Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

22222251 .. 22233046

Gene Structure 10796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG131800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3684 bp

ATGGGCATGATAGATAGTGGAAGTATGGAGCAGTCACACAAGGCACACAGGTCCCGGCAGTCGGGTTCCAAGGCCGATAAGAAGAAGCCCCAAAAAGAGTCGAAGAAGCAAAACCCCAAGGCGTTCGCCTTCAGCTCAACCGTCAAAGCAAAGCGTCTCCAGTCTCGTGCCGTCGAGAAAGAGCAGCGACGACTTCATGTTCCGACCATTGATCGCTCCTACGGCGAACAGCCTCCTTTTGTTGTTCTTGTCCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACAGGAGGTTAAAGGCCCGATTACCATAGTAACAGGGAAGCAGAGGCGGGTCCAGTTTGTGGAGTGCCCCAATGATATCAATGCCATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTTCTTATAGACGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCACAGATGCAAAGAAACTGAGGAAAACAAAGCAGCATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGGCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATATCACTCCCCCTGAAAAAATGCGCTTGAATAATAAATGTGATAGAAATGTCACACTTTATGGTTATTTGCGGGGGTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTACAGTGTCGCTGGTATGACAGGCTTAGCTGATCCATGTCCTTTACCCTCAGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCTATGTCTGGACTTGGGGATCTCATGTATGACAAAGATGCTGTTTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAGGATGAAAAGGGGGAAGCAACGAACAAAGGAGAGCTTGAGGATGTGGGTGTGACCATGGTTAAAAGTCTTCAAAACCCAAAGTATTCGCTTGATGAAAAGTTGGAGCAGAGCTTCATTAACTTTTATATCCAGAAACCTAAATTGGAATCTCAAAATGATGAAAAAGATCTTGATGAATCCAGAAAATGCATTCGTATGATAGAGCCTGTGGAGAAACATCAATTTGGGGAAACAATGAAAGCTGGGGGTTCTGGTCAAGAAAGTAATGTTGAGGATATTGATGGCTCAGAATCAAAATCTTATCAGAATGATGCTGTTCGTAATGTTGCAATTACAAAAAGTGATTCTAGTGGATCTGATAGAGAAAATGGTGATGTATCAGATCAAGATGTTAACCTTAAAGATCGCTTGAAGGAACATGTTGAGTTTCATGATGGAAGGTCGAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGAGGAGTCAGAAGATGATGATGACGGTGGCGATAATGATGCAGATAATCATACCTCTTCCGGTTCAGAGTCTTCAGAGGAAGATAGAGAAATTCATGAGACAGATGATGATGTGGGAAATATAGCAAAGTGGAAAGAGTCTTTGGCGGAACGGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCATCGGTTTCAACTAAAGCCAATGAAGAACAAGACAGTAGTGATGAGGACAGTGATGGAGATGACTTTTTTAGGCCAAAAGGAGATGGAATTAAGAAACATAGAGTAGAAGCAGGAAATTGGAATGTTGAGGACTCTTCCAAATTTACAAATCACTCAATCAAAGACTGGAATGATAAAAAGCTTATAGAGAGTGTGCGCGATCGCTTTGTCACTGGCGATTGGTCAAAGGCTGCTAAAAGAAATCAAGACACAGAGGCCACATTTGAAGATGAAGATGCAGTCTTTGGTGACTTTGAAGATATAGAAACAGGTGAGAAGCATGATGGATATCATACAAATGAGACAAGAAAATTTGCAAACAACAAGAAAGCTGGCTTAGATGAAGAGGAGCGCAGGCTCAAAAAGCTTGCTCTTCGTGCCAAGTTTGATGCCCAATATCCTTTTGACACCAAAGAGTCTTTTGTGACCTTAATATTAAATACATATGATGAACCTGATACAAGTGAGGAGGAACCTGATGATACACATGTAAGCCAGTTTGGACGAGATCGAGCTAAAGAAAGCGGCTATGTTGACAAGCTGAAGGAGGAGATTGAACTCCGGAAACAAATGAATATAGCTGAACTCAATGACCTTGATGAGGACACCCGATTAGAGGTCGAGGGTTTCCGTACAGGGACTTACCTTCGGTTGGAAGTTCATGATGTTCCTTATGAGATGGTTGAATATTTTAATCCCTGCCATCCTGTTTTGGTTGGAGGAATTGGTCTTGGGGAAGAAAGCACTGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTGCTAAAGACCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCCGTTTATGCCATTGAAGATTGCAACGGAAGGCATCGCATGCTTAAGTACACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCTAATACTGGTGTGGTTGCTTTCCAGAATTTGTCAAACAATCAGGCAACATTTAGGATCACCGCCACGGCAGTTGTGCTTGAGTTCAACCATGCATCCCGAATAGTGAAGAAACTCAAACTAGTTGGTTACCCTTGCAAGATATTCAAGAATACAGCACTTATAAGAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCTGTTCGAACAGTCAGTGGCATCCGGGGGCAGGTGAAAAAGGCTGCAAAAGAAGAAATTGGTAACCAACCAAAAAAGAAGGGTGGACAACCAAAAGAAGGAATTGTTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTGTTTTTGCGCGCTTGGACTCAAGTTGATGTGCCTTGCTTTTATAACCCATTAACCACATCTCTGCAACCCCGTGATGTGACCTGGCAAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGACCGCAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCAATTGAAAGGAAGCAGAGGAAGTTCAACCCACTGGTGATTCCCAAAGCAGTACAAGCAAGTCTTCCATTTAAATCAAAGCCTAAGGATACACCGAATAGAAGAAAGCAACTTCTTGAAGATAGAAGAGCTGTTGTGAGGGAGCCTCATGAACAGAAAATTCATGCTCTGCTTCAAAATCTTCGGTTAATCAAATCAGAGAAGTTAAAGAAGCGCAAGATAAAGGATGAGAAGAAAAGAAAAGAAATTGAAGCACAGAAAGCCAAAGATGAGCAGTTGTCAAGAAAGCGCCAGAGAGAAGAACGACGAGAGAGATACCGGGTGCAAGACAAAGCTCAGAAGAAAATGAGGAGATATGCGGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1227

Amino Acids

141.04

Weight (kDa)

8.53

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	240 - 313	4.1e-26	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	767 - 1060	4.8e-84	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2954, 3195
AarI	CACCTGC	2 cut(s)	881, 3025
Acc36I	ACCTGC	2 cut(s)	881, 3025
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccII	CGCG	2 cut(s)	1995, 3162
AccIII	TCCGGA	1 cut(s)	2397
AciI	CCGC	9 cut(s)	370, 420, 850, 1736, 2361, 2608, 2853, 3274, 3674
AclWI	GGATC	4 cut(s)	929, 1029, 1450, 2855
AcsI	RAATTY	6 cut(s)	425, 1680, 1937, 2147, 2818, 3474
AcuI	CTGAAG	3 cut(s)	115, 1647, 2399
AfaI	GTAC	3 cut(s)	2470, 2738, 3369
AflII	CTTAAG	1 cut(s)	2732
AflIII	ACRYGT	2 cut(s)	1507, 2323
AhlI	ACTAGT	1 cut(s)	2911
