RLG00000034749

ribosome biogenesis protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
53649419 .. 53659965
10547 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034749

Sequence Viewer

Length: 3642 bp
ATGGGCATGATAGATAGTGGAAGTATGGAGCAGTCGCACAAGGCACACAGGTCCCGGCAGTCGGGTTCCAAGGCCGATAAGAAGGAGAAGCAAAACCAAAAAGATTCGAAGAAGCAAAACCCCAAGGCATTCGCTTTCAGCTCAACTGTCAAAGCCAAGCGTCTCCAGTCTCGTGCCGTCGAGAAAGAGCAGCGAAGACTTCATGTTCCGACCATTGATCGCTCCTACGGCGAACAGCCTCCTTTTGTTGTTCTTGTTCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGGAGGTGAAAGGCCCCATTACCATTGTATCAGGGAAGCAGAGGCGGGTTCAGTTTGTGGAGTGCCCCAATGATATCAATGGTATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTTCTTATAGATGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCAAAGATGCAAAGAAACTGAGGAAAACAAAGCAGCATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATGTCACTCCCCCTGAAAAAGTGCGCTTGAATAATAAATGTGATAGAAATGTCACACTTTATGGTTATTTGCGGGGGTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGCGATTACAGTGTCGCTGGTATGACAGGCTTAGCTGATCCCTGTCCTTTACCCTCTGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCTATGTCGGGACTTGGGGATCTCCTGTATGACAAAGATGCTGTCTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAGGATGAAAAGGAGGAAGCAACGAACAAAGGAGAGCTTGAGGATGTGGGTGCGACCATGGTTAAAAGTCTTCAAAACCCAAAATATTCACTTGATGAAAAGTTGGAGCAGAGCTTCATTAACTTTTATATCCAGAAACCTAAATGGGAATCTCAACATGATGAAAAAGATCTTGATGAATCCAGAAAACGCATTCGTATGATAGAGCCTTTAGAGGAACATCAGTTTGGGAAAACAATGAAAGCTGGGGGTTCTGGTCAAGAAAGTAATGTTGAGGATATTGATGGCTCAGAATCAAAATCTTGTCAGAATGATGCTGCTCGTAATGTTGCACTAACAAAAAGTGATTCTAGTGGATCTGATAGAGAAAATGGTGATGTATCAGATAACATTAAAGATCACTTGAAGGAACATGTTGAGTTTCATGATGGAAGGTCAAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGAGGAGTCAGAAGATGATGACGACGGTGGCGATAATGATGCAGATAATCGTACCTCTTCTGGTTCAGAGTCTTCAGAGGAAGATAGAGAAATCGATGAGACAGATGATGATGTGGGAAACATAGCAAAGTGGAAGGAGTCTTTGGCAGAACGGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCATCGGTTTCAACTAAAGCCAATGAAGAACAAGACAGTAGTGAGGAGGAAAGTGATGGAGATGACTTTTTTAAGCCAAAAGGAGACGGAATTAAGAAACATAGAGTAGAAGCTGAAAATTGGAATGTTGAGGATTCTTCCAAATTTACAAATCATTCAATCAAGGACTGGAATGATAAAAAGCTTATAGAGAGTGTGCGCGATCGCTTTGTCACTGGTGATTGGTCGAAGGCTGCTAAAAGAAATCAAGACACGGAGGCGACATTTGAAGATGAAGATGCTGTCTTTGGTGACTTCGAAGATTTAGAAACGGGTGAGAAGCATGATGGATATCATACAAATGAGACGAGAAAAGTTGCAAACAACAAGAAAGCTGGCTTAGATGAAGAGGAGCGGAGGCTCAAAAAGCTTGCTCGTCGTGCCAAGTTTGATGCTCAATATCCTTTTGACACCAAAGGTTTCTTGTATGAGGAGGAACCTGATGATACACATGTAAGCCAGTTTGGACGAGATCGAGCTAAAGAAAGCGGCTATGTTGACAAGCTGAAGGAGGAGATTGAACTCCGGAAACAAATGAATATAGCCGAACTCAATGACCTTGATGAGGACACCCGATTAGAGGTTGGGGGTTTCCGGACAGGGACTTACCTTCGGTTGGAAGTTCATGATGTTCCTTATGAGATGGTTGAATATTTTGATCCCTGCCAGCCTGTTTTGGTTGGAGGAATCGGTCTTGGGGAAGAAAGCACTGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTGCTAAAGACCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCTGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTATACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCCAATACTGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGCAACATTTAGGATCACTGCCACGGCAGTTGTGCTTGAGTTCAACCATGCATCGCGAATAGTGAAGAAACTCAAACTAGTTGGTTACCCTTGCAAGATATTCAAGAATACAGCACTTATAAAAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCTGTTCGAACAGTCAGTGGCATCCGGGGGCAGGTGAAAAAGGCTGCAAAAGAAGAAATTGGTAACCAACCGAAAAAGAAGGGTGGACAACCAAAAGAAGGAATTGTTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTGTTTTTGCGCGCTTGGACTCAAGTTGATGTTCCTTGCTTTTACAACCCATTAACCACATCTCTGCAACCCCGCGCTCTGACCTGGCGAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGAACGCAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCAATTGAAAGGAAGCAGAGGAAGTTCAACCCACTGGTGATTCCCAAAGCAGTACAAGCAAGTCTTCCATTTAAATCAAAGCCTAAGGATACACCGAATAGAAGAAAGCAACTTCTTGAGGATAGAAGAGCTGTTGTGAGGGAGCCTCATGAACAGAAAATTCATGCTCTGCTTCAAAATCTTCGGTTAATCAAATCTGAGAAGTTAAAGAAGCGCAAGATGAAGGATGAGAAAAAAAGAAAAGAAATTGAAGCACAGAAAGCCAAAGATGAGCAGTTGACAAGAAAGCGCCAGAGAGAAGAACGACGAGAGAGATACCGGGTGCAAGACAAAGCTCAGAAGAAAATGAGGAGACACGCGGAGGACTGA

Protein Analysis

1214

Amino Acids

139.55

Weight (kDa)

8.84

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AARP2CN PF08142 242 - 315 3.1e-26 AARP2CN (NUC121) domain
RIBIOP_C PF04950 766 - 1046 1.8e-83 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2912
AarI CACCTGC 2 cut(s) 887, 2983
Acc36I ACCTGC 2 cut(s) 887, 2983
AccBSI CCGCTC 1 cut(s) 2185
AccI GTMKAC 1 cut(s) 2696
AccII CGCG 5 cut(s) 1992, 2848, 3120, 3183, 3632
AccIII TCCGGA 2 cut(s) 2355, 2424
AciI CCGC 8 cut(s) 376, 426, 856, 2185, 2319, 2566, 3181, 3632
AclWI GGATC 5 cut(s) 935, 1035, 1456, 2483, 2813
AcsI RAATTY 4 cut(s) 431, 1934, 2776, 3432
AcuI CTGAAG 2 cut(s) 1644, 2357
AfaI GTAC 2 cut(s) 1639, 3327
