Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

15192875 .. 15195670

Gene Structure 2796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0181600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCATTTCTGAGGTCAGTGGCCACCACTAGTGCCATAGCTGCCTCTCTATTACCCGCTGCCATTGCCCTTTCTTCTTCTTCTTCCTCCTCTCAATCTTTCCGATTCCCTAAACCCCAAAACCTCTCCTTTCTCTCCTCCTTCTCCTTCCCAAACCCAAATCCTCTGTTCCTCGCTACAAGCCTCACCAACTCTCCCTCAGCTCTCCACATGGACGCGCCCACATCGGAACAGAAGCCCTCCTTTGAGAGTGATGCTGTATTCCCAGAGCTACTGACAGAGTACATGGTAGATATGACATGTGAGAGTTGTGTTAAGGCTGTCAAGAATAAGTTACAAGTTGTTGATGGGGTTAAAAGTGTAGAGGCGGACCTCGACACCCAAGTTGTTAGGATTCTGGGTGCAACCCCTCTGAAGACCATGACTGAAGCTCTCGAGCAGACGGGTCGAAAAGCGAGATTAATTGGGCAGGGGATTCCAGAAGATTTCTTGGTTTCCGCTGCTGTCGCTGAATTTAAAGGTCCAGATGTTTTTGGTGTGGTTCGATTTGCTCAGGTGAATATGGAGTTGGCTAGAATTGAAGCTAACTTTAGTGGGTTATCACCTGGGAAACATGGTTGGTCCGTTAATGAATTTGGTGATTTAACAAAAGGTGCTGCTAGCACTGGAAAAGTATTTAATCCATCTACTGAAAGTGTAAACAAGCCGCTTGGTGACCTGGGAACATTGGATACTGATGAGAATGGCAATGCCTTCTTCTCTGGTGTCAAAGAGAAGCTGAGAGTTTCTGATCTTATTGGGAGGTCAATAGCAGTATATGGAACTGCTGACAAGTCAGATTCGGGTGTCGCAGCTGCTGTAATCGCTAGAAGCGCTGGAGTAGGTGAGAACTACAAGAAGCTTTGCACTTGTGATGGGACCACGATATGGGAATCAAGTGACAAAGACTTTGTCATGAGCAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

322

Amino Acids

34.12

Weight (kDa)

