TspRI	CASTG	5 cut(s)	1897, 1996, 2890, 2965, 3312
Tth111I	GACNNNGTC	1 cut(s)	3148
Van91I	CCANNNNNTGG	1 cut(s)	1138
Vha464I	CTTAAG	2 cut(s)	2573, 2672
VneI	GTGCAC	1 cut(s)	3055
VpaK11BI	GGWCC	2 cut(s)	48, 263
VspI	ATTAAT	3 cut(s)	1212, 1752, 3443
XagI	CCTNNNNNAGG	1 cut(s)	2894
XapI	RAATTY	3 cut(s)	494, 1922, 2758
XceI	RCATGY	4 cut(s)	1478, 2533, 2671, 2695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2740
XmnI	GAANNNNTTC	1 cut(s)	3278
XspI	CTAG	6 cut(s)	254, 2177, 2852, 3051, 3126, 3603
ZraI	GACGTC	1 cut(s)	3150
ZrmI	AGTACT	1 cut(s)	2571
Zsp2I	ATGCAT	4 cut(s)	1435, 2239, 2697, 2827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.