Rmu_sc0000898.1_g000055

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000898.1
OG0000907
Physical Location & Seq
Forward (+)
241858 .. 243660
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000898.1_g000055.1.cds

Sequence Viewer

Length: 1326 bp
atggccttaatggtggtgtgccgctcaagtctctgcgacttgctatgcaagtttgcttgcagcccatgccgaagtacacctataaatagcctgctcgacagcgaggtacctcccctttcctttctcacaccgacgacggagaggagttacagagagaggttacatagggagattacaaagggaggctacgtagggagactatatagagaggtgacgaagtggagggaaattatggatagaagcaacggagggagcacgcatagggaggatacggagggagctcgcataaggaggctaaggaggctatggcaagaggttacggagtggagaagacttcctctccagtccgcattaattgttaggtcaaactcctctacagaatttttcacctccaacaagcggctatctggacagcagattaagtttgagaaaagttgtatctcattcagctgcaatgttcccagaagatggcaagatgttctggcaagtgtacttgggctgccagggaccgaggattttgaagtttcagacttgattgactatgaagagagagaatgggatggtgatttgttatctgaactcttttcggcagaggaagctagactaatctctagtataccattgaggttggcttctcctgcggacagactcatttggcattatgacaaacgtggtagatacagtgtgaaaagtggatatagtattgaagacgtgaagcacatattcatccactgtaatgctactgctatcatttggcatcatagcaatcttaatcttccactcattggacaacatgtcacttcactttatgaatgggtcaggtatgcttttgattctctccttggaccttcccttgagctattcttagttcttctatgggccatttggaaagaacgaaacaacattctttggaagaatgattgttttaatccaattaatgtacttgcatgggctactacttggttggaggagataaagaaggtgcaccgagattgctcacagaccacaaacagaaacaatatcgttcgcaaaccggctacacgttgttggactgctccttatgttgggagagttcaattaaatgtggacggggcctacaatctggacaacaagcttggcgctttgcacatggaggcaaaagccttacgtgcggggctgttggtagcgattcatgaaggctgggatgcaattgaagtggaaagtgattgtttattgctgattaatgctgtcaaagaacaggagtgtgacttttcacatataggttggatagttgacgatcactatgccaaaaaggcattcagacgacagaactgttctgtcgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

441

Amino Acids

50.96

Weight (kDa)

7.9

Isoelectric Point (pI)