AflII CTTAAG 1 cut(s) 2690
AflIII ACRYGT 2 cut(s) 1504, 2281
AhlI ACTAGT 1 cut(s) 2869
AjnI CCWGG 3 cut(s) 1092, 2555, 3191
AjuI GAANNNNNNNTTGG 4 cut(s) 1302, 1334, 1712, 1744
AloI GAACNNNNNNTCC 2 cut(s) 739, 771
Alw21I GWGCWC 1 cut(s) 3077
Alw26I GTCTC 7 cut(s) 167, 174, 1679, 1744, 1869, 2129, 3619
Alw44I GTGCAC 1 cut(s) 3073
AlwI GGATC 5 cut(s) 935, 1035, 1456, 2483, 2813
Aor13HI TCCGGA 2 cut(s) 2355, 2424
AoxI GGCC 4 cut(s) 72, 343, 2553, 2734
ApaI GGGCCC 1 cut(s) 2738
ApaLI GTGCAC 1 cut(s) 3073
ApeKI GCWGC 7 cut(s) 190, 595, 962, 979, 1409, 2024, 3005
ApoI RAATTY 4 cut(s) 431, 1934, 2776, 3432
ArsI GACNNNNNNTTYG 2 cut(s) 1035, 1067
AsiSI GCGATCGC 1 cut(s) 1996
AspLEI GCGC 7 cut(s) 810, 1992, 3120, 3122, 3185, 3489, 3564
AspS9I GGNCC 5 cut(s) 51, 263, 344, 2734, 2735
AsuC2I CCSGG 3 cut(s) 55, 2987, 3593
AsuHPI GGTGA 8 cut(s) 349, 542, 1478, 2021, 2093, 2117, 3007, 3322
AsuII TTCGAA 3 cut(s) 107, 2088, 2968
AvaII GGWCC 2 cut(s) 51, 263
AxyI CCTNAGG 1 cut(s) 3357
BaeGI GKGCMC 3 cut(s) 398, 2738, 3077
BaeI ACNNNNGTAYC 4 cut(s) 342, 375, 2268, 2301
BanII GRGCYC 1 cut(s) 2738
BauI CACGAG 1 cut(s) 171
BbsI GAAGAC 4 cut(s) 202, 1154, 1650, 3329
Bbv12I GWGCWC 1 cut(s) 3077
BbvI GCAGC 7 cut(s) 202, 607, 949, 966, 1396, 2011, 2992
BceAI ACGGC 3 cut(s) 161, 244, 2832
BcgI CGANNNNNNTGC 4 cut(s) 996, 1030, 1607, 1641
BciT130I CCWGG 3 cut(s) 1094, 2557, 3193
BciVI GTATCC 2 cut(s) 2537, 3355
BclI TGATCA 2 cut(s) 291, 1069
BcnI CCSGG 3 cut(s) 55, 2987, 3593
BcoDI GTCTC 7 cut(s) 167, 174, 1679, 1744, 1869, 2129, 3619
BcuI ACTAGT 1 cut(s) 2869
BfaI CTAG 3 cut(s) 767, 1443, 2870
BfmI CTRYAG 1 cut(s) 3210
BfoI RGCGCY 1 cut(s) 3565
BfrI CTTAAG 1 cut(s) 2690
BfuAI ACCTGC 2 cut(s) 887, 2983
BfuI GTATCC 2 cut(s) 2537, 3355
BglII AGATCT 2 cut(s) 1261, 2932
BlpI GCTNAGC 1 cut(s) 934
Bme1390I CCNGG 6 cut(s) 55, 1094, 2557, 2987, 3193, 3593
Bme18I GGWCC 2 cut(s) 51, 263
BmgT120I GGNCC 5 cut(s) 51, 263, 344, 2734, 2735
BmiI GGNNCC 7 cut(s) 53, 67, 346, 2268, 2735, 2736, 3417
BmrFI CCNGG 6 cut(s) 55, 1094, 2557, 2987, 3193, 3593
BpiI GAAGAC 4 cut(s) 202, 1154, 1650, 3329
BplI GAGNNNNNCTC 4 cut(s) 736, 768, 3403, 3435
BpmI CTGGAG 2 cut(s) 149, 2685
Bpu1102I GCTNAGC 1 cut(s) 934
Bpu14I TTCGAA 3 cut(s) 107, 2088, 2968
BpuEI CTTGAG 4 cut(s) 1151, 2849, 3114, 3410