AjnI	CCWGG	3 cut(s)	1086, 2597, 3233
AjuI	GAANNNNNNNTTGG	4 cut(s)	1214, 1246, 1715, 1747
AloI	GAACNNNNNNTCC	2 cut(s)	733, 765
Alw21I	GWGCWC	1 cut(s)	3119
Alw26I	GTCTC	6 cut(s)	161, 168, 1682, 1747, 2132, 3264
Alw44I	GTGCAC	1 cut(s)	3115
AlwI	GGATC	4 cut(s)	929, 1029, 1450, 2855
Aor13HI	TCCGGA	1 cut(s)	2397
AoxI	GGCC	6 cut(s)	72, 337, 1868, 2052, 2595, 2776
ApaI	GGGCCC	1 cut(s)	2780
ApaLI	GTGCAC	1 cut(s)	3115
ApeKI	GCWGC	6 cut(s)	184, 589, 956, 973, 2027, 3047
ApoI	RAATTY	6 cut(s)	425, 1680, 1937, 2147, 2818, 3474
AsiSI	GCGATCGC	1 cut(s)	1999
AspLEI	GCGC	7 cut(s)	804, 1995, 2190, 3162, 3164, 3531, 3606
AspS9I	GGNCC	6 cut(s)	51, 257, 338, 373, 2776, 2777
AsuC2I	CCSGG	3 cut(s)	55, 3029, 3635
AsuHPI	GGTGA	8 cut(s)	536, 911, 1472, 2096, 2120, 2842, 3049, 3364
AsuII	TTCGAA	1 cut(s)	3010
AvaII	GGWCC	3 cut(s)	51, 257, 373
AxyI	CCTNAGG	1 cut(s)	3399
BaeGI	GKGCMC	3 cut(s)	392, 2780, 3119
BaeI	ACNNNNGTAYC	2 cut(s)	2310, 2343
BanII	GRGCYC	1 cut(s)	2780
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	3 cut(s)	1148, 1653, 3371
Bbv12I	GWGCWC	1 cut(s)	3119
BbvCI	CCTCAGC	1 cut(s)	952
BbvI	GCAGC	6 cut(s)	196, 601, 943, 960, 2014, 3034
BceAI	ACGGC	3 cut(s)	155, 238, 2874
BcgI	CGANNNNNNTGC	2 cut(s)	1610, 1644
BciT130I	CCWGG	3 cut(s)	1088, 2599, 3235
BciVI	GTATCC	2 cut(s)	2579, 3397
BclI	TGATCA	2 cut(s)	285, 1063
BcnI	CCSGG	3 cut(s)	55, 3029, 3635
BcoDI	GTCTC	6 cut(s)	161, 168, 1682, 1747, 2132, 3264
BcuI	ACTAGT	1 cut(s)	2911
BfaI	CTAG	3 cut(s)	761, 1437, 2912
BfmI	CTRYAG	1 cut(s)	3252
BfoI	RGCGCY	1 cut(s)	3607
BfrI	CTTAAG	1 cut(s)	2732
BfuAI	ACCTGC	2 cut(s)	881, 3025
BfuI	GTATCC	2 cut(s)	2579, 3397
BglII	AGATCT	2 cut(s)	1255, 2974
BisI	GCNGC	9 cut(s)	185, 420, 590, 957, 974, 2028, 2362, 2609, 3048
BlpI	GCTNAGC	1 cut(s)	928
BlsI	GCNGC	9 cut(s)	186, 421, 591, 958, 975, 2029, 2363, 2610, 3049
Bme1390I	CCNGG	6 cut(s)	55, 1088, 2599, 3029, 3235, 3635
Bme18I	GGWCC	3 cut(s)	51, 257, 373
BmgT120I	GGNCC	6 cut(s)	51, 257, 338, 373, 2776, 2777
BmiI	GGNNCC	7 cut(s)	53, 67, 374, 2310, 2777, 2778, 3459
BmrFI	CCNGG	6 cut(s)	55, 1088, 2599, 3029, 3235, 3635
BpiI	GAAGAC	3 cut(s)	1148, 1653, 3371
BplI	GAGNNNNNCTC	4 cut(s)	730, 762, 3445, 3477
BpmI	CTGGAG	2 cut(s)	143, 2727
Bpu10I	CCTNAGC	1 cut(s)	952
Bpu1102I	GCTNAGC	1 cut(s)	928
Bpu14I	TTCGAA	1 cut(s)	3010
BpuEI	CTTGAG	3 cut(s)	1145, 2891, 3156
BpuMI	CCSGG	3 cut(s)	55, 3029, 3635