57.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 106
AccB7I CCANNNNNTGG 2 cut(s) 468, 785
AccBSI CCGCTC 1 cut(s) 24
AccI GTMKAC 1 cut(s) 616
AciI CCGC 5 cut(s) 22, 348, 400, 641, 1151
AcsI RAATTY 1 cut(s) 380
AfaI GTAC 4 cut(s) 76, 108, 492, 942
AfiI CCNNNNNNNGG 4 cut(s) 399, 468, 785, 1064
AflIII ACRYGT 2 cut(s) 793, 1040
AgsI TTSAA 4 cut(s) 521, 707, 1076, 1193
AhdI GACNNNNNGTC 1 cut(s) 794
AjiI CACGTC 1 cut(s) 712
AjnI CCWGG 1 cut(s) 502
AjuI GAANNNNNNNTTGG 2 cut(s) 1280, 1312
AluBI AGCT 5 cut(s) 281, 450, 599, 859, 1114
AluI AGCT 5 cut(s) 281, 450, 599, 859, 1114
Alw21I GWGCWC 3 cut(s) 257, 283, 987
Alw26I GTCTC 2 cut(s) 35, 190
Alw44I GTGCAC 1 cut(s) 983
AoxI GGCC 3 cut(s) 3, 879, 1092
ApaLI GTGCAC 1 cut(s) 983
ApeKI GCWGC 3 cut(s) 60, 450, 499
ApoI RAATTY 1 cut(s) 380
AseI ATTAAT 3 cut(s) 353, 936, 1221
Asp718I GGTACC 1 cut(s) 106
AspLEI GCGC 1 cut(s) 1121
AspS9I GGNCC 4 cut(s) 507, 845, 879, 1092
AsuHPI GGTGA 3 cut(s) 223, 379, 575
AvaII GGWCC 2 cut(s) 507, 845
BaeGI GKGCMC 1 cut(s) 987
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 283
BbsI GAAGAC 2 cut(s) 337, 714
Bbv12I GWGCWC 3 cut(s) 257, 283, 987
BbvI GCAGC 3 cut(s) 72, 437, 486
BccI CCATC 2 cut(s) 462, 554
BcgI CGANNNNNNTGC 2 cut(s) 1265, 1299
BciT130I CCWGG 1 cut(s) 504
BciVI GTATCC 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 35, 190
BfaI CTAG 2 cut(s) 600, 612
BfmI CTRYAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 1122
BfuI GTATCC 1 cut(s) 262
BglI GCCNNNNNGGC 1 cut(s) 1292
BisI GCNGC 5 cut(s) 22, 61, 401, 451, 500
BlsI GCNGC 5 cut(s) 23, 62, 402, 452, 501
Bme1390I CCNGG 1 cut(s) 504
Bme18I GGWCC 2 cut(s) 507, 845
BmeRI GACNNNNNGTC 1 cut(s) 794
BmgBI CACGTC 1 cut(s) 712
BmgT120I GGNCC 4 cut(s) 507, 845, 879, 1092
BmiI GGNNCC 3 cut(s) 108, 508, 1093
BmrFI CCNGG 1 cut(s) 504
BmsI GCATC 2 cut(s) 766, 1174
BpiI GAAGAC 2 cut(s) 337, 714
BpmI CTGGAG 1 cut(s) 326
Bpu10I CCTNAGC 1 cut(s) 296
BpuEI CTTGAG 2 cut(s) 10, 875
BsaAI YACGTR 2 cut(s) 190, 1148
BsaJI CCNNGG 3 cut(s) 503, 510, 841
BsaXI ACNNNNNCTCC 4 cut(s) 174, 204, 324, 354
Bsc4I CCNNNNNNNGG 4 cut(s) 399, 468, 785, 1064
Bse118I RCCGGY 1 cut(s) 1033
Bse1I ACTGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 460
BseBI CCWGG 1 cut(s) 504
BseDI CCNNGG 3 cut(s) 503, 510, 841
BseGI GGATG 3 cut(s) 565, 726, 1189
BseLI CCNNNNNNNGG 4 cut(s) 399, 468, 785, 1064
BseMI GCAATG 1 cut(s) 460
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 3 cut(s) 157, 361, 983
BseSI GKGCMC 1 cut(s) 987
BseXI GCAGC 3 cut(s) 72, 437, 486
BseYI CCCAGC 1 cut(s) 1179
BshFI GGCC 3 cut(s) 5, 881, 1094
BshNI GGYRCC 1 cut(s) 106
BsiHKAI GWGCWC 3 cut(s) 257, 283, 987
BsiSI CCGG 1 cut(s) 1034
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 4 cut(s) 399, 468, 785, 1064
BsmAI GTCTC 2 cut(s) 35, 190
BsmFI GGGAC 1 cut(s) 520
BsmI GAATGC 1 cut(s) 1295
BsnI GGCC 3 cut(s) 5, 881, 1094
Bsp1286I GDGCHC 3 cut(s) 257, 283, 987
Bsp143I GATC 1 cut(s) 1276
BspACI CCGC 5 cut(s) 22, 348, 400, 641, 1151
BspANI GGCC 3 cut(s) 5, 881, 1094
BspHI TCATGA 1 cut(s) 1171
BspLI GGNNCC 3 cut(s) 108, 508, 1093
BspT107I GGYRCC 1 cut(s) 106
BsrBI CCGCTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 1033
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 1033
BssECI CCNNGG 3 cut(s) 503, 510, 841
BssMI GATC 1 cut(s) 1276
BssNAI GTATAC 1 cut(s) 617
BssT1I CCWWGG 1 cut(s) 841
Bst1107I GTATAC 1 cut(s) 617
