Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030223.1

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1406

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030223.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atgatagatagtggaagtatggagcagtcacacaaggcacacaggtcccggcagtcgggttccaaggccgataagaagaagccccaaaaagagtcgaagaagcaaaaccccaaccccaaggcgttcgctttcagctcaactgtcaaagcaaagcgtctccagtctcgtgccgtcgagaaagagcagcgacggcttcatgttccgaccattgatcgctcctacggcgaacagcctccttttgttgttctcgttcatggacctcccaaggttggcaagtctttgttgatcaagtcccttgtaaagcattataccaaacatgatttacgggaggttaaaggcccgattaccatagtaacagggaagcagaggcgggttcagtttgtggagtgccccaatgatatcaatggcatgattgatgccgcaaaatttgctgatttagcattgcttcttatagacggaagctatggttttgaaatggaaacatttgagttccttaatatattgcaagtccatggcttcccaaaggtcatgggagttctcactcaccttgataagttcaaagatgcaaagaaactgaggaaaacaaagcagcatttaaaacatcggttctggactgaaatatatgatggagctaaattgttttatttatcaggtcttattcatgaaaagtatgtcaaacgtgagattcacaatctggctcgtttcatatctgttatgaagttccatcctttatcttggagaactgctcatccttatgttctagtagatcgttttgaagatgtcactccccctgaaaaagtgcgcttgaataataaatgtgatagaaatgtcacactttatggttatttgcgcgggtgtaacatgaaaaaaggaacaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

293

Amino Acids

33.83

Weight (kDa)