BsaBI	GATNNNNATC	1 cut(s)	2124
BsaI	GGTCTC	1 cut(s)	3264
BsaJI	CCNNGG	8 cut(s)	69, 117, 253, 264, 511, 1143, 2856, 3028
BsaWI	WCCGGW	2 cut(s)	1649, 2397
Bse1I	ACTGG	9 cut(s)	160, 376, 1967, 2014, 2332, 2587, 2640, 2803, 3354
Bse21I	CCTNAGG	1 cut(s)	3399
Bse3DI	GCAATG	3 cut(s)	440, 2755, 2772
Bse8I	GATNNNNATC	1 cut(s)	2124
BseAI	TCCGGA	1 cut(s)	2397
BseBI	CCWGG	3 cut(s)	1088, 2599, 3235
BseDI	CCNNGG	8 cut(s)	69, 117, 253, 264, 511, 1143, 2856, 3028
BseGI	GGATG	9 cut(s)	724, 748, 1096, 1135, 2539, 2885, 3024, 3249, 3547
BseJI	GATNNNNATC	1 cut(s)	2124
BseMI	GCAATG	3 cut(s)	440, 2755, 2772
BseMII	CTCAG	6 cut(s)	566, 966, 1389, 2985, 3249, 3665
BseNI	ACTGG	9 cut(s)	160, 376, 1967, 2014, 2332, 2587, 2640, 2803, 3354
BsePI	GCGCGC	1 cut(s)	3160
BseRI	GAGGAG	7 cut(s)	1549, 1607, 2198, 2318, 2399, 3280, 3679
BseSI	GKGCMC	3 cut(s)	392, 2780, 3119
BseXI	GCAGC	6 cut(s)	196, 601, 943, 960, 2014, 3034
BseYI	CCCAGC	1 cut(s)	1331
Bsh1236I	CGCG	2 cut(s)	1995, 3162
Bsh1285I	CGRYCG	1 cut(s)	1999
BshFI	GGCC	6 cut(s)	74, 339, 1870, 2054, 2597, 2778
BsiEI	CGRYCG	1 cut(s)	1999
BsiHKAI	GWGCWC	1 cut(s)	3119
BsiSI	CCGG	5 cut(s)	55, 1650, 2398, 3028, 3634
BslFI	GGGAC	3 cut(s)	37, 277, 2488
BsmAI	GTCTC	6 cut(s)	161, 168, 1682, 1747, 2132, 3264
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	3 cut(s)	37, 277, 2488
BsmI	GAATGC	1 cut(s)	1278
BsnI	GGCC	6 cut(s)	74, 339, 1870, 2054, 2597, 2778
Bso31I	GGTCTC	1 cut(s)	3264
Bsp119I	TTCGAA	1 cut(s)	3010
Bsp120I	GGGCCC	1 cut(s)	2776
Bsp1286I	GDGCHC	3 cut(s)	392, 2780, 3119
Bsp13I	TCCGGA	1 cut(s)	2397
Bsp1720I	GCTNAGC	1 cut(s)	928
Bsp19I	CCATGG	3 cut(s)	253, 511, 1143
BspACI	CCGC	9 cut(s)	370, 420, 850, 1736, 2361, 2608, 2853, 3274, 3674
BspANI	GGCC	6 cut(s)	74, 339, 1870, 2054, 2597, 2778
BspCNI	CTCAG	6 cut(s)	567, 965, 1388, 2984, 3250, 3664
BspEI	TCCGGA	1 cut(s)	2397
BspFNI	CGCG	2 cut(s)	1995, 3162
BspHI	TCATGA	5 cut(s)	661, 1519, 1684, 2497, 3463
BspLI	GGNNCC	7 cut(s)	53, 67, 374, 2310, 2777, 2778, 3459
BspMI	ACCTGC	2 cut(s)	881, 3025
BspPI	GGATC	4 cut(s)	929, 1029, 1450, 2855
BspQI	GCTCTTC	2 cut(s)	2214, 3436
BspT104I	TTCGAA	1 cut(s)	3010
BspTI	CTTAAG	1 cut(s)	2732
BspTNI	GGTCTC	1 cut(s)	3264
BsrDI	GCAATG	3 cut(s)	440, 2755, 2772
BsrI	ACTGG	9 cut(s)	160, 376, 1967, 2014, 2332, 2587, 2640, 2803, 3354
BssECI	CCNNGG	8 cut(s)	69, 117, 253, 264, 511, 1143, 2856, 3028
