Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

26725072 .. 26725768

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG252100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAAAACCACAGCTGAGCTGAGGAGAGAACACAATCTTCCTATTCCTGTTAATAAAGATTCACTTTACAAGCCAATTGAAAGGAAGCGGAGGAAGTTCAACCCATTGGTGATCTCTAAGTCATTGCAAACAGCTCTCCCATTTGTTTCAAAGTTTAAGAACACACCCAGGAGAAGAAGGCCACCTATTGAAAATAGAAGAACTGTTGTCATGGAGCCTCGTGAACGAAGAGTTCATACTAGTGTTCAACAGCTTGGTTTGATTAGTAGTGACAAGAGAAAGAAGCGCAGGGCTAAGGATGACAAGAAAAGAAGAGAGATTGACAGACGGAGGAAGAAAATTAGGAGAAATGCAGAGGACGGAATTGCACTCATTGATATGATACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

129

Amino Acids

15.51

Weight (kDa)

11.65

Isoelectric Point (pI)

99.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	88
AgsI	TTSAA	5 cut(s)	80, 100, 150, 191, 248
AhlI	ACTAGT	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	4 cut(s)	14, 19, 134, 253
AluI	AGCT	4 cut(s)	14, 19, 134, 253
AoxI	GGCC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	121
BarI	GAAGNNNNNNTAC	2 cut(s)	220, 252
BauI	CACGAG	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	169
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	1 cut(s)	240
BlpI	GCTNAGC	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	169
Bpu10I	CCTNAGC	2 cut(s)	20, 294
Bpu1102I	GCTNAGC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	2 cut(s)	6, 11
BseRI	GAGGAG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	111
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	2 cut(s)	7, 12
BspLI	GGNNCC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	2 cut(s)	223, 307
BstDEI	CTNAG	4 cut(s)	15, 20, 117, 294
BstF5I	GGATG	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	304
CfoI	GCGC	1 cut(s)	288
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	8 cut(s)	14, 19, 73, 134, 181, 217, 253, 293
CviKI_1	RGCY	8 cut(s)	14, 19, 73, 134, 181, 217, 253, 293
DdeI	CTNAG	4 cut(s)	15, 20, 117, 294
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	223, 307
EarI	CTCTTC	2 cut(s)	223, 307
EcoRII	CCWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	214
FaiI	YATR	4 cut(s)	212, 237, 380, 388
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	1 cut(s)	210
FokI	GGATG	1 cut(s)	311
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	127, 353, 368
HpyF3I	CTNAG	4 cut(s)	15, 20, 117, 294
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	4 cut(s)	60, 154, 181, 274
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	6 cut(s)	29, 186, 210, 240, 324, 346
MfeI	CAATTG	1 cut(s)	75
MluCI	AATT	3 cut(s)	75, 339, 363
MnlI	CCTC	5 cut(s)	15, 84, 228, 324, 349
MseI	TTAA	2 cut(s)	51, 156
MslI	CAYNNNNRTG	2 cut(s)	240, 377
MspA1I	CMGCKG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	169
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	14
RseI	CAYNNNNRTG	2 cut(s)	240, 377
SaqAI	TTAA	2 cut(s)	51, 156
Sau3AI	GATC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	5 cut(s)	16, 21, 136, 187, 255
SmiMI	CAYNNNNRTG	2 cut(s)	240, 377
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	3 cut(s)	75, 339, 363
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	205
TasI	AATT	3 cut(s)	75, 339, 363
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	51, 156
Tru9I	TTAA	2 cut(s)	51, 156
TseFI	GTSAC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	17, 224
TspGWI	ACGGA	2 cut(s)	343, 375
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.