Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

29034438 .. 29046722

Gene Structure 12285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG145400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2787 bp

ATGGAGCAGTCACACAAGGCACACAGGTCCCGGCAGTCGGGTTCCAAGGCCGATAAGAAGAAGCCCCAAAAAGAGTCGAAGAAGCAAAACCCGAAGGCGTTCGCTTTCAGCTCAACTGTCAAAGCAAAGCGTCTCCAGTCTCGTGCCGTCGAGAAAGAGCAGCGACGACTTCATGTTCCGACCATTGATCGCTCCTACGGCGAACAGCCTCCTTTTGTTGTTCTTGTCCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGGAGGTTAAAGGCCCGATTACCATAGTAACAGGGAAGCAGAGGCGGGTTCAGTTTGTGGAGTGCCCCAATGATATCAATGGCATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTTCTTATAGACGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCAAAGATGCAAAGAAGCTGAGGAAAACAAAGCAGCATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATGTCACTCCCCCTGAAAAAGTGCGCTTGAATAATAAATGTGATAGAAATGTCACACTTTATGGTTATTTGCGGGGGTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTACAGTGTTGCTGGTATGACAGGCTTAGCTGATCCCTGTCCTTTACCCTCTGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCGATGTCTGGACTTGGGGATCTCCTGTATGACAAAGATGCTGTCTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAAGATGAAAAGGAGGAAGCAACAAACAAAGGAGAGCTTGAGGATGTGGGTGTGACCATGGTTAAAAGTCTTCAAAACCCAAAATATTCGCTTGATGAAAAGTTAGAGCAGAGCTTCATTAACTTTTATATCCCGAAACCTAAATTGGAATCTCAACATGATGAAAAAGATCTTGATGAATCCAGAAGACGCATTCGTATGATAGAGCCTTTAGAGGAACATCAGTTTGGGGAAACAATGAAAGCTGGGGGTTCTGGTCAAGAGAGTAATGTTGAGGATATTGATGGCTCAGAATCAAAATCTTATCAGAATGATGCTGCTCGTAATGTTGCACTAACAAAAAGTGATTCAAGTGGATCTGATAGAGAAAATGGTGATGTATCAGATCAAGATGTAAACCTTAAAGATCACTTGAAGGAACATGTTGAGTTTCATGATGGAAGGTCAAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGAGGAGTCAGAAGATGATAACGACGGTGGCGATAATGATGCAGATAATCATACCTCTTCTGGTTCAGAGTCTTCAGAGGAGGATAGAGAAATCCATGAGACAGATGATGATGTGGGAAACATAGCAAAGTGGAAAGAGTCTTTGGCAGAACGGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCAGTTTCAACTAAAGCCAATGAAGAACAAGACAGTAGTGATGAGGAAAGTGACGGAGATGACTTTTTTAAGCCAAAAGGAGACGGAATTAAGAAACATAGAGTAGAAGCAGAAAATTGGAATGTTGAGGACTCTTCCAAATTTACAAATCATTCAATCAAAGACTGGAATGATAAAAAGCTTATAGAGAGTGTGCGTGATCGCTTTGTCACTGGTGATTGGTCAAAGGCTGCTAAAAGAAATCAAGACACAGAGGCCACATTTGAAGATGGGGATGCTGTCTTTGGTGACTTTGAAGATTTAGAAACGGGTGAGAAGCATGATGGATATCATACAAATGAGACTAGAAAAGTTGCAAACAACAAGAAAGCTGGCTTAGATGAAGAGGAGCGGAGGCTCAAAAAGCTTGCTCTTCGTGCCAAGTTTGATGCTCAATATGATGAACCTGATACAAGTGAGGAGGAACCTGATGATACACATGTAAGCCAGTTTGGACGAGATCGAGCTAAAGAAAGCGGCTATGTTGACAAGCTGAAGGAGGAGATTGAACTCCGGAAACAAATGAATATAGCTGAACTCAATGACCTTGATGAGGGCACCCGATTAGAGGTTGAGGGTTTCCGGACAGGGACTTACCTTCGGTTGGAAGTTCATGATGTTCCTTATGAGATGTTTGAATATTTTGATCCCTGCCATCCTGTTTTGGTTGGAGGAATTGGTCTTGGGGAAGAAAGCACTGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTGCTAAAGACCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCTGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTACACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCCAATACCGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGTTTGGCCAGTTTTGTATTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

928

Amino Acids

106.21

Weight (kDa)

5.83

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	232 - 305	2.2e-26	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	717 - 919	1.6e-41	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	857
Acc36I	ACCTGC	1 cut(s)	857
AccB1I	GGYRCC	1 cut(s)	2366
AccBSI	CCGCTC	1 cut(s)	2161
AccIII	TCCGGA	2 cut(s)	2322, 2391
AciI	CCGC	6 cut(s)	346, 396, 826, 2161, 2286, 2533
AclWI	GGATC	4 cut(s)	905, 1005, 1426, 2450
AcoI	YGGCCR	1 cut(s)	2765
AcsI	RAATTY	3 cut(s)	401, 1910, 2743
AcuI	CTGAAG	3 cut(s)	1623, 1755, 2324
AfaI	GTAC	1 cut(s)	2663
AfiI	CCNNNNNNNGG	7 cut(s)	37, 245, 986, 2362, 2377, 2413, 2723
AflII	CTTAAG	1 cut(s)	2657
AflIII	ACRYGT	2 cut(s)	1483, 2248
AgeI	ACCGGT	1 cut(s)	2723
AjnI	CCWGG	1 cut(s)	2522
AjuI	GAANNNNNNNTTGG	6 cut(s)	1190, 1222, 1272, 1304, 1691, 1723
AloI	GAACNNNNNNTCC	2 cut(s)	709, 741
Alw26I	GTCTC	6 cut(s)	137, 144, 1658, 1723, 1845, 2105
AlwI	GGATC	4 cut(s)	905, 1005, 1426, 2450
Aor13HI	TCCGGA	2 cut(s)	2322, 2391
AoxI	GGCC	6 cut(s)	48, 313, 2025, 2520, 2701, 2765
ApaI	GGGCCC	1 cut(s)	2705
ApeKI	GCWGC	6 cut(s)	160, 565, 932, 949, 1379, 2000
ApoI	RAATTY	3 cut(s)	401, 1910, 2743
ArsI	GACNNNNNNTTYG	2 cut(s)	1005, 1037
AsiGI	ACCGGT	1 cut(s)	2723
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	780
AspS9I	GGNCC	5 cut(s)	27, 233, 314, 2701, 2702
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	6 cut(s)	512, 887, 1448, 1997, 2069, 2093
AvaII	GGWCC	2 cut(s)	27, 233