BpuMI CCSGG 3 cut(s) 55, 2987, 3593
Bsa29I ATCGAT 1 cut(s) 1680
BsaBI GATNNNNATC 1 cut(s) 2121
BsaJI CCNNGG 7 cut(s) 69, 123, 270, 517, 1149, 2814, 2986
BsaWI WCCGGW 2 cut(s) 2355, 2424
Bse1I ACTGG 8 cut(s) 166, 1964, 2011, 2290, 2545, 2598, 2761, 3312
Bse21I CCTNAGG 1 cut(s) 3357
Bse3DI GCAATG 4 cut(s) 446, 2677, 2713, 2730
Bse8I GATNNNNATC 1 cut(s) 2121
BseAI TCCGGA 2 cut(s) 2355, 2424
BseBI CCWGG 3 cut(s) 1094, 2557, 3193
BseCI ATCGAT 1 cut(s) 1680
BseDI CCNNGG 7 cut(s) 69, 123, 270, 517, 1149, 2814, 2986
BseGI GGATG 7 cut(s) 730, 754, 1102, 1141, 2982, 3207, 3505
BseJI GATNNNNATC 1 cut(s) 2121
BseMI GCAATG 4 cut(s) 446, 2677, 2713, 2730
BseMII CTCAG 6 cut(s) 572, 1395, 2943, 3207, 3462, 3623
BseNI ACTGG 8 cut(s) 166, 1964, 2011, 2290, 2545, 2598, 2761, 3312
BsePI GCGCGC 1 cut(s) 3118
BseRI GAGGAG 7 cut(s) 1604, 1850, 2195, 2276, 2357, 3238, 3637
BseSI GKGCMC 3 cut(s) 398, 2738, 3077
BseXI GCAGC 7 cut(s) 202, 607, 949, 966, 1396, 2011, 2992
BseYI CCCAGC 1 cut(s) 1337
Bsh1236I CGCG 5 cut(s) 1992, 2848, 3120, 3183, 3632
Bsh1285I CGRYCG 1 cut(s) 1996
BshFI GGCC 4 cut(s) 74, 345, 2555, 2736
BshVI ATCGAT 1 cut(s) 1680
BsiEI CGRYCG 1 cut(s) 1996
BsiHKAI GWGCWC 1 cut(s) 3077
BsiSI CCGG 5 cut(s) 55, 2356, 2425, 2986, 3592
BslFI GGGAC 4 cut(s) 37, 283, 1032, 2446
BsmAI GTCTC 7 cut(s) 167, 174, 1679, 1744, 1869, 2129, 3619
BsmBI CGTCTC 3 cut(s) 167, 1869, 2129
BsmFI GGGAC 4 cut(s) 37, 283, 1032, 2446
BsmI GAATGC 2 cut(s) 128, 1284
BsnI GGCC 4 cut(s) 74, 345, 2555, 2736
Bsp119I TTCGAA 3 cut(s) 107, 2088, 2968
Bsp120I GGGCCC 1 cut(s) 2734
Bsp1286I GDGCHC 3 cut(s) 398, 2738, 3077
Bsp13I TCCGGA 2 cut(s) 2355, 2424
Bsp1720I GCTNAGC 1 cut(s) 934
Bsp19I CCATGG 2 cut(s) 517, 1149
Bsp68I TCGCGA 1 cut(s) 2848
BspACI CCGC 8 cut(s) 376, 426, 856, 2185, 2319, 2566, 3181, 3632
BspANI GGCC 4 cut(s) 74, 345, 2555, 2736
BspCNI CTCAG 6 cut(s) 573, 1394, 2942, 3208, 3463, 3622
BspDI ATCGAT 1 cut(s) 1680
BspEI TCCGGA 2 cut(s) 2355, 2424
BspFNI CGCG 5 cut(s) 1992, 2848, 3120, 3183, 3632
BspHI TCATGA 4 cut(s) 667, 1516, 2455, 3421
BspLI GGNNCC 7 cut(s) 53, 67, 346, 2268, 2735, 2736, 3417
BspMI ACCTGC 2 cut(s) 887, 2983
BspPI GGATC 5 cut(s) 935, 1035, 1456, 2483, 2813
BspQI GCTCTTC 1 cut(s) 3394
BspT104I TTCGAA 3 cut(s) 107, 2088, 2968
