Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

28826862 .. 28841351

Gene Structure 14490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3696 bp

ATGGAGCAGTCGCACAAGGCACACAGGTCCCGGCAGTCGGGTTCCAAGGCCGATAAGAAGAAGTCCCAAAAAGTTTCGAAGAAGCAGAACCCCAAGGCATTCGCTTTCAGCTCAACTGTCAAAGCCAAGCGTCTCCAGTCTCGTGCCGTCGAGAAAGAGCAGCGAAGACTTCATGTTCCGACCATTGATCGCTCCTACGGCGAACAACCTCCTTTTGTTGTTCTTGTTCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGGAGGTGAAAGGCCCGATTACCATTGTATCAGGGAAGCAGAGGCGGGTTCAGTTTGTGGAGTGTCCCAATGATATCAATGGTATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTTCTTATAGATGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCAAAGATGCAAAGAAACTGAGGAAAGCAAAGCAGCATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATGTCACTCCCCCTGAAAAAGTGCGCTTGAATGATAAATGTGATAGAAATGTCACACTTTATGGTTATTTGCGGGGTTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTACAGTGTCGCTGGTATGACAGGCTTAGCTGACCCCTGTCCTTTACCCTCTGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCTATGTCTGGACTTGGGGATCTCCTGTATGACAAAGATGCTGTCTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAGGATGAAAAGGAGGAAGCAACGAACAAAGGAGAGCTTGAGGATGTGGGTGCGACCATGGTTAAAAGTCTTCAAAACCCAAAATATTCGCTTGATGAAAAGTTGGAGCAGAGCTTCATTAACTTTTATATCCAGAAGCCTAAATTGGAATCTCAACATGTTGAAAAAGATCTTGATGAATCCAGAAAACACATTCGTATGAGAGAGCCTTTAGAGGAACATCAGTTTGGGGAAACAATGAAAGCTGGGGGTTCTGGTCAAGAAAGTAATGTTGAGGATATTGATGGCTCAGAATCAAAATCTTATCAGAATGATGCTGCTCGTAATGTTGCACTAACAAAAAGTGATTCTAGTGGATCTGATAGAGAAAATGGTGACGTATCAGATCAAGATGTTAACCTTAAAGATCACTTGAAGGAACATGTTGAGTTTCATGATGGAAGGTCAAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGAGGAGTCAGAAGATGATGACGACGGTGGCGATAATGATGCAGATAATCATACCTCTTCTGGTTCAGAGTCTTCAGAGGAAGATAGAGAAATCGATGAGACAGATGATGATGTGGGAAACATAGCAAAGTGGAAGGAGTCTTTGGCAGAACAGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCATCGGTTTCAACTAAAGCCAATGAAGAACAAGACAGTAGTGAGGAGGAAAGTGATGGAGATGACTTTTTTAAGCCAAAAGGAGACGGAATTAAGAAACATAGAGTAGAAGCAGAAAATTGGAATGTTGAGGATTCTTCCAAATTTACAAATCATTCAATCAAGGACTGGAATGATAAAAAGCTTATAGAGAGTGTGCGCGATCGCTTTGTCACTGGTGATTGGTCGAAGGCTGCTAAAAGAAATCAAGACACAAAGGCGACATTTGAAGATGAAGATGCTGTCTTTGGTGACTTCGAAGATTTAGAAACGGGTGAGAAGCATGATGGATATCATACAAATGAGACGAGAAAAGTTGCAAACAACAAGAAAGCTGGCTTAGATGAAGAGGAGCGGAGGCTCAAAAAGCTTGCTCTTCGTGCCAAGTTTGATGCTCAATATCCTTTTGACACCAAAGACGGAATTTCTTTTGTGACCTTAATATTATCTACATATGATGAACCTGATACAAGTGAGGAGGAACCTGATGATACACATGTAAGCCAGTTTGGACGAGATCGAGCTAAAGAAAGCGGCTATGTTGACAAGCTGGTGGGAGCTGACGCCAACTTCTTTCAGCTGAAGGAGGAGATTGAACTCCGGAAACAAATGAATATAGCCGAACTCAATGACCTTGATGAGGACACCCGATTAGAGGTTGAGGGTTTCCGGACAGGGACTTACCTTCGGTTGGAAGTTCATGATGTTCCTTATGAAATGGTTGAATATTTTGATCCCTGCCAGCCTGTTTTGGTTGGAGGAATTGGTCTTGGGGAAGAAAGCACTGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTGCTAAAGACCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCTGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTATACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCACTCCCAATACTGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGCAACATTTAGGATCACCGCCACGGCAGTTGTGCTTGAGTTCAACCATGCATCGCGAATAGTGAAGAAACTCAAACTAGTTGGTTACCCTTGCAAGATATTCAAGAATACAGCACTTATAAAAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCTGTTCGAACAGTCAGTGGCATCCGGGGGCAGGTGAAAAAGGCTGCAAAAGAAGAAATTGGTAACCAACCGAAAAAGAAGGGTGGACAACCAAAAGAAGGAATTGTTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTGTTTTTGCGCGCTTGGACTCAAGTTGATGTTCCTTGCTTTTACAACCCATTAACCACATCTCTGCAACCCCGCGCTCTGACCTGGCGAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGAGCGCAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCAATTGAAAGGAAGCAGAGGAAGTTCAACCCACTGGTGATTCCCAAAGCAGTACAAGCAAGTCTTCCATTTAAATCAAAGCCTAAGGATACACCGAATAGAAGAAAGCAACTTCTTGAGGATAGAAGAGCTGTTGTGAGGGAGCCTCATGAACAGAAAATTCATGCTCTGCTTCAAAATCTTCGGTTAATCAAATCTGAGAAGTTAAAGAAGCGCAAGATAAAGGATGAGAAAAAAAGAAAAGAAATTGAAGCACAGAAAGCCAAAGATGAGCAGTTGACAAGAAAGCGCCAGAGAGAAGAACGACGAGAGAGATACCGGGTGCAAGACAAAGCTCAGAAGAAAATGAGGAGACACGCGGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1231