BaeGI	GKGCMC	3 cut(s)	368, 2369, 2705
BaeI	ACNNNNGTAYC	2 cut(s)	2235, 2268
BalI	TGGCCA	1 cut(s)	2767
BanI	GGYRCC	1 cut(s)	2366
BanII	GRGCYC	1 cut(s)	2705
BauI	CACGAG	1 cut(s)	141
BbsI	GAAGAC	3 cut(s)	1124, 1255, 1629
BbvCI	CCTCAGC	1 cut(s)	551
BbvI	GCAGC	6 cut(s)	172, 577, 919, 936, 1366, 1987
BccI	CCATC	9 cut(s)	596, 708, 1340, 1493, 2033, 2087, 2472, 2535, 2582
BceAI	ACGGC	2 cut(s)	131, 214
BcgI	CGANNNNNNTGC	2 cut(s)	1586, 1620
BciT130I	CCWGG	1 cut(s)	2524
BciVI	GTATCC	1 cut(s)	2504
BclI	TGATCA	2 cut(s)	261, 1039
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	6 cut(s)	137, 144, 1658, 1723, 1845, 2105
BfaI	CTAG	2 cut(s)	737, 2115
BfrI	CTTAAG	1 cut(s)	2657
BfuAI	ACCTGC	1 cut(s)	857
BfuI	GTATCC	1 cut(s)	2504
BglII	AGATCT	1 cut(s)	1231
BisI	GCNGC	9 cut(s)	161, 396, 566, 933, 950, 1380, 2001, 2287, 2534
BlpI	GCTNAGC	1 cut(s)	904
BlsI	GCNGC	9 cut(s)	162, 397, 567, 934, 951, 1381, 2002, 2288, 2535
Bme1390I	CCNGG	2 cut(s)	31, 2524
Bme18I	GGWCC	2 cut(s)	27, 233
BmgT120I	GGNCC	5 cut(s)	27, 233, 314, 2701, 2702
BmiI	GGNNCC	6 cut(s)	29, 43, 2235, 2368, 2702, 2703
BmrFI	CCNGG	2 cut(s)	31, 2524
BmsI	GCATC	8 cut(s)	382, 529, 1006, 1366, 1594, 2035, 2188, 2656
BpiI	GAAGAC	3 cut(s)	1124, 1255, 1629
BplI	GAGNNNNNCTC	2 cut(s)	706, 738
BpmI	CTGGAG	2 cut(s)	119, 2652
Bpu10I	CCTNAGC	1 cut(s)	551
Bpu1102I	GCTNAGC	1 cut(s)	904
BpuEI	CTTGAG	1 cut(s)	1121
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	2097
BsaJI	CCNNGG	5 cut(s)	45, 229, 240, 487, 1119
BsaWI	WCCGGW	3 cut(s)	2322, 2391, 2723
Bsc4I	CCNNNNNNNGG	7 cut(s)	37, 245, 986, 2362, 2377, 2413, 2723
Bse118I	RCCGGY	1 cut(s)	2723
Bse1I	ACTGG	7 cut(s)	136, 1940, 1987, 2257, 2512, 2565, 2768
Bse3DI	GCAATG	4 cut(s)	416, 2644, 2680, 2697
Bse8I	GATNNNNATC	1 cut(s)	2097
BseAI	TCCGGA	2 cut(s)	2322, 2391
BseBI	CCWGG	1 cut(s)	2524
BseDI	CCNNGG	5 cut(s)	45, 229, 240, 487, 1119
BseGI	GGATG	5 cut(s)	700, 724, 1111, 2050, 2464
BseJI	GATNNNNATC	1 cut(s)	2097
BseLI	CCNNNNNNNGG	7 cut(s)	37, 245, 986, 2362, 2377, 2413, 2723
BseMI	GCAATG	4 cut(s)	416, 2644, 2680, 2697
BseMII	CTCAG	2 cut(s)	542, 1365
BseNI	ACTGG	7 cut(s)	136, 1940, 1987, 2257, 2512, 2565, 2768
BseRI	GAGGAG	5 cut(s)	1583, 1658, 2171, 2243, 2324