BssHII	GCGCGC	1 cut(s)	3160
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	6 cut(s)	69, 117, 253, 264, 511, 1143
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	3 cut(s)	1088, 2599, 3235
Bst4CI	ACNGT	7 cut(s)	142, 908, 1616, 1832, 1847, 3016, 3253
Bst6I	CTCTTC	6 cut(s)	1584, 1651, 1936, 2175, 2214, 3436
BstAFI	CTTAAG	1 cut(s)	2732
BstAPI	GCANNNNNTGC	2 cut(s)	428, 2728
BstBI	TTCGAA	1 cut(s)	3010
BstC8I	GCNNGC	6 cut(s)	2170, 2192, 2205, 2595, 2729, 3162
BstDEI	CTNAG	9 cut(s)	575, 928, 952, 1375, 2173, 2971, 3258, 3399, 3651
BstDSI	CCRYGG	4 cut(s)	253, 511, 1143, 2856
BstEII	GGTNACC	2 cut(s)	2918, 3065
BstENI	CCTNNNNNAGG	1 cut(s)	2435
BstF5I	GGATG	9 cut(s)	724, 748, 1096, 1135, 2539, 2885, 3024, 3249, 3547
BstFNI	CGCG	2 cut(s)	1995, 3162
BstH2I	RGCGCY	1 cut(s)	3607
BstHHI	GCGC	7 cut(s)	804, 1995, 2190, 3162, 3164, 3531, 3606
BstMAI	GTCTC	6 cut(s)	161, 168, 1682, 1747, 2132, 3264
BstMCI	CGRYCG	1 cut(s)	1999
BstMWI	GCNNNNNNNGC	9 cut(s)	222, 428, 437, 2200, 2213, 2617, 2728, 3371, 3575
BstNI	CCWGG	3 cut(s)	1088, 2599, 3235
BstNSI	RCATGY	5 cut(s)	1511, 2327, 2593, 2731, 2755
BstPI	GGTNACC	2 cut(s)	2918, 3065
BstSCI	CCNGG	6 cut(s)	53, 1086, 2597, 3027, 3233, 3633
BstSFI	CTRYAG	1 cut(s)	3252
BstSLI	GKGCMC	3 cut(s)	392, 2780, 3119
BstUI	CGCG	2 cut(s)	1995, 3162
BstV1I	GCAGC	6 cut(s)	196, 601, 943, 960, 2014, 3034
BstV2I	GAAGAC	3 cut(s)	1148, 1653, 3371
BstX2I	RGATCY	4 cut(s)	1021, 1255, 1442, 2974
BstYI	RGATCY	4 cut(s)	1021, 1255, 1442, 2974
Bsu36I	CCTNAGG	1 cut(s)	3399
BsuI	GTATCC	2 cut(s)	2579, 3397
BsuRI	GGCC	6 cut(s)	74, 339, 1870, 2054, 2597, 2778
BtgI	CCRYGG	4 cut(s)	253, 511, 1143, 2856
BtgZI	GCGATG	1 cut(s)	2708
BtsCI	GGATG	9 cut(s)	724, 748, 1096, 1135, 2539, 2885, 3024, 3249, 3547
BtsIMutI	CAGTG	7 cut(s)	913, 1852, 2007, 2580, 2647, 3025, 3347
BveI	ACCTGC	2 cut(s)	881, 3025
Cac8I	GCNNGC	6 cut(s)	2170, 2192, 2205, 2595, 2729, 3162
CciI	TCATGA	5 cut(s)	661, 1519, 1684, 2497, 3463
CfoI	GCGC	7 cut(s)	804, 1995, 2190, 3162, 3164, 3531, 3606
Cfr13I	GGNCC	6 cut(s)	51, 257, 338, 373, 2776, 2777
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	3 cut(s)	2469, 2737, 3368
CspCI	CAANNNNNGTGG	2 cut(s)	2845, 2880
CviQI	GTAC	3 cut(s)	2469, 2737, 3368
DdeI	CTNAG	9 cut(s)	575, 928, 952, 1375, 2173, 2971, 3258, 3399, 3651
DraI	TTTAAA	2 cut(s)	597, 3388
Eam1104I	CTCTTC	6 cut(s)	1584, 1651, 1936, 2175, 2214, 3436
