Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

15139384 .. 15139932

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0181200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGATTCTGGAATGGGCGAAGCTGTAACCCAAACCCCAGTAGGCTTATTTTTGGGCCGCAGGTATCGGCCCGCTGTGCTAGGTCCACTAAAGGATATTGCCAAAATTACTTTTGGGCTCAAACAGGAGTACATTCCTTACTTGTGTGGTTTAAACTACACAGACAAACAGATAGCGGTAATCACCCAAAAATCAGTGAAATGCTCTGAAGTAGGAGCCATACCAGAAGCACAGCTAAATTATCCCACATTTTCTCTCGTTATAGATCCTGCTGGGAAGCCTCAGAAGTACACAAGAACGGTGACGAATGTTGGCCCCGCTAAATCAACTTATGAATTAGCTGTTGTAAGTCCACATAAGATAGACATCAGTGTGCAACCTGAGGAGTTCACATTCACAGAGATTAACCAGACAATGACGTACCATGTGGTGTTTACCGCACAAAAAGGTGCTGCGAAGGATGGTATAACATTTTCTCAGGGATATCTGAGCTGGGTCTCTCACCAGCATTCTGTTAGAAGCCAAATATCGGTGATCTTTGACACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

182

Amino Acids

20.06

Weight (kDa)

8.46

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	78 - 178	6.7e-27	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	51
AciI	CCGC	5 cut(s)	58, 72, 176, 318, 438
AclWI	GGATC	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	3 cut(s)	131, 290, 422
AfiI	CCNNNNNNNGG	1 cut(s)	529
AluBI	AGCT	4 cut(s)	23, 235, 341, 492
AluI	AGCT	4 cut(s)	23, 235, 341, 492
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	3 cut(s)	55, 68, 313
ApeKI	GCWGC	1 cut(s)	452
AspS9I	GGNCC	4 cut(s)	55, 69, 83, 314
AsuHPI	GGTGA	4 cut(s)	175, 313, 494, 544
AvaII	GGWCC	1 cut(s)	83
AxyI	CCTNAGG	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	58, 453
BlsI	GCNGC	2 cut(s)	59, 454
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	4 cut(s)	55, 69, 83, 314
BmiI	GGNNCC	2 cut(s)	217, 316
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	365
BsaI	GGTCTC	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	1 cut(s)	38
Bse21I	CCTNAGG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	365
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	4 cut(s)	296, 372, 479, 491
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	439
BseYI	CCCAGC	2 cut(s)	272, 492
BshFI	GGCC	3 cut(s)	57, 70, 315
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	1 cut(s)	502
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	3 cut(s)	57, 70, 315
Bso31I	GGTCTC	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	265, 534
BspACI	CCGC	5 cut(s)	58, 72, 176, 318, 438
BspANI	GGCC	3 cut(s)	57, 70, 315
BspCNI	CTCAG	4 cut(s)	295, 373, 480, 490
BspLI	GGNNCC	2 cut(s)	217, 316
BspMI	ACCTGC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	38
BssMI	GATC	2 cut(s)	265, 534
Bst4CI	ACNGT	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	5 cut(s)	282, 381, 477, 488, 546
BstF5I	GGATG	1 cut(s)	466
BstKTI	GATC	2 cut(s)	268, 537
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	2 cut(s)	265, 534
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	3 cut(s)	57, 70, 315
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	2 cut(s)	201, 376
BveI	ACCTGC	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	4 cut(s)	55, 69, 83, 314
Csp6I	GTAC	3 cut(s)	130, 289, 421
CviAII	CATG	1 cut(s)	425
CviQI	GTAC	3 cut(s)	130, 289, 421
DdeI	CTNAG	5 cut(s)	282, 381, 477, 488, 546
DpnI	GATC	2 cut(s)	267, 536
DpnII	GATC	2 cut(s)	265, 534
DraI	TTTAAA	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	502
Eco32I	GATATC	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	228
Eco81I	CCTNAGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	485
EcoT38I	GRGCYC	1 cut(s)	120
FaeI	CATG	1 cut(s)	428
FaiI	YATR	6 cut(s)	221, 263, 333, 357, 426, 467
FatI	CATG	1 cut(s)	424
FauI	CCCGC	2 cut(s)	79, 325
Fnu4HI	GCNGC	2 cut(s)	58, 453
FokI	GGATG	1 cut(s)	473
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	58, 453
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	2 cut(s)	58, 453
GsaI	CCCAGC	2 cut(s)	276, 496
HaeIII	GGCC	3 cut(s)	57, 70, 315
Hin1II	CATG	1 cut(s)	428
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	4 cut(s)	175, 313, 494, 544
Hpy166II	GTNNAC	5 cut(s)	86, 291, 353, 390, 435
Hpy188I	TCNGA	3 cut(s)	208, 285, 489
Hpy188III	TCNNGA	1 cut(s)	9
Hpy8I	GTNNAC	5 cut(s)	86, 291, 353, 390, 435
HpyAV	CCTTC	1 cut(s)	451
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	5 cut(s)	282, 381, 477, 488, 546
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	1 cut(s)	428
Kzo9I	GATC	2 cut(s)	265, 534
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	1 cut(s)	439
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	2 cut(s)	25, 301
MalI	GATC	2 cut(s)	267, 536
MboI	GATC	2 cut(s)	265, 534
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	3 cut(s)	105, 238, 335
MnlI	CCTC	2 cut(s)	291, 376
MseI	TTAA	2 cut(s)	152, 405
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	74
MssI	GTTTAAAC	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	508
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	2 cut(s)	265, 534
NlaIII	CATG	1 cut(s)	428
NlaIV	GGNNCC	2 cut(s)	217, 316
NmuCI	GTSAC	1 cut(s)	301
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	59, 454
PmeI	GTTTAAAC	1 cut(s)	153
PspFI	CCCAGC	2 cut(s)	272, 492
PspN4I	GGNNCC	2 cut(s)	217, 316
PspPI	GGNCC	4 cut(s)	55, 69, 83, 314
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	3 cut(s)	131, 290, 422
RsaNI	GTAC	3 cut(s)	130, 289, 421
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	152, 405
SatI	GCNGC	2 cut(s)	58, 453
Sau3AI	GATC	2 cut(s)	265, 534
Sau96I	GGNCC	4 cut(s)	55, 69, 83, 314
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	9 cut(s)	25, 65, 85, 237, 343, 382, 422, 451, 494
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	3 cut(s)	105, 238, 335
SsiI	CCGC	5 cut(s)	58, 72, 176, 318, 438
SspMI	CTAG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	422
TasI	AATT	3 cut(s)	105, 238, 335
TatI	WGTACW	2 cut(s)	129, 288
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	152, 405
Tru9I	TTAA	2 cut(s)	152, 405
TscAI	CASTG	2 cut(s)	201, 376
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	2 cut(s)	201, 376
VpaK11BI	GGWCC	1 cut(s)	83
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.