10.0

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	852
AciI	CCGC	3 cut(s)	370, 420, 852
AcsI	RAATTY	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	55, 269
AgsI	TTSAA	4 cut(s)	473, 559, 776, 808
AloI	GAACNNNNNNTCC	2 cut(s)	733, 765
AluBI	AGCT	3 cut(s)	135, 462, 632
AluI	AGCT	3 cut(s)	135, 462, 632
Alw26I	GTCTC	2 cut(s)	161, 168
AoxI	GGCC	2 cut(s)	66, 337
ApeKI	GCWGC	2 cut(s)	184, 589
ApoI	RAATTY	1 cut(s)	425
AspLEI	GCGC	2 cut(s)	804, 852
AspS9I	GGNCC	3 cut(s)	45, 257, 338
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	536
AvaII	GGWCC	2 cut(s)	45, 257
BaeGI	GKGCMC	1 cut(s)	392
BauI	CACGAG	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	196, 601
BccI	CCATC	2 cut(s)	620, 732
BceAI	ACGGC	3 cut(s)	155, 206, 238
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	161, 168
BfaI	CTAG	1 cut(s)	761
BisI	GCNGC	3 cut(s)	185, 420, 590
BlsI	GCNGC	3 cut(s)	186, 421, 591
Bme1390I	CCNGG	1 cut(s)	49
Bme18I	GGWCC	2 cut(s)	45, 257
BmgT120I	GGNCC	3 cut(s)	45, 257, 338
BmiI	GGNNCC	2 cut(s)	47, 61
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	406, 553
BplI	GAGNNNNNCTC	2 cut(s)	730, 762
BpmI	CTGGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	49
BsaJI	CCNNGG	4 cut(s)	63, 117, 264, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 269
Bse1I	ACTGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	440
BseDI	CCNNGG	4 cut(s)	63, 117, 264, 511
BseGI	GGATG	2 cut(s)	724, 748
BseLI	CCNNNNNNNGG	2 cut(s)	55, 269
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	196, 601
Bsh1236I	CGCG	1 cut(s)	852
BshFI	GGCC	2 cut(s)	68, 339
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	2 cut(s)	31, 277
BslI	CCNNNNNNNGG	2 cut(s)	55, 269
BsmAI	GTCTC	2 cut(s)	161, 168
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	31, 277
BsnI	GGCC	2 cut(s)	68, 339
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	3 cut(s)	211, 285, 766
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	3 cut(s)	370, 420, 852
BspANI	GGCC	2 cut(s)	68, 339
BspCNI	CTCAG	1 cut(s)	567
BspFNI	CGCG	1 cut(s)	852
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	2 cut(s)	47, 61
BsrDI	GCAATG	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	4 cut(s)	63, 117, 264, 511
BssMI	GATC	3 cut(s)	211, 285, 766
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	4 cut(s)	63, 117, 264, 511
Bst2BI	CACGAG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	575
BstDSI	CCRYGG	1 cut(s)	511
BstF5I	GGATG	2 cut(s)	724, 748
BstFNI	CGCG	1 cut(s)	852
BstHHI	GCGC	2 cut(s)	804, 852
BstKTI	GATC	3 cut(s)	214, 288, 769
BstMAI	GTCTC	2 cut(s)	161, 168
BstMBI	GATC	3 cut(s)	211, 285, 766
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 222, 428, 437
BstSCI	CCNGG	1 cut(s)	47
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	852
BstV1I	GCAGC	2 cut(s)	196, 601
BsuRI	GGCC	2 cut(s)	68, 339
BtgI	CCRYGG	1 cut(s)	511
BtsCI	GGATG	2 cut(s)	724, 748
CciI	TCATGA	1 cut(s)	661
CfoI	GCGC	2 cut(s)	804, 852
Cfr13I	GGNCC	3 cut(s)	45, 257, 338
CseI	GACGC	1 cut(s)	143
CviAII	CATG	8 cut(s)	197, 254, 317, 409, 512, 529, 662, 862
DdeI	CTNAG	1 cut(s)	575
DpnI	GATC	3 cut(s)	213, 287, 768
DpnII	GATC	3 cut(s)	211, 285, 766
DraI	TTTAAA	1 cut(s)	597
Eco130I	CCWWGG	4 cut(s)	63, 117, 264, 511
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	2 cut(s)	45, 257
EcoO109I	RGGNCCY	1 cut(s)	45
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	4 cut(s)	63, 117, 264, 511
ErhI	CCWWGG	4 cut(s)	63, 117, 264, 511
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	8 cut(s)	200, 257, 320, 412, 515, 532, 665, 865
FaqI	GGGAC	2 cut(s)	31, 277
FatI	CATG	8 cut(s)	196, 253, 316, 408, 511, 528, 661, 861
FauI	CCCGC	2 cut(s)	363, 845
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	185, 420, 590
FokI	GGATG	2 cut(s)	711, 735
Fsp4HI	GCNGC	3 cut(s)	185, 420, 590
FspBI	CTAG	1 cut(s)	761
GlaI	GCGC	2 cut(s)	803, 851
GluI	GCNGC	3 cut(s)	185, 420, 590
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	68, 339
HapII	CCGG	1 cut(s)	49
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	2 cut(s)	804, 852
Hin1II	CATG	8 cut(s)	200, 257, 320, 412, 515, 532, 665, 865
Hin6I	GCGC	2 cut(s)	802, 850
HinP1I	GCGC	2 cut(s)	802, 850
HinfI	GANTC	2 cut(s)	92, 685
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	536
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	3 cut(s)	175, 610, 662
Hpy99I	CGWCG	2 cut(s)	176, 192
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	679
HpyCH4V	TGCA	2 cut(s)	505, 566
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 222, 428, 437
HpyF3I	CTNAG	1 cut(s)	575
HpySE526I	ACGT	1 cut(s)	679
Hsp92II	CATG	8 cut(s)	200, 257, 320, 412, 515, 532, 665, 865
HspAI	GCGC	2 cut(s)	802, 850
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	211, 285, 766
LmnI	GCTCC	3 cut(s)	22, 221, 629
LpnPI	CCDG	8 cut(s)	28, 62, 173, 342, 595, 636, 680, 804
Lsp1109I	GCAGC	2 cut(s)	196, 601
LweI	GCATC	2 cut(s)	406, 553
MaeI	CTAG	1 cut(s)	761
MaeII	ACGT	1 cut(s)	679
MaeIII	GTNAC	5 cut(s)	27, 352, 781, 829, 857
MalI	GATC	3 cut(s)	213, 287, 768
MboI	GATC	3 cut(s)	211, 285, 766
MboII	GAAGA	3 cut(s)	88, 109, 788
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	2 cut(s)	425, 635
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	5 cut(s)	243, 270, 322, 360, 570
MseI	TTAA	3 cut(s)	333, 495, 596
MslI	CAYNNNNRTG	1 cut(s)	753
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	852
MwoI	GCNNNNNNNGC	4 cut(s)	190, 222, 428, 437
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	511
NdeII	GATC	3 cut(s)	211, 285, 766
NlaIII	CATG	8 cut(s)	200, 257, 320, 412, 515, 532, 665, 865
NlaIV	GGNNCC	2 cut(s)	47, 61
NmuCI	GTSAC	3 cut(s)	27, 781, 829
PagI	TCATGA	1 cut(s)	661
PfeI	GAWTC	1 cut(s)	685
PkrI	GCNGC	3 cut(s)	186, 421, 591
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	47, 61
PspPI	GGNCC	3 cut(s)	45, 257, 338
PspPPI	RGGWCCY	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	753
SaqAI	TTAA	3 cut(s)	333, 495, 596
SatI	GCNGC	3 cut(s)	185, 420, 590
Sau3AI	GATC	3 cut(s)	211, 285, 766
Sau96I	GGNCC	3 cut(s)	45, 257, 338
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	392
SfaNI	GCATC	2 cut(s)	406, 553
SinI	GGWCC	2 cut(s)	45, 257
SmiMI	CAYNNNNRTG	1 cut(s)	753
Sse9I	AATT	2 cut(s)	425, 635
SsiI	CCGC	3 cut(s)	370, 420, 852
SspMI	CTAG	1 cut(s)	761
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	4 cut(s)	63, 117, 264, 511
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	682
TaqI	TCGA	2 cut(s)	95, 174
TasI	AATT	2 cut(s)	425, 635
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	1 cut(s)	685
Tru1I	TTAA	3 cut(s)	333, 495, 596
Tru9I	TTAA	3 cut(s)	333, 495, 596
TseFI	GTSAC	3 cut(s)	27, 781, 829
TseI	GCWGC	2 cut(s)	184, 589
Tsp45I	GTSAC	3 cut(s)	27, 781, 829
TspDTI	ATGAA	7 cut(s)	185, 242, 650, 678, 694, 731, 878
TspGWI	ACGGA	1 cut(s)	471
VpaK11BI	GGWCC	2 cut(s)	45, 257
XapI	RAATTY	1 cut(s)	425
XspI	CTAG	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.