BseSI	GKGCMC	3 cut(s)	368, 2369, 2705
BseXI	GCAGC	6 cut(s)	172, 577, 919, 936, 1366, 1987
BseYI	CCCAGC	1 cut(s)	1307
BshFI	GGCC	6 cut(s)	50, 315, 2027, 2522, 2703, 2767
BshNI	GGYRCC	1 cut(s)	2366
BshTI	ACCGGT	1 cut(s)	2723
BsiSI	CCGG	4 cut(s)	31, 2323, 2392, 2724
BslFI	GGGAC	3 cut(s)	13, 253, 2413
BslI	CCNNNNNNNGG	7 cut(s)	37, 245, 986, 2362, 2377, 2413, 2723
BsmAI	GTCTC	6 cut(s)	137, 144, 1658, 1723, 1845, 2105
BsmBI	CGTCTC	2 cut(s)	137, 1845
BsmFI	GGGAC	3 cut(s)	13, 253, 2413
BsmI	GAATGC	1 cut(s)	1254
BsnI	GGCC	6 cut(s)	50, 315, 2027, 2522, 2703, 2767
Bsp120I	GGGCCC	1 cut(s)	2701
Bsp1286I	GDGCHC	3 cut(s)	368, 2369, 2705
Bsp13I	TCCGGA	2 cut(s)	2322, 2391
Bsp1720I	GCTNAGC	1 cut(s)	904
Bsp19I	CCATGG	3 cut(s)	229, 487, 1119
BspACI	CCGC	6 cut(s)	346, 396, 826, 2161, 2286, 2533
BspANI	GGCC	6 cut(s)	50, 315, 2027, 2522, 2703, 2767
BspCNI	CTCAG	2 cut(s)	543, 1364
BspEI	TCCGGA	2 cut(s)	2322, 2391
BspHI	TCATGA	3 cut(s)	637, 1495, 2422
BspLI	GGNNCC	6 cut(s)	29, 43, 2235, 2368, 2702, 2703
BspMI	ACCTGC	1 cut(s)	857
BspPI	GGATC	4 cut(s)	905, 1005, 1426, 2450
BspQI	GCTCTTC	1 cut(s)	2187
BspT107I	GGYRCC	1 cut(s)	2366
BspTI	CTTAAG	1 cut(s)	2657
BsrBI	CCGCTC	1 cut(s)	2161
BsrDI	GCAATG	4 cut(s)	416, 2644, 2680, 2697
BsrFI	RCCGGY	1 cut(s)	2723
BsrI	ACTGG	7 cut(s)	136, 1940, 1987, 2257, 2512, 2565, 2768
BssAI	RCCGGY	1 cut(s)	2723
BssECI	CCNNGG	5 cut(s)	45, 229, 240, 487, 1119
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	5 cut(s)	45, 229, 240, 487, 1119
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	2524
Bst4CI	ACNGT	4 cut(s)	118, 884, 1592, 1805
Bst6I	CTCTTC	5 cut(s)	1560, 1627, 1909, 2148, 2187
BstAFI	CTTAAG	1 cut(s)	2657
BstAPI	GCANNNNNTGC	2 cut(s)	404, 2653
BstC8I	GCNNGC	4 cut(s)	2143, 2178, 2520, 2654
BstDEI	CTNAG	4 cut(s)	551, 904, 1351, 2146
BstDSI	CCRYGG	3 cut(s)	229, 487, 1119
BstENI	CCTNNNNNAGG	1 cut(s)	2360
BstF5I	GGATG	5 cut(s)	700, 724, 1111, 2050, 2464
BstHHI	GCGC	1 cut(s)	780
BstMAI	GTCTC	6 cut(s)	137, 144, 1658, 1723, 1845, 2105
BstMWI	GCNNNNNNNGC	7 cut(s)	198, 404, 413, 2173, 2186, 2542, 2653
BstNI	CCWGG	1 cut(s)	2524
BstNSI	RCATGY	5 cut(s)	1487, 2252, 2518, 2656, 2680
BstSCI	CCNGG	2 cut(s)	29, 2522
BstSLI	GKGCMC	3 cut(s)	368, 2369, 2705