Amino Acids

141.38

Weight (kDa)

8.54

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	232 - 305	4.6e-26	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	804 - 1064	8.2e-83	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2966
AarI	CACCTGC	2 cut(s)	857, 3037
Acc36I	ACCTGC	2 cut(s)	857, 3037
AccBSI	CCGCTC	1 cut(s)	2164
AccI	GTMKAC	1 cut(s)	2750
AccII	CGCG	5 cut(s)	1971, 2902, 3174, 3237, 3686
AccIII	TCCGGA	2 cut(s)	2409, 2478
AciI	CCGC	9 cut(s)	346, 396, 826, 2164, 2343, 2620, 2865, 3235, 3686
AclWI	GGATC	4 cut(s)	1005, 1426, 2537, 2867
AcsI	RAATTY	5 cut(s)	401, 1913, 2232, 2830, 3486
AcuI	CTGAAG	2 cut(s)	1623, 2411
AcyI	GRCGYC	1 cut(s)	2373
AfaI	GTAC	1 cut(s)	3381
AflII	CTTAAG	1 cut(s)	2744
AflIII	ACRYGT	3 cut(s)	1219, 1483, 2305
AhlI	ACTAGT	1 cut(s)	2923
AjnI	CCWGG	3 cut(s)	1062, 2609, 3245
AjuI	GAANNNNNNNTTGG	6 cut(s)	1190, 1222, 1272, 1304, 1691, 1723
AloI	GAACNNNNNNTCC	2 cut(s)	709, 741
Alw21I	GWGCWC	1 cut(s)	3131
Alw26I	GTCTC	7 cut(s)	137, 144, 1658, 1723, 1848, 2108, 3673
Alw44I	GTGCAC	1 cut(s)	3127
AlwI	GGATC	4 cut(s)	1005, 1426, 2537, 2867
Aor13HI	TCCGGA	2 cut(s)	2409, 2478
AoxI	GGCC	4 cut(s)	48, 313, 2607, 2788
ApaI	GGGCCC	1 cut(s)	2792
ApaLI	GTGCAC	1 cut(s)	3127
ApeKI	GCWGC	7 cut(s)	160, 565, 932, 949, 1379, 2003, 3059
ApoI	RAATTY	5 cut(s)	401, 1913, 2232, 2830, 3486
ArsI	GACNNNNNNTTYG	2 cut(s)	1005, 1037
AsiSI	GCGATCGC	1 cut(s)	1975
AspLEI	GCGC	8 cut(s)	780, 1971, 3174, 3176, 3239, 3288, 3543, 3618
AspS9I	GGNCC	5 cut(s)	27, 233, 314, 2788, 2789
AsuC2I	CCSGG	3 cut(s)	31, 3041, 3647
AsuII	TTCGAA	3 cut(s)	77, 2067, 3022
AvaII	GGWCC	2 cut(s)	27, 233
AxyI	CCTNAGG	1 cut(s)	3411
BaeGI	GKGCMC	2 cut(s)	2792, 3131
BaeI	ACNNNNGTAYC	4 cut(s)	312, 345, 2292, 2325
BanII	GRGCYC	1 cut(s)	2792
BauI	CACGAG	1 cut(s)	141
BbsI	GAAGAC	4 cut(s)	172, 1124, 1629, 3383
Bbv12I	GWGCWC	1 cut(s)	3131
BbvI	GCAGC	7 cut(s)	172, 577, 919, 936, 1366, 1990, 3046
BccI	CCATC	9 cut(s)	425, 596, 708, 1340, 1493, 1820, 2090, 2622, 2669
BceAI	ACGGC	3 cut(s)	131, 214, 2886
BcgI	CGANNNNNNTGC	2 cut(s)	1586, 1620