EarI	CTCTTC	6 cut(s)	1584, 1651, 1936, 2175, 2214, 3436
EciI	GGCGGA	1 cut(s)	1751
Eco130I	CCWWGG	6 cut(s)	69, 117, 253, 264, 511, 1143
Eco24I	GRGCYC	1 cut(s)	2780
Eco31I	GGTCTC	1 cut(s)	3264
Eco32I	GATATC	3 cut(s)	400, 781, 2126
Eco47I	GGWCC	3 cut(s)	51, 257, 373
Eco57I	CTGAAG	3 cut(s)	115, 1647, 2399
Eco81I	CCTNAGG	1 cut(s)	3399
Eco91I	GGTNACC	2 cut(s)	2918, 3065
EcoNI	CCTNNNNNAGG	1 cut(s)	2435
EcoO109I	RGGNCCY	3 cut(s)	51, 2776, 2777
EcoO65I	GGTNACC	2 cut(s)	2918, 3065
EcoRII	CCWGG	3 cut(s)	1086, 2597, 3233
EcoRV	GATATC	3 cut(s)	400, 781, 2126
EcoT14I	CCWWGG	6 cut(s)	69, 117, 253, 264, 511, 1143
EcoT22I	ATGCAT	3 cut(s)	1280, 2757, 2887
EcoT38I	GRGCYC	1 cut(s)	2780
ErhI	CCWWGG	6 cut(s)	69, 117, 253, 264, 511, 1143
Esp3I	CGTCTC	1 cut(s)	161
FalI	AAGNNNNNCTT	4 cut(s)	1107, 1139, 3363, 3395
FaqI	GGGAC	3 cut(s)	37, 277, 2488
FauI	CCCGC	2 cut(s)	363, 843
FauNDI	CATATG	1 cut(s)	2281
FbaI	TGATCA	2 cut(s)	285, 1063
Fnu4HI	GCNGC	9 cut(s)	185, 420, 590, 957, 974, 2028, 2362, 2609, 3048
FokI	GGATG	9 cut(s)	711, 735, 1103, 1142, 2526, 2872, 3011, 3256, 3554
FriOI	GRGCYC	1 cut(s)	2780
Fsp4HI	GCNGC	9 cut(s)	185, 420, 590, 957, 974, 2028, 2362, 2609, 3048
FspBI	CTAG	3 cut(s)	761, 1437, 2912
GlaI	GCGC	7 cut(s)	803, 1994, 2189, 3161, 3163, 3530, 3605
GluI	GCNGC	9 cut(s)	185, 420, 590, 957, 974, 2028, 2362, 2609, 3048
GsaI	CCCAGC	1 cut(s)	1335
GsuI	CTGGAG	2 cut(s)	143, 2727
HaeII	RGCGCY	1 cut(s)	3607
HaeIII	GGCC	6 cut(s)	74, 339, 1870, 2054, 2597, 2778
HapII	CCGG	5 cut(s)	55, 1650, 2398, 3028, 3634
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	7 cut(s)	804, 1995, 2190, 3162, 3164, 3531, 3606
Hin6I	GCGC	7 cut(s)	802, 1993, 2188, 3160, 3162, 3529, 3604
HinP1I	GCGC	7 cut(s)	802, 1993, 2188, 3160, 3162, 3529, 3604
HincII	GTYRAC	3 cut(s)	1483, 2371, 3295
HindII	GTYRAC	3 cut(s)	1483, 2371, 3295
HindIII	AAGCTT	2 cut(s)	1976, 2201
HpaI	GTTAAC	2 cut(s)	1483, 3295
HpaII	CCGG	5 cut(s)	55, 1650, 2398, 3028, 3634
HphI	GGTGA	8 cut(s)	536, 911, 1472, 2096, 2120, 2842, 3049, 3364
Hpy166II	GTNNAC	8 cut(s)	558, 1483, 2371, 2739, 2967, 3089, 3117, 3295
Hpy8I	GTNNAC	8 cut(s)	558, 1483, 2371, 2739, 2967, 3089, 3117, 3295
Hpy99I	CGWCG	3 cut(s)	176, 192, 3624
HpyCH4III	ACNGT	7 cut(s)	142, 908, 1616, 1832, 1847, 3016, 3253
HpyCH4IV	ACGT	1 cut(s)	679
HpyF10VI	GCNNNNNNNGC	9 cut(s)	222, 428, 437, 2200, 2213, 2617, 2728, 3371, 3575