BspTI CTTAAG 1 cut(s) 2690
BsrBI CCGCTC 1 cut(s) 2185
BsrDI GCAATG 4 cut(s) 446, 2677, 2713, 2730
BsrI ACTGG 8 cut(s) 166, 1964, 2011, 2290, 2545, 2598, 2761, 3312
BssECI CCNNGG 7 cut(s) 69, 123, 270, 517, 1149, 2814, 2986
BssHII GCGCGC 1 cut(s) 3118
BssNAI GTATAC 1 cut(s) 2697
BssSI CACGAG 1 cut(s) 171
BssT1I CCWWGG 5 cut(s) 69, 123, 270, 517, 1149
Bst1107I GTATAC 1 cut(s) 2697
Bst2BI CACGAG 1 cut(s) 171
Bst2UI CCWGG 3 cut(s) 1094, 2557, 3193
Bst4CI ACNGT 6 cut(s) 148, 914, 1613, 1829, 2974, 3211
Bst6I CTCTTC 4 cut(s) 1581, 1648, 2172, 3394
BstAFI CTTAAG 1 cut(s) 2690
BstAPI GCANNNNNTGC 2 cut(s) 434, 2686
BstBI TTCGAA 3 cut(s) 107, 2088, 2968
BstC8I GCNNGC 6 cut(s) 2167, 2202, 2498, 2553, 2687, 3120
BstDEI CTNAG 9 cut(s) 581, 934, 1381, 2170, 2929, 3216, 3357, 3471, 3609
BstDSI CCRYGG 3 cut(s) 517, 1149, 2814
BstEII GGTNACC 2 cut(s) 2876, 3023
BstENI CCTNNNNNAGG 1 cut(s) 2393
BstF5I GGATG 7 cut(s) 730, 754, 1102, 1141, 2982, 3207, 3505
BstFNI CGCG 5 cut(s) 1992, 2848, 3120, 3183, 3632
BstH2I RGCGCY 1 cut(s) 3565
BstHHI GCGC 7 cut(s) 810, 1992, 3120, 3122, 3185, 3489, 3564
BstMAI GTCTC 7 cut(s) 167, 174, 1679, 1744, 1869, 2129, 3619
BstMCI CGRYCG 1 cut(s) 1996
BstMWI GCNNNNNNNGC 9 cut(s) 228, 434, 443, 2197, 2210, 2575, 2686, 3329, 3533
BstNI CCWGG 3 cut(s) 1094, 2557, 3193
BstNSI RCATGY 5 cut(s) 1508, 2285, 2551, 2689, 2713
BstPI GGTNACC 2 cut(s) 2876, 3023
BstSCI CCNGG 6 cut(s) 53, 1092, 2555, 2985, 3191, 3591
BstSFI CTRYAG 1 cut(s) 3210
BstSLI GKGCMC 3 cut(s) 398, 2738, 3077
BstUI CGCG 5 cut(s) 1992, 2848, 3120, 3183, 3632
BstV1I GCAGC 7 cut(s) 202, 607, 949, 966, 1396, 2011, 2992
BstV2I GAAGAC 4 cut(s) 202, 1154, 1650, 3329
BstX2I RGATCY 4 cut(s) 1027, 1261, 1448, 2932
BstYI RGATCY 4 cut(s) 1027, 1261, 1448, 2932
BstZ17I GTATAC 1 cut(s) 2697
Bsu15I ATCGAT 1 cut(s) 1680
Bsu36I CCTNAGG 1 cut(s) 3357
BsuI GTATCC 2 cut(s) 2537, 3355
BsuRI GGCC 4 cut(s) 74, 345, 2555, 2736
BsuTUI ATCGAT 1 cut(s) 1680
BtgI CCRYGG 3 cut(s) 517, 1149, 2814
BtgZI GCGATG 2 cut(s) 2666, 2829
BtsCI GGATG 7 cut(s) 730, 754, 1102, 1141, 2982, 3207, 3505
BtsI GCAGTG 1 cut(s) 2808
BtsIMutI CAGTG 7 cut(s) 919, 2004, 2538, 2605, 2808, 2983, 3305
BtuMI TCGCGA 1 cut(s) 2848
BveI ACCTGC 2 cut(s) 887, 2983