BciT130I	CCWGG	3 cut(s)	1064, 2611, 3247
BciVI	GTATCC	2 cut(s)	2591, 3409
BclI	TGATCA	2 cut(s)	261, 1039
BcnI	CCSGG	3 cut(s)	31, 3041, 3647
BcoDI	GTCTC	7 cut(s)	137, 144, 1658, 1723, 1848, 2108, 3673
BcuI	ACTAGT	1 cut(s)	2923
BfaI	CTAG	3 cut(s)	737, 1413, 2924
BfmI	CTRYAG	1 cut(s)	3264
BfoI	RGCGCY	1 cut(s)	3619
BfrI	CTTAAG	1 cut(s)	2744
BfuAI	ACCTGC	2 cut(s)	857, 3037
BfuI	GTATCC	2 cut(s)	2591, 3409
BglII	AGATCT	2 cut(s)	1231, 2986
BlpI	GCTNAGC	1 cut(s)	904
Bme1390I	CCNGG	6 cut(s)	31, 1064, 2611, 3041, 3247, 3647
Bme18I	GGWCC	2 cut(s)	27, 233
BmgT120I	GGNCC	5 cut(s)	27, 233, 314, 2788, 2789
BmiI	GGNNCC	6 cut(s)	29, 43, 2292, 2789, 2790, 3471
BmrFI	CCNGG	6 cut(s)	31, 1064, 2611, 3041, 3247, 3647
BoxI	GACNNNNGTC	1 cut(s)	915
BpiI	GAAGAC	4 cut(s)	172, 1124, 1629, 3383
BplI	GAGNNNNNCTC	4 cut(s)	706, 738, 3457, 3489
BpmI	CTGGAG	2 cut(s)	119, 2739
Bpu1102I	GCTNAGC	1 cut(s)	904
Bpu14I	TTCGAA	3 cut(s)	77, 2067, 3022
BpuEI	CTTGAG	4 cut(s)	1121, 2903, 3168, 3464
BpuMI	CCSGG	3 cut(s)	31, 3041, 3647
Bsa29I	ATCGAT	1 cut(s)	1659
BsaBI	GATNNNNATC	1 cut(s)	2100
BsaHI	GRCGYC	1 cut(s)	2373
BsaJI	CCNNGG	7 cut(s)	45, 93, 240, 487, 1119, 2868, 3040
BsaWI	WCCGGW	2 cut(s)	2409, 2478
Bse1I	ACTGG	8 cut(s)	136, 1943, 1990, 2314, 2599, 2652, 2815, 3366
Bse21I	CCTNAGG	1 cut(s)	3411
Bse3DI	GCAATG	4 cut(s)	416, 2731, 2767, 2784
Bse8I	GATNNNNATC	1 cut(s)	2100
BseAI	TCCGGA	2 cut(s)	2409, 2478
BseBI	CCWGG	3 cut(s)	1064, 2611, 3247
BseCI	ATCGAT	1 cut(s)	1659
BseDI	CCNNGG	7 cut(s)	45, 93, 240, 487, 1119, 2868, 3040
BseGI	GGATG	7 cut(s)	700, 724, 1072, 1111, 3036, 3261, 3559
BseJI	GATNNNNATC	1 cut(s)	2100
BseMI	GCAATG	4 cut(s)	416, 2731, 2767, 2784
BseMII	CTCAG	6 cut(s)	542, 1365, 2997, 3261, 3516, 3677
BseNI	ACTGG	8 cut(s)	136, 1943, 1990, 2314, 2599, 2652, 2815, 3366
BsePI	GCGCGC	1 cut(s)	3172
BseRI	GAGGAG	7 cut(s)	1583, 1829, 2174, 2300, 2411, 3292, 3691
BseSI	GKGCMC	2 cut(s)	2792, 3131
BseXI	GCAGC	7 cut(s)	172, 577, 919, 936, 1366, 1990, 3046
BseYI	CCCAGC	1 cut(s)	1307
Bsh1236I	CGCG	5 cut(s)	1971, 2902, 3174, 3237, 3686
Bsh1285I	CGRYCG	1