BstV1I	GCAGC	6 cut(s)	172, 577, 919, 936, 1366, 1987
BstV2I	GAAGAC	3 cut(s)	1124, 1255, 1629
BstX2I	RGATCY	3 cut(s)	997, 1231, 1418
BstYI	RGATCY	3 cut(s)	997, 1231, 1418
BsuI	GTATCC	1 cut(s)	2504
BsuRI	GGCC	6 cut(s)	50, 315, 2027, 2522, 2703, 2767
BtgI	CCRYGG	3 cut(s)	229, 487, 1119
BtgZI	GCGATG	1 cut(s)	2633
BtsCI	GGATG	5 cut(s)	700, 724, 1111, 2050, 2464
BtsIMutI	CAGTG	4 cut(s)	889, 1980, 2505, 2572
BveI	ACCTGC	1 cut(s)	857
Cac8I	GCNNGC	4 cut(s)	2143, 2178, 2520, 2654
CciI	TCATGA	3 cut(s)	637, 1495, 2422
CfoI	GCGC	1 cut(s)	780
Cfr10I	RCCGGY	1 cut(s)	2723
Cfr13I	GGNCC	5 cut(s)	27, 233, 314, 2701, 2702
CseI	GACGC	2 cut(s)	119, 1260
Csp6I	GTAC	1 cut(s)	2662
CspAI	ACCGGT	1 cut(s)	2723
CviQI	GTAC	1 cut(s)	2662
DdeI	CTNAG	4 cut(s)	551, 904, 1351, 2146
DraI	TTTAAA	1 cut(s)	573
EaeI	YGGCCR	1 cut(s)	2765
Eam1104I	CTCTTC	5 cut(s)	1560, 1627, 1909, 2148, 2187
EarI	CTCTTC	5 cut(s)	1560, 1627, 1909, 2148, 2187
Eco130I	CCWWGG	5 cut(s)	45, 229, 240, 487, 1119
Eco24I	GRGCYC	1 cut(s)	2705
Eco32I	GATATC	2 cut(s)	376, 2099
Eco47I	GGWCC	2 cut(s)	27, 233
Eco57I	CTGAAG	3 cut(s)	1623, 1755, 2324
EcoNI	CCTNNNNNAGG	1 cut(s)	2360
EcoO109I	RGGNCCY	3 cut(s)	27, 2701, 2702
EcoRII	CCWGG	1 cut(s)	2522
EcoRV	GATATC	2 cut(s)	376, 2099
EcoT14I	CCWWGG	5 cut(s)	45, 229, 240, 487, 1119
EcoT22I	ATGCAT	1 cut(s)	2682
EcoT38I	GRGCYC	1 cut(s)	2705
ErhI	CCWWGG	5 cut(s)	45, 229, 240, 487, 1119
Esp3I	CGTCTC	2 cut(s)	137, 1845
FalI	AAGNNNNNCTT	2 cut(s)	1083, 1115
FaqI	GGGAC	3 cut(s)	13, 253, 2413
FauI	CCCGC	2 cut(s)	339, 819
FbaI	TGATCA	2 cut(s)	261, 1039
Fnu4HI	GCNGC	9 cut(s)	161, 396, 566, 933, 950, 1380, 2001, 2287, 2534
FokI	GGATG	5 cut(s)	687, 711, 1118, 2057, 2451
FriOI	GRGCYC	1 cut(s)	2705
Fsp4HI	GCNGC	9 cut(s)	161, 396, 566, 933, 950, 1380, 2001, 2287, 2534
FspBI	CTAG	2 cut(s)	737, 2115
GlaI	GCGC	1 cut(s)	779
GluI	GCNGC	9 cut(s)	161, 396, 566, 933, 950, 1380, 2001, 2287, 2534
GsaI	CCCAGC	1 cut(s)	1311
GsuI	CTGGAG	2 cut(s)	119, 2652
HaeIII	GGCC	6 cut(s)	50, 315, 2027, 2522, 2703, 2767
HapII	CCGG	4 cut(s)	31, 2323, 2392, 2724
HgaI	GACGC	2 cut(s)	119, 1260
HhaI	GCGC	1 cut(s)	780
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HincII	GTYRAC	1 cut(s)	2296
HindII	GTYRAC	1 cut(s)	2296
HindIII	AAGCTT	2 cut(s)	1949, 2174