Cac8I GCNNGC 6 cut(s) 2167, 2202, 2498, 2553, 2687, 3120
CciI TCATGA 4 cut(s) 667, 1516, 2455, 3421
CfoI GCGC 7 cut(s) 810, 1992, 3120, 3122, 3185, 3489, 3564
Cfr13I GGNCC 5 cut(s) 51, 263, 344, 2734, 2735
ClaI ATCGAT 1 cut(s) 1680
CseI GACGC 1 cut(s) 149
Csp6I GTAC 2 cut(s) 1638, 3326
CspCI CAANNNNNGTGG 2 cut(s) 2803, 2838
CviQI GTAC 2 cut(s) 1638, 3326
DdeI CTNAG 9 cut(s) 581, 934, 1381, 2170, 2929, 3216, 3357, 3471, 3609
DraI TTTAAA 2 cut(s) 603, 3346
Eam1104I CTCTTC 4 cut(s) 1581, 1648, 2172, 3394
EarI CTCTTC 4 cut(s) 1581, 1648, 2172, 3394
Eco130I CCWWGG 5 cut(s) 69, 123, 270, 517, 1149
Eco24I GRGCYC 1 cut(s) 2738
Eco32I GATATC 2 cut(s) 406, 2123
Eco47I GGWCC 2 cut(s) 51, 263
Eco57I CTGAAG 2 cut(s) 1644, 2357
Eco81I CCTNAGG 1 cut(s) 3357
Eco91I GGTNACC 2 cut(s) 2876, 3023
EcoNI CCTNNNNNAGG 1 cut(s) 2393
EcoO109I RGGNCCY 4 cut(s) 51, 344, 2734, 2735
EcoO65I GGTNACC 2 cut(s) 2876, 3023
EcoRII CCWGG 3 cut(s) 1092, 2555, 3191
EcoRV GATATC 2 cut(s) 406, 2123
EcoT14I CCWWGG 5 cut(s) 69, 123, 270, 517, 1149
EcoT22I ATGCAT 2 cut(s) 2715, 2845
EcoT38I GRGCYC 1 cut(s) 2738
ErhI CCWWGG 5 cut(s) 69, 123, 270, 517, 1149
Esp3I CGTCTC 3 cut(s) 167, 1869, 2129
FalI AAGNNNNNCTT 4 cut(s) 1113, 1145, 3321, 3353
FaqI GGGAC 4 cut(s) 37, 283, 1032, 2446
FauI CCCGC 3 cut(s) 369, 849, 3188
FbaI TGATCA 2 cut(s) 291, 1069
FblI GTMKAC 1 cut(s) 2696
FokI GGATG 7 cut(s) 717, 741, 1109, 1148, 2969, 3214, 3512
FriOI GRGCYC 1 cut(s) 2738
FspBI CTAG 3 cut(s) 767, 1443, 2870
GlaI GCGC 7 cut(s) 809, 1991, 3119, 3121, 3184, 3488, 3563
GsaI CCCAGC 1 cut(s) 1341
GsuI CTGGAG 2 cut(s) 149, 2685
HaeII RGCGCY 1 cut(s) 3565
HaeIII GGCC 4 cut(s) 74, 345, 2555, 2736
HapII CCGG 5 cut(s) 55, 2356, 2425, 2986, 3592
HgaI GACGC 1 cut(s) 149
HhaI GCGC 7 cut(s) 810, 1992, 3120, 3122, 3185, 3489, 3564
Hin6I GCGC 7 cut(s) 808, 1990, 3118, 3120, 3183, 3487, 3562
HinP1I GCGC 7 cut(s) 808, 1990, 3118, 3120, 3183, 3487, 3562
HincII GTYRAC 3 cut(s) 2329, 3253, 3552
HindII GTYRAC 3 cut(s) 2329, 3253, 3552
HindIII AAGCTT 2 cut(s) 1973, 2198
HpaI GTTAAC 1 cut(s) 3253
HpaII CCGG 5 cut(s) 55, 2356, 2425, 2986, 3592
HphI GGTGA 8 cut(s) 349, 542, 1478, 2021, 2093, 2117, 3007, 3322
Hpy166II GTNNAC 7 cut(s) 2329, 2697, 2925, 3047, 3075, 3253, 3552
Hpy8I GTNNAC 7 cut(s) 2329, 2697, 2925, 3047, 3075, 3253, 3552