5.16

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	96 - 151	2.8e-12	Heavy-metal-associated domain
Sod_Cu	PF00080	178 - 280	2.7e-18	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	927
AccII	CGCG	1 cut(s)	218
AciI	CCGC	4 cut(s)	57, 368, 498, 707
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	512, 632
AcuI	CTGAAG	2 cut(s)	434, 447
AfaI	GTAC	1 cut(s)	284
AfeI	AGCGCT	1 cut(s)	874
AfiI	CCNNNNNNNGG	1 cut(s)	927
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	581
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	604, 717
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AluBI	AGCT	8 cut(s)	41, 203, 271, 431, 584, 778, 854, 901
AluI	AGCT	8 cut(s)	41, 203, 271, 431, 584, 778, 854, 901
AlwNI	CAGNNNCTG	1 cut(s)	857
Ama87I	CYCGRG	1 cut(s)	434
Aor51HI	AGCGCT	1 cut(s)	874
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	6 cut(s)	41, 59, 500, 656, 851, 854
ApoI	RAATTY	2 cut(s)	512, 632
ArsI	GACNNNNNNTTYG	4 cut(s)	932, 936, 964, 968
AseI	ATTAAT	1 cut(s)	461
AspLEI	GCGC	2 cut(s)	220, 875
AspS9I	GGNCC	4 cut(s)	370, 521, 621, 918
AsuHPI	GGTGA	6 cut(s)	178, 568, 594, 650, 725, 896
AsuNHI	GCTAGC	1 cut(s)	659
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	4 cut(s)	370, 521, 621, 918
BalI	TGGCCA	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	422
BbvCI	CCTCAGC	1 cut(s)	199
BbvI	GCAGC	6 cut(s)	28, 46, 487, 643, 841, 863
BccI	CCATC	3 cut(s)	341, 691, 908
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	2 cut(s)	606, 719
BciVI	GTATCC	1 cut(s)	724
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	4 cut(s)	30, 573, 660, 867
BfoI	RGCGCY	1 cut(s)	876
BfuI	GTATCC	1 cut(s)	724
BisI	GCNGC	7 cut(s)	42, 60, 501, 657, 707, 852, 855
BlsI	GCNGC	7 cut(s)	43, 61, 502, 658, 708, 853, 856
Bme1390I	CCNGG	2 cut(s)	606, 719
Bme18I	GGWCC	4 cut(s)	370, 521, 621, 918
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	4 cut(s)	370, 521, 621, 918
BmiI	GGNNCC	1 cut(s)	919
BmrFI	CCNGG	2 cut(s)	606, 719
BmsI	GCATC	1 cut(s)	244
BmtI	GCTAGC	1 cut(s)	663
BpiI	GAAGAC	1 cut(s)	422
BpmI	CTGGAG	1 cut(s)	897
Bpu10I	CCTNAGC	2 cut(s)	199, 552
BsaJI	CCNNGG	2 cut(s)	605, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	927
Bse1I	ACTGG	1 cut(s)	670
Bse3DI	GCAATG	2 cut(s)	63, 754
BseBI	CCWGG	2 cut(s)	606, 719
BseDI	CCNNGG	2 cut(s)	605, 718
BseLI	CCNNNNNNNGG	1 cut(s)	927
BseMI	GCAATG	2 cut(s)	63, 754
BseMII	CTCAG	3 cut(s)	213, 566, 770
BseNI	ACTGG	1 cut(s)	670
BseRI	GAGGAG	2 cut(s)	79, 127
BseXI	GCAGC	6 cut(s)	28, 46, 487, 643, 841, 863
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	931
BslI	CCNNNNNNNGG	1 cut(s)	927
BsmFI	GGGAC	1 cut(s)	931
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	434
Bsp143I	GATC	1 cut(s)	790
BspACI	CCGC	4 cut(s)	57, 368, 498, 707
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	3 cut(s)	212, 565, 771
BspFNI	CGCG	1 cut(s)	218
BspHI	TCATGA	1 cut(s)	954
BspLI	GGNNCC	1 cut(s)	919
BspOI	GCTAGC	1 cut(s)	663
BsrDI	GCAATG	2 cut(s)	63, 754
BsrI	ACTGG	1 cut(s)	670
BssECI	CCNNGG	2 cut(s)	605, 718
BssMI	GATC	1 cut(s)	790
Bst2UI	CCWGG	2 cut(s)	606, 719
BstC8I	GCNNGC	1 cut(s)	661
BstDEI	CTNAG	4 cut(s)	11, 199, 552, 779
BstEII	GGTNACC	1 cut(s)	713
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	876
BstHHI	GCGC	2 cut(s)	220, 875
BstKTI	GATC	1 cut(s)	793
BstMBI	GATC	1 cut(s)	790
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 65, 506, 863, 872
BstNI	CCWGG	2 cut(s)	606, 719
BstNSI	RCATGY	1 cut(s)	303
BstPI	GGTNACC	1 cut(s)	713
BstSCI	CCNGG	2 cut(s)	604, 717
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	6 cut(s)	28, 46, 487, 643, 841, 863
BstV2I	GAAGAC	1 cut(s)	422
BsuI	GTATCC	1 cut(s)	724
BsuRI	GGCC	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	24, 663
Cac8I	GCNNGC	1 cut(s)	661
CaiI	CAGNNNCTG	1 cut(s)	857
CciI	TCATGA	1 cut(s)	954
CfoI	GCGC	2 cut(s)	220, 875
Cfr13I	GGNCC	4 cut(s)	370, 521, 621, 918
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	6 cut(s)	211, 286, 300, 421, 614, 955
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	4 cut(s)	11, 199, 552, 779
DpnI	GATC	1 cut(s)	792
DpnII	GATC	1 cut(s)	790
DraI	TTTAAA	1 cut(s)	517
EaeI	YGGCCR	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	383
Eco47I	GGWCC	4 cut(s)	370, 521, 621, 918
Eco47III	AGCGCT	1 cut(s)	874
Eco57I	CTGAAG	2 cut(s)	434, 447