HpaII	CCGG	4 cut(s)	31, 2323, 2392, 2724
HphI	GGTGA	6 cut(s)	512, 887, 1448, 1997, 2069, 2093
Hpy166II	GTNNAC	3 cut(s)	1459, 2296, 2664
Hpy188I	TCNGA	9 cut(s)	180, 1354, 1371, 1423, 1447, 1564, 1576, 1633, 1642
Hpy8I	GTNNAC	3 cut(s)	1459, 2296, 2664
Hpy99I	CGWCG	3 cut(s)	152, 168, 1592
HpyAV	CCTTC	7 cut(s)	88, 937, 1471, 1497, 2299, 2417, 2637
HpyCH4III	ACNGT	4 cut(s)	118, 884, 1592, 1805
HpyCH4IV	ACGT	1 cut(s)	655
HpyF10VI	GCNNNNNNNGC	7 cut(s)	198, 404, 413, 2173, 2186, 2542, 2653
HpyF3I	CTNAG	4 cut(s)	551, 904, 1351, 2146
HpySE526I	ACGT	1 cut(s)	655
HspAI	GCGC	1 cut(s)	778
Kpn2I	TCCGGA	2 cut(s)	2322, 2391
Ksp22I	TGATCA	2 cut(s)	261, 1039
LguI	GCTCTTC	1 cut(s)	2187
LmnI	GCTCC	4 cut(s)	4, 197, 605, 2158
Lsp1109I	GCAGC	6 cut(s)	172, 577, 919, 936, 1366, 1987
LweI	GCATC	8 cut(s)	382, 529, 1006, 1366, 1594, 2035, 2188, 2656
MaeI	CTAG	2 cut(s)	737, 2115
MaeII	ACGT	1 cut(s)	655
MbiI	CCGCTC	1 cut(s)	2161
MflI	RGATCY	3 cut(s)	997, 1231, 1418
MhlI	GDGCHC	3 cut(s)	368, 2369, 2705
MlsI	TGGCCA	1 cut(s)	2767
MluNI	TGGCCA	1 cut(s)	2767
MlyI	GAGTC	5 cut(s)	83, 1580, 1643, 1712, 1895
MmeI	TCCRAC	3 cut(s)	203, 2394, 2458
Mox20I	TGGCCA	1 cut(s)	2767
Mph1103I	ATGCAT	1 cut(s)	2682
MroI	TCCGGA	2 cut(s)	2322, 2391
MroXI	GAANNNNTTC	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	2767
MslI	CAYNNNNRTG	3 cut(s)	729, 1259, 2106
Msp20I	TGGCCA	1 cut(s)	2767
MspCI	CTTAAG	1 cut(s)	2657
MspI	CCGG	4 cut(s)	31, 2323, 2392, 2724
MspR9I	CCNGG	2 cut(s)	31, 2524
Mva1269I	GAATGC	1 cut(s)	1254
MvaI	CCWGG	1 cut(s)	2524
MwoI	GCNNNNNNNGC	7 cut(s)	198, 404, 413, 2173, 2186, 2542, 2653
NciI	CCSGG	1 cut(s)	31
NcoI	CCATGG	3 cut(s)	229, 487, 1119
NlaIV	GGNNCC	6 cut(s)	29, 43, 2235, 2368, 2702, 2703
NmuCI	GTSAC	8 cut(s)	9, 757, 805, 1114, 1820, 1978, 2057, 2567
NsiI	ATGCAT	1 cut(s)	2682
NspI	RCATGY	5 cut(s)	1487, 2252, 2518, 2656, 2680
PaeI	GCATGC	1 cut(s)	2656
PagI	TCATGA	3 cut(s)	637, 1495, 2422
PaqCI	CACCTGC	1 cut(s)	857
PciI	ACATGT	2 cut(s)	1483, 2248
PciSI	GCTCTTC	1 cut(s)	2187
PcsI	WCGNNNNNNNCGW	1 cut(s)	1593
PctI	GAATGC	1 cut(s)	1254
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	7 cut(s)	661, 856, 1211, 1241, 1355, 1409, 1559
PinAI	ACCGGT	1 cut(s)	2723