HpyF3I	CTNAG	9 cut(s)	575, 928, 952, 1375, 2173, 2971, 3258, 3399, 3651
HpySE526I	ACGT	1 cut(s)	679
HspAI	GCGC	7 cut(s)	802, 1993, 2188, 3160, 3162, 3529, 3604
Kpn2I	TCCGGA	1 cut(s)	2397
Ksp22I	TGATCA	2 cut(s)	285, 1063
KspAI	GTTAAC	2 cut(s)	1483, 3295
LguI	GCTCTTC	2 cut(s)	2214, 3436
LmnI	GCTCC	6 cut(s)	28, 221, 629, 1192, 2185, 3457
Lsp1109I	GCAGC	6 cut(s)	196, 601, 943, 960, 2014, 3034
MaeI	CTAG	3 cut(s)	761, 1437, 2912
MaeII	ACGT	1 cut(s)	679
MfeI	CAATTG	1 cut(s)	3318
MflI	RGATCY	4 cut(s)	1021, 1255, 1442, 2974
MhlI	GDGCHC	3 cut(s)	392, 2780, 3119
MlyI	GAGTC	7 cut(s)	107, 1604, 1667, 1736, 1922, 2261, 3163
MmeI	TCCRAC	4 cut(s)	227, 1170, 2469, 2533
Mph1103I	ATGCAT	3 cut(s)	1280, 2757, 2887
MroI	TCCGGA	1 cut(s)	2397
MslI	CAYNNNNRTG	3 cut(s)	753, 1283, 2133
MspA1I	CMGCKG	1 cut(s)	956
MspCI	CTTAAG	1 cut(s)	2732
MspI	CCGG	5 cut(s)	55, 1650, 2398, 3028, 3634
MspR9I	CCNGG	6 cut(s)	55, 1088, 2599, 3029, 3235, 3635
MunI	CAATTG	1 cut(s)	3318
Mva1269I	GAATGC	1 cut(s)	1278
MvaI	CCWGG	3 cut(s)	1088, 2599, 3235
MvnI	CGCG	2 cut(s)	1995, 3162
MwoI	GCNNNNNNNGC	9 cut(s)	222, 428, 437, 2200, 2213, 2617, 2728, 3371, 3575
NciI	CCSGG	3 cut(s)	55, 3029, 3635
NcoI	CCATGG	3 cut(s)	253, 511, 1143
NdeI	CATATG	1 cut(s)	2281
NlaIV	GGNNCC	7 cut(s)	53, 67, 374, 2310, 2777, 2778, 3459
NmuCI	GTSAC	9 cut(s)	33, 829, 1138, 2005, 2084, 2260, 2642, 3143, 3229
NsiI	ATGCAT	3 cut(s)	1280, 2757, 2887
NspI	RCATGY	5 cut(s)	1511, 2327, 2593, 2731, 2755
NspV	TTCGAA	1 cut(s)	3010
PaeI	GCATGC	1 cut(s)	2731
PagI	TCATGA	5 cut(s)	661, 1519, 1684, 2497, 3463
PaqCI	CACCTGC	2 cut(s)	881, 3025
PauI	GCGCGC	1 cut(s)	3160
PciI	ACATGT	2 cut(s)	1507, 2323
PciSI	GCTCTTC	2 cut(s)	2214, 3436
PctI	GAATGC	1 cut(s)	1278
PfeI	GAWTC	9 cut(s)	685, 880, 1235, 1265, 1379, 1433, 1583, 3302, 3355
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	9 cut(s)	186, 421, 591, 958, 975, 2029, 2363, 2610, 3049
Ple19I	CGATCG	1 cut(s)	1999
PleI	GAGTC	7 cut(s)	106, 1603, 1666, 1735, 1922, 2260, 3163
PpsI	GAGTC	7 cut(s)	106, 1603, 1666, 1735, 1922, 2260, 3163
PpuMI	RGGWCCY	1 cut(s)	51
PscI	ACATGT	2 cut(s)	1507, 2323
PsiI	TTATAA	2 cut(s)	2954, 3195
Psp5II	RGGWCCY	1 cut(s)	51
Psp6I	CCWGG	3 cut(s)	1086, 2597, 3233
PspEI	GGTNACC	2 cut(s)	2918, 3065
PspFI	CCCAGC	1 cut(s)	1331
PspGI	CCWGG	3 cut(s)	1086, 2597, 3233
PspN4I	GGNNCC	7 cut(s)	53, 67, 374, 2310, 2777, 2778, 3459