Bst2UI CCWGG 1 cut(s) 504
Bst4CI ACNGT 3 cut(s) 683, 734, 1313
Bst6I CTCTTC 1 cut(s) 540
BstAPI GCANNNNNTGC 1 cut(s) 66
BstBAI YACGTR 2 cut(s) 190, 1148
BstC8I GCNNGC 4 cut(s) 58, 92, 257, 283
BstDEI CTNAG 2 cut(s) 296, 865
BstF5I GGATG 3 cut(s) 565, 726, 1189
BstH2I RGCGCY 1 cut(s) 1122
BstHHI GCGC 1 cut(s) 1121
BstKTI GATC 1 cut(s) 1279
BstMAI GTCTC 2 cut(s) 35, 190
BstMBI GATC 1 cut(s) 1276
BstMWI GCNNNNNNNGC 6 cut(s) 66, 301, 596, 638, 1148, 1292
BstNI CCWGG 1 cut(s) 504
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 1 cut(s) 502
BstSFI CTRYAG 1 cut(s) 375
BstSLI GKGCMC 1 cut(s) 987
BstSNI TACGTA 1 cut(s) 190
BstV1I GCAGC 3 cut(s) 72, 437, 486
BstV2I GAAGAC 2 cut(s) 337, 714
BstZ17I GTATAC 1 cut(s) 617
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 3 cut(s) 5, 881, 1094
BtrI CACGTC 1 cut(s) 712
BtsCI GGATG 3 cut(s) 565, 726, 1189
BtsIMutI CAGTG 2 cut(s) 688, 730
Cac8I GCNNGC 4 cut(s) 58, 92, 257, 283
CciI TCATGA 1 cut(s) 1171
CfoI GCGC 1 cut(s) 1121
Cfr10I RCCGGY 1 cut(s) 1033
Cfr13I GGNCC 4 cut(s) 507, 845, 879, 1092
Csp6I GTAC 4 cut(s) 75, 107, 491, 941
CspCI CAANNNNNGTGG 2 cut(s) 1176, 1211
CviAII CATG 5 cut(s) 66, 794, 948, 1129, 1172
CviQI GTAC 4 cut(s) 75, 107, 491, 941
DdeI CTNAG 2 cut(s) 296, 865
DpnI GATC 1 cut(s) 1278
DpnII GATC 1 cut(s) 1276
DriI GACNNNNNGTC 1 cut(s) 794
Eam1104I CTCTTC 1 cut(s) 540
Eam1105I GACNNNNNGTC 1 cut(s) 794
EarI CTCTTC 1 cut(s) 540
Ecl136II GAGCTC 1 cut(s) 281
Eco105I TACGTA 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 841
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 2 cut(s) 507, 845
Eco53kI GAGCTC 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 1092
EcoRII CCWGG 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 841
EcoT38I GRGCYC 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 841
FaeI CATG 5 cut(s) 69, 797, 951, 1132, 1175
FaqI GGGAC 1 cut(s) 520
FatI CATG 5 cut(s) 65, 793, 947, 1128, 1171
FauI CCCGC 1 cut(s) 1144
FblI GTMKAC 1 cut(s) 616
Fnu4HI GCNGC 5 cut(s) 22, 61, 401, 451, 500
FokI GGATG 3 cut(s) 572, 713, 1196
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 5 cut(s) 22, 61, 401, 451, 500
FspBI CTAG 2 cut(s) 600, 612
GlaI GCGC 1 cut(s) 1120
GluI GCNGC 5 cut(s) 22, 61, 401, 451, 500
GsaI CCCAGC 1 cut(s) 1183
GsuI CTGGAG 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 1122
HaeIII GGCC 3 cut(s) 5, 881, 1094
HapII CCGG 1 cut(s) 1034
HhaI GCGC 1 cut(s) 1121
Hin1II CATG 5 cut(s) 69, 797, 951, 1132, 1175
Hin6I GCGC 1 cut(s) 1119
HinP1I GCGC 1 cut(s) 1119
HincII GTYRAC 1 cut(s) 1273
HindII GTYRAC 1 cut(s) 1273
HindIII AAGCTT 1 cut(s) 1112
HinfI GANTC 3 cut(s) 648, 833, 1168
HpaII CCGG 1 cut(s) 1034
HphI GGTGA 3 cut(s) 223, 379, 575
Hpy166II GTNNAC 6 cut(s) 77, 491, 617, 985, 1087, 1273
Hpy188I TCNGA 4 cut(s) 529, 577, 1301, 1325
Hpy188III TCNNGA 3 cut(s) 408, 1103, 1172
Hpy8I GTNNAC 6 cut(s) 77, 491, 617, 985, 1087, 1273
Hpy99I CGWCG 2 cut(s) 136, 139
HpyAV CCTTC 3 cut(s) 858, 973, 1169
HpyCH4III ACNGT 3 cut(s) 683, 734, 1313
HpyCH4IV ACGT 5 cut(s) 189, 670, 711, 1042, 1147
HpyCH4V TGCA 7 cut(s) 48, 60, 453, 947, 985, 1126, 1187
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 301, 596, 638, 1148, 1292
HpyF3I CTNAG 2 cut(s) 296, 865
HpySE526I ACGT 5 cut(s) 189, 670, 711, 1042, 1147
Hsp92II CATG 5 cut(s) 69, 797, 951, 1132, 1175
HspAI GCGC 1 cut(s) 1119
KpnI GGTACC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 1276