Eco88I	CYCGRG	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	713
EcoO65I	GGTNACC	1 cut(s)	713
EcoRII	CCWGG	2 cut(s)	604, 717
FaeI	CATG	6 cut(s)	214, 289, 303, 424, 617, 958
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	1 cut(s)	931
FatI	CATG	6 cut(s)	210, 285, 299, 420, 613, 954
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	7 cut(s)	42, 60, 501, 657, 707, 852, 855
Fsp4HI	GCNGC	7 cut(s)	42, 60, 501, 657, 707, 852, 855
FspBI	CTAG	4 cut(s)	30, 573, 660, 867
GlaI	GCGC	2 cut(s)	219, 874
GluI	GCNGC	7 cut(s)	42, 60, 501, 657, 707, 852, 855
GsuI	CTGGAG	1 cut(s)	897
HaeII	RGCGCY	1 cut(s)	876
HaeIII	GGCC	1 cut(s)	23
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	2 cut(s)	220, 875
Hin1II	CATG	6 cut(s)	214, 289, 303, 424, 617, 958
Hin6I	GCGC	2 cut(s)	218, 873
HinP1I	GCGC	2 cut(s)	218, 873
HindIII	AAGCTT	1 cut(s)	899
HinfI	GANTC	5 cut(s)	105, 394, 475, 839, 932
HphI	GGTGA	6 cut(s)	178, 568, 594, 650, 725, 896
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	6 cut(s)	12, 104, 229, 414, 790, 838
Hpy188III	TCNNGA	5 cut(s)	325, 434, 479, 524, 955
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	3 cut(s)	151, 157, 763
HpyCH4V	TGCA	2 cut(s)	404, 906
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 65, 506, 863, 872
HpyF3I	CTNAG	4 cut(s)	11, 199, 552, 779
Hsp92II	CATG	6 cut(s)	214, 289, 303, 424, 617, 958
HspAI	GCGC	2 cut(s)	218, 873
Kzo9I	GATC	1 cut(s)	790
Lsp1109I	GCAGC	6 cut(s)	28, 46, 487, 643, 841, 863
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	4 cut(s)	30, 573, 660, 867
MaeIII	GTNAC	3 cut(s)	333, 713, 938
MalI	GATC	1 cut(s)	792
MboI	GATC	1 cut(s)	790
MboII	GAAGA	7 cut(s)	66, 69, 72, 75, 427, 494, 748
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	4 cut(s)	462, 512, 576, 632
MluNI	TGGCCA	1 cut(s)	23
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	8 cut(s)	315, 354, 461, 516, 627, 644, 678, 967
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	3 cut(s)	59, 500, 854
MspR9I	CCNGG	2 cut(s)	606, 719
MvaI	CCWGG	2 cut(s)	606, 719
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	5 cut(s)	41, 65, 506, 863, 872
NdeII	GATC	1 cut(s)	790
NheI	GCTAGC	1 cut(s)	659
NlaIII	CATG	6 cut(s)	214, 289, 303, 424, 617, 958
NlaIV	GGNNCC	1 cut(s)	919
NmuCI	GTSAC	2 cut(s)	713, 938
NspI	RCATGY	1 cut(s)	303
PaeR7I	CTCGAG	1 cut(s)	434
PagI	TCATGA	1 cut(s)	954
PciI	ACATGT	1 cut(s)	299
PfeI	GAWTC	5 cut(s)	105, 394, 475, 839, 932
PflFI	GACNNNGTC	1 cut(s)	950
PflMI	CCANNNNNTGG	1 cut(s)	927
PkrI	GCNGC	7 cut(s)	43, 61, 502, 658, 708, 853, 856
PscI	ACATGT	1 cut(s)	299
PshBI	ATTAAT	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	604, 717
PspEI	GGTNACC	1 cut(s)	713
PspGI	CCWGG	2 cut(s)	604, 717
PspN4I	GGNNCC	1 cut(s)	919
PspPI	GGNCC	4 cut(s)	370, 521, 621, 918
PsrI	GAACNNNNNNTAC	2 cut(s)	715, 747
PstNI	CAGNNNCTG	1 cut(s)	857
PsyI	GACNNNGTC	1 cut(s)	950
PvuII	CAGCTG	1 cut(s)	854
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SaqAI	TTAA	8 cut(s)	315, 354, 461, 516, 627, 644, 678, 967
SatI	GCNGC	7 cut(s)	42, 60, 501, 657, 707, 852, 855
Sau3AI	GATC	1 cut(s)	790
Sau96I	GGNCC	4 cut(s)	370, 521, 621, 918
ScrFI	CCNGG	2 cut(s)	606, 719
SfaNI	GCATC	1 cut(s)	244
Sfr274I	CTCGAG	1 cut(s)	434
SinI	GGWCC	4 cut(s)	370, 521, 621, 918
SlaI	CTCGAG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	4 cut(s)	462, 512, 576, 632
SsiI	CCGC	4 cut(s)	57, 368, 498, 707
SspMI	CTAG	4 cut(s)	30, 573, 660, 867
StyD4I	CCNGG	2 cut(s)	604, 717
TaqI	TCGA	4 cut(s)	375, 435, 448, 544
TasI	AATT	4 cut(s)	462, 512, 576, 632
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	709
TfiI	GAWTC	5 cut(s)	105, 394, 475, 839, 932
Tru1I	TTAA	8 cut(s)	315, 354, 461, 516, 627, 644, 678, 967
Tru9I	TTAA	8 cut(s)	315, 354, 461, 516, 627, 644, 678, 967
TscAI	CASTG	2 cut(s)	24, 670
TseFI	GTSAC	2 cut(s)	713, 938
TseI	GCWGC	6 cut(s)	41, 59, 500, 656, 851, 854
Tsp45I	GTSAC	2 cut(s)	713, 938
TspDTI	ATGAA	1 cut(s)	645
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	2 cut(s)	24, 670
Tth111I	GACNNNGTC	1 cut(s)	950
Van91I	CCANNNNNTGG	1 cut(s)	927
VpaK11BI	GGWCC	4 cut(s)	370, 521, 621, 918
VspI	ATTAAT	1 cut(s)	461
XapI	RAATTY	2 cut(s)	512, 632
XceI	RCATGY	1 cut(s)	303
XhoI	CTCGAG	1 cut(s)	434
XspI	CTAG	4 cut(s)	30, 573, 660, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.