Hpy99I CGWCG 4 cut(s) 182, 1613, 2211, 3582
HpyCH4III ACNGT 6 cut(s) 148, 914, 1613, 1829, 2974, 3211
HpyCH4IV ACGT 1 cut(s) 685
HpyF10VI GCNNNNNNNGC 9 cut(s) 228, 434, 443, 2197, 2210, 2575, 2686, 3329, 3533
HpyF3I CTNAG 9 cut(s) 581, 934, 1381, 2170, 2929, 3216, 3357, 3471, 3609
HpySE526I ACGT 1 cut(s) 685
HspAI GCGC 7 cut(s) 808, 1990, 3118, 3120, 3183, 3487, 3562
Kpn2I TCCGGA 2 cut(s) 2355, 2424
Ksp22I TGATCA 2 cut(s) 291, 1069
KspAI GTTAAC 1 cut(s) 3253
LguI GCTCTTC 1 cut(s) 3394
LmnI GCTCC 6 cut(s) 28, 227, 635, 1198, 2182, 3415
Lsp1109I GCAGC 7 cut(s) 202, 607, 949, 966, 1396, 2011, 2992
MaeI CTAG 3 cut(s) 767, 1443, 2870
MaeII ACGT 1 cut(s) 685
MbiI CCGCTC 1 cut(s) 2185
MfeI CAATTG 1 cut(s) 3276
MflI RGATCY 4 cut(s) 1027, 1261, 1448, 2932
MhlI GDGCHC 3 cut(s) 398, 2738, 3077
MlyI GAGTC 4 cut(s) 1601, 1664, 1733, 3121
MmeI TCCRAC 4 cut(s) 233, 1176, 2427, 2491
Mph1103I ATGCAT 2 cut(s) 2715, 2845
MroI TCCGGA 2 cut(s) 2355, 2424
MslI CAYNNNNRTG 3 cut(s) 759, 1289, 2130
MspCI CTTAAG 1 cut(s) 2690
MspI CCGG 5 cut(s) 55, 2356, 2425, 2986, 3592
MspR9I CCNGG 6 cut(s) 55, 1094, 2557, 2987, 3193, 3593
MunI CAATTG 1 cut(s) 3276
Mva1269I GAATGC 2 cut(s) 128, 1284
MvaI CCWGG 3 cut(s) 1094, 2557, 3193
MvnI CGCG 5 cut(s) 1992, 2848, 3120, 3183, 3632
MwoI GCNNNNNNNGC 9 cut(s) 228, 434, 443, 2197, 2210, 2575, 2686, 3329, 3533
NciI CCSGG 3 cut(s) 55, 2987, 3593
NcoI CCATGG 2 cut(s) 517, 1149
NlaIV GGNNCC 7 cut(s) 53, 67, 346, 2268, 2735, 2736, 3417
NmuCI GTSAC 6 cut(s) 787, 835, 2002, 2081, 2600, 3101
NruI TCGCGA 1 cut(s) 2848
NsiI ATGCAT 2 cut(s) 2715, 2845
NspI RCATGY 5 cut(s) 1508, 2285, 2551, 2689, 2713
NspV TTCGAA 3 cut(s) 107, 2088, 2968
PaeI GCATGC 1 cut(s) 2689
PagI TCATGA 4 cut(s) 667, 1516, 2455, 3421
PaqCI CACCTGC 2 cut(s) 887, 2983
PauI GCGCGC 1 cut(s) 3118
PciI ACATGT 2 cut(s) 1504, 2281
PciSI GCTCTTC 1 cut(s) 3394
PcsI WCGNNNNNNNCGW 1 cut(s) 1614
PctI GAATGC 2 cut(s) 128, 1284
Ple19I CGATCG 1 cut(s) 1996
PleI GAGTC 4 cut(s) 1600, 1663, 1732, 3121
PpsI GAGTC 4 cut(s) 1600, 1663, 1732, 3121
PpuMI RGGWCCY 1 cut(s) 51
PscI ACATGT 2 cut(s) 1504, 2281
PsiI TTATAA 1 cut(s) 2912
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 1092, 2555, 3191
PspEI GGTNACC 2 cut(s) 2876, 3023
PspFI CCCAGC 1 cut(s) 1337