LmnI GCTCC 3 cut(s) 252, 278, 1060
Lsp1109I GCAGC 3 cut(s) 72, 437, 486
LweI GCATC 2 cut(s) 766, 1174
MaeI CTAG 2 cut(s) 600, 612
MaeII ACGT 5 cut(s) 189, 670, 711, 1042, 1147
MaeIII GTNAC 6 cut(s) 146, 159, 211, 316, 796, 1244
MalI GATC 1 cut(s) 1278
MbiI CCGCTC 1 cut(s) 24
MboI GATC 1 cut(s) 1276
MboII GAAGA 7 cut(s) 342, 477, 557, 719, 767, 863, 925
MfeI CAATTG 1 cut(s) 1188
MhlI GDGCHC 3 cut(s) 257, 283, 987
MluCI AATT 6 cut(s) 228, 354, 380, 933, 1076, 1188
MlyI GAGTC 1 cut(s) 642
MmeI TCCRAC 4 cut(s) 417, 945, 1028, 1244
MseI TTAA 8 cut(s) 8, 353, 420, 771, 927, 936, 1079, 1221
MslI CAYNNNNRTG 1 cut(s) 735
MspA1I CMGCKG 1 cut(s) 450
MspI CCGG 1 cut(s) 1034
MspR9I CCNGG 1 cut(s) 504
MunI CAATTG 1 cut(s) 1188
Mva1269I GAATGC 1 cut(s) 1295
MvaI CCWGG 1 cut(s) 504
MwoI GCNNNNNNNGC 6 cut(s) 66, 301, 596, 638, 1148, 1292
NdeII GATC 1 cut(s) 1276
NlaIII CATG 5 cut(s) 69, 797, 951, 1132, 1175
NlaIV GGNNCC 3 cut(s) 108, 508, 1093
NmuCI GTSAC 3 cut(s) 211, 796, 1244
NspI RCATGY 1 cut(s) 797
PagI TCATGA 1 cut(s) 1171
PciI ACATGT 1 cut(s) 793
PctI GAATGC 1 cut(s) 1295
PfeI GAWTC 2 cut(s) 833, 1168
PflMI CCANNNNNTGG 2 cut(s) 468, 785
PkrI GCNGC 5 cut(s) 23, 62, 402, 452, 501
PleI GAGTC 1 cut(s) 642
PpsI GAGTC 1 cut(s) 642
Ppu21I YACGTR 2 cut(s) 190, 1148
PscI ACATGT 1 cut(s) 793
PshBI ATTAAT 3 cut(s) 353, 936, 1221
Psp124BI GAGCTC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 502
PspFI CCCAGC 1 cut(s) 1179
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 3 cut(s) 108, 508, 1093
PspPI GGNCC 4 cut(s) 507, 845, 879, 1092
PvuII CAGCTG 1 cut(s) 450
RsaI GTAC 4 cut(s) 76, 108, 492, 942
RsaNI GTAC 4 cut(s) 75, 107, 491, 941
RseI CAYNNNNRTG 1 cut(s) 735
SacI GAGCTC 1 cut(s) 283
SaqAI TTAA 8 cut(s) 8, 353, 420, 771, 927, 936, 1079, 1221
SatI GCNGC 5 cut(s) 22, 61, 401, 451, 500
Sau3AI GATC 1 cut(s) 1276
Sau96I GGNCC 4 cut(s) 507, 845, 879, 1092
SchI GAGTC 1 cut(s) 642
ScrFI CCNGG 1 cut(s) 504
SduI GDGCHC 3 cut(s) 257, 283, 987
SfaNI GCATC 2 cut(s) 766, 1174
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 2 cut(s) 507, 845
SmiMI CAYNNNNRTG 1 cut(s) 735
SmlI CTYRAG 2 cut(s) 25, 854
SmoI CTYRAG 2 cut(s) 25, 854
SnaBI TACGTA 1 cut(s) 190
Sse9I AATT 6 cut(s) 228, 354, 380, 933, 1076, 1188
SsiI CCGC 5 cut(s) 22, 348, 400, 641, 1151
SspMI CTAG 2 cut(s) 600, 612
SstI GAGCTC 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 502
StyI CCWWGG 1 cut(s) 841
TaaI ACNGT 3 cut(s) 683, 734, 1313
TaiI ACGT 5 cut(s) 192, 673, 714, 1045, 1150
TaqI TCGA 1 cut(s) 96
TaqII GACCGA 1 cut(s) 524
TasI AATT 6 cut(s) 228, 354, 380, 933, 1076, 1188
TatI WGTACW 3 cut(s) 74, 490, 940
TauI GCSGC 2 cut(s) 24, 403
TfiI GAWTC 2 cut(s) 833, 1168
Tru1I TTAA 8 cut(s) 8, 353, 420, 771, 927, 936, 1079, 1221
Tru9I TTAA 8 cut(s) 8, 353, 420, 771, 927, 936, 1079, 1221
TscAI CASTG 2 cut(s) 688, 737
TseFI GTSAC 3 cut(s) 211, 796, 1244
TseI GCWGC 3 cut(s) 60, 450, 499
Tsp45I GTSAC 3 cut(s) 211, 796, 1244
TspDTI ATGAA 5 cut(s) 558, 715, 825, 1160, 1188
TspGWI ACGGA 4 cut(s) 152, 261, 287, 335
TspRI CASTG 2 cut(s) 688, 737
Van91I CCANNNNNTGG 2 cut(s) 468, 785
VneI GTGCAC 1 cut(s) 983
VpaK11BI GGWCC 2 cut(s) 507, 845
VspI ATTAAT 3 cut(s) 353, 936, 1221
XapI RAATTY 1 cut(s) 380
XceI RCATGY 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 616
XspI CTAG 2 cut(s) 600, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.