PspOMI	GGGCCC	1 cut(s)	2776
PspPI	GGNCC	6 cut(s)	51, 257, 338, 373, 2776, 2777
PspPPI	RGGWCCY	1 cut(s)	51
PsuI	RGATCY	4 cut(s)	1021, 1255, 1442, 2974
PteI	GCGCGC	1 cut(s)	3160
PvuI	CGATCG	1 cut(s)	1999
PvuII	CAGCTG	1 cut(s)	956
RgaI	GCGATCGC	1 cut(s)	1999
RsaI	GTAC	3 cut(s)	2470, 2738, 3369
RsaNI	GTAC	3 cut(s)	2469, 2737, 3368
RseI	CAYNNNNRTG	3 cut(s)	753, 1283, 2133
SapI	GCTCTTC	2 cut(s)	2214, 3436
SatI	GCNGC	9 cut(s)	185, 420, 590, 957, 974, 2028, 2362, 2609, 3048
Sau96I	GGNCC	6 cut(s)	51, 257, 338, 373, 2776, 2777
SchI	GAGTC	7 cut(s)	107, 1604, 1667, 1736, 1922, 2261, 3163
ScrFI	CCNGG	6 cut(s)	55, 1088, 2599, 3029, 3235, 3635
SduI	GDGCHC	3 cut(s)	392, 2780, 3119
SfaAI	GCGATCGC	1 cut(s)	1999
SfcI	CTRYAG	1 cut(s)	3252
SfuI	TTCGAA	1 cut(s)	3010
SgfI	GCGATCGC	1 cut(s)	1999
SinI	GGWCC	3 cut(s)	51, 257, 373
SmiI	ATTTAAAT	1 cut(s)	3388
SmiMI	CAYNNNNRTG	3 cut(s)	753, 1283, 2133
SmlI	CTYRAG	4 cut(s)	1124, 2732, 2870, 3171
SmoI	CTYRAG	4 cut(s)	1124, 2732, 2870, 3171
SpeI	ACTAGT	1 cut(s)	2911
SphI	GCATGC	1 cut(s)	2731
SsiI	CCGC	9 cut(s)	370, 420, 850, 1736, 2361, 2608, 2853, 3274, 3674
SspI	AATATT	3 cut(s)	2271, 2525, 3280
SspMI	CTAG	3 cut(s)	761, 1437, 2912
StyD4I	CCNGG	6 cut(s)	53, 1086, 2597, 3027, 3233, 3633
StyI	CCWWGG	6 cut(s)	69, 117, 253, 264, 511, 1143
SwaI	ATTTAAAT	1 cut(s)	3388
TaaI	ACNGT	7 cut(s)	142, 908, 1616, 1832, 1847, 3016, 3253
TaiI	ACGT	1 cut(s)	682
TaqI	TCGA	8 cut(s)	101, 174, 1532, 1751, 2347, 2457, 2989, 3010
TatI	WGTACW	2 cut(s)	2736, 3367
TauI	GCSGC	3 cut(s)	422, 2364, 2611
TfiI	GAWTC	9 cut(s)	685, 880, 1235, 1265, 1379, 1433, 1583, 3302, 3355
TscAI	CASTG	7 cut(s)	913, 1852, 2014, 2587, 2647, 3025, 3354
TseFI	GTSAC	9 cut(s)	33, 829, 1138, 2005, 2084, 2260, 2642, 3143, 3229
TseI	GCWGC	6 cut(s)	184, 589, 956, 973, 2027, 3047
Tsp45I	GTSAC	9 cut(s)	33, 829, 1138, 2005, 2084, 2260, 2642, 3143, 3229
TspGWI	ACGGA	4 cut(s)	471, 1756, 2456, 2730
TspRI	CASTG	7 cut(s)	913, 1852, 2014, 2587, 2647, 3025, 3354
Van91I	CCANNNNNTGG	1 cut(s)	382
Vha464I	CTTAAG	1 cut(s)	2732
VneI	GTGCAC	1 cut(s)	3115
VpaK11BI	GGWCC	3 cut(s)	51, 257, 373
XagI	CCTNNNNNAGG	1 cut(s)	2435
XapI	RAATTY	6 cut(s)	425, 1680, 1937, 2147, 2818, 3474
XceI	RCATGY	5 cut(s)	1511, 2327, 2593, 2731, 2755
XspI	CTAG	3 cut(s)	761, 1437, 2912
Zsp2I	ATGCAT	3 cut(s)	1280, 2757, 2887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.