PspGI CCWGG 3 cut(s) 1092, 2555, 3191
PspN4I GGNNCC 7 cut(s) 53, 67, 346, 2268, 2735, 2736, 3417
PspOMI GGGCCC 1 cut(s) 2734
PspPI GGNCC 5 cut(s) 51, 263, 344, 2734, 2735
PspPPI RGGWCCY 1 cut(s) 51
PsuI RGATCY 4 cut(s) 1027, 1261, 1448, 2932
PteI GCGCGC 1 cut(s) 3118
PvuI CGATCG 1 cut(s) 1996
RgaI GCGATCGC 1 cut(s) 1996
RruI TCGCGA 1 cut(s) 2848
RsaI GTAC 2 cut(s) 1639, 3327
RsaNI GTAC 2 cut(s) 1638, 3326
RseI CAYNNNNRTG 3 cut(s) 759, 1289, 2130
SapI GCTCTTC 1 cut(s) 3394
Sau96I GGNCC 5 cut(s) 51, 263, 344, 2734, 2735
SchI GAGTC 4 cut(s) 1601, 1664, 1733, 3121
ScrFI CCNGG 6 cut(s) 55, 1094, 2557, 2987, 3193, 3593
SduI GDGCHC 3 cut(s) 398, 2738, 3077
SfaAI GCGATCGC 1 cut(s) 1996
SfcI CTRYAG 1 cut(s) 3210
SfuI TTCGAA 3 cut(s) 107, 2088, 2968
SgfI GCGATCGC 1 cut(s) 1996
SinI GGWCC 2 cut(s) 51, 263
SmiI ATTTAAAT 1 cut(s) 3346
SmiMI CAYNNNNRTG 3 cut(s) 759, 1289, 2130
SmlI CTYRAG 5 cut(s) 1130, 2690, 2828, 3129, 3389
SmoI CTYRAG 5 cut(s) 1130, 2690, 2828, 3129, 3389
SpeI ACTAGT 1 cut(s) 2869
SphI GCATGC 1 cut(s) 2689
SsiI CCGC 8 cut(s) 376, 426, 856, 2185, 2319, 2566, 3181, 3632
SspI AATATT 3 cut(s) 1178, 2483, 3238
SspMI CTAG 3 cut(s) 767, 1443, 2870
StyD4I CCNGG 6 cut(s) 53, 1092, 2555, 2985, 3191, 3591
StyI CCWWGG 5 cut(s) 69, 123, 270, 517, 1149
SwaI ATTTAAAT 1 cut(s) 3346
TaaI ACNGT 6 cut(s) 148, 914, 1613, 1829, 2974, 3211
TaiI ACGT 1 cut(s) 688
TaqI TCGA 9 cut(s) 107, 180, 1680, 1748, 2018, 2088, 2305, 2947, 2968
TaqII GACCGA 1 cut(s) 2510
TatI WGTACW 1 cut(s) 3325
TauI GCSGC 3 cut(s) 428, 2322, 2569
TscAI CASTG 7 cut(s) 919, 2011, 2545, 2605, 2815, 2983, 3312
TseFI GTSAC 6 cut(s) 787, 835, 2002, 2081, 2600, 3101
TseI GCWGC 7 cut(s) 190, 595, 962, 979, 1409, 2024, 3005
Tsp45I GTSAC 6 cut(s) 787, 835, 2002, 2081, 2600, 3101
TspGWI ACGGA 3 cut(s) 1753, 1893, 2060
TspRI CASTG 7 cut(s) 919, 2011, 2545, 2605, 2815, 2983, 3312
Vha464I CTTAAG 1 cut(s) 2690
VneI GTGCAC 1 cut(s) 3073
VpaK11BI GGWCC 2 cut(s) 51, 263
XagI CCTNNNNNAGG 1 cut(s) 2393
XapI RAATTY 4 cut(s) 431, 1934, 2776, 3432
XceI RCATGY 5 cut(s) 1508, 2285, 2551, 2689, 2713
XcmI CCANNNNNNNNNTGG 1 cut(s) 2758
XmiI GTMKAC 1 cut(s) 2696
XspI CTAG 3 cut(s) 767, 1443, 2870
Zsp2I ATGCAT 2 cut(s) 2715, 2845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.