PkrI	GCNGC	9 cut(s)	162, 397, 567, 934, 951, 1381, 2002, 2288, 2535
PleI	GAGTC	5 cut(s)	82, 1579, 1642, 1711, 1895
PpsI	GAGTC	5 cut(s)	82, 1579, 1642, 1711, 1895
PpuMI	RGGWCCY	1 cut(s)	27
PscI	ACATGT	2 cut(s)	1483, 2248
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	2522
PspFI	CCCAGC	1 cut(s)	1307
PspGI	CCWGG	1 cut(s)	2522
PspN4I	GGNNCC	6 cut(s)	29, 43, 2235, 2368, 2702, 2703
PspOMI	GGGCCC	1 cut(s)	2701
PspPI	GGNCC	5 cut(s)	27, 233, 314, 2701, 2702
PspPPI	RGGWCCY	1 cut(s)	27
PsuI	RGATCY	3 cut(s)	997, 1231, 1418
RsaI	GTAC	1 cut(s)	2663
RsaNI	GTAC	1 cut(s)	2662
RseI	CAYNNNNRTG	3 cut(s)	729, 1259, 2106
SapI	GCTCTTC	1 cut(s)	2187
SatI	GCNGC	9 cut(s)	161, 396, 566, 933, 950, 1380, 2001, 2287, 2534
Sau96I	GGNCC	5 cut(s)	27, 233, 314, 2701, 2702
SchI	GAGTC	5 cut(s)	83, 1580, 1643, 1712, 1895
ScrFI	CCNGG	2 cut(s)	31, 2524
SduI	GDGCHC	3 cut(s)	368, 2369, 2705
SfaNI	GCATC	8 cut(s)	382, 529, 1006, 1366, 1594, 2035, 2188, 2656
SinI	GGWCC	2 cut(s)	27, 233
SmiMI	CAYNNNNRTG	3 cut(s)	729, 1259, 2106
SmlI	CTYRAG	2 cut(s)	1100, 2657
SmoI	CTYRAG	2 cut(s)	1100, 2657
SphI	GCATGC	1 cut(s)	2656
SsiI	CCGC	6 cut(s)	346, 396, 826, 2161, 2286, 2533
SspI	AATATT	2 cut(s)	1148, 2450
SspMI	CTAG	2 cut(s)	737, 2115
StyD4I	CCNGG	2 cut(s)	29, 2522
StyI	CCWWGG	5 cut(s)	45, 229, 240, 487, 1119
TaaI	ACNGT	4 cut(s)	118, 884, 1592, 1805
TaiI	ACGT	1 cut(s)	658
TaqI	TCGA	4 cut(s)	77, 150, 1727, 2272
TatI	WGTACW	1 cut(s)	2661
TauI	GCSGC	3 cut(s)	398, 2289, 2536
TfiI	GAWTC	7 cut(s)	661, 856, 1211, 1241, 1355, 1409, 1559
TscAI	CASTG	4 cut(s)	889, 1987, 2512, 2572
TseFI	GTSAC	8 cut(s)	9, 757, 805, 1114, 1820, 1978, 2057, 2567
TseI	GCWGC	6 cut(s)	160, 565, 932, 949, 1379, 2000
Tsp45I	GTSAC	8 cut(s)	9, 757, 805, 1114, 1820, 1978, 2057, 2567
TspGWI	ACGGA	4 cut(s)	447, 1732, 1839, 1869
TspRI	CASTG	4 cut(s)	889, 1987, 2512, 2572
Vha464I	CTTAAG	1 cut(s)	2657
VpaK11BI	GGWCC	2 cut(s)	27, 233
XagI	CCTNNNNNAGG	1 cut(s)	2360
XapI	RAATTY	3 cut(s)	401, 1910, 2743
XceI	RCATGY	5 cut(s)	1487, 2252, 2518, 2656, 2680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2725
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	2 cut(s)	737, 2115
Zsp2I	ATGCAT	1 cut(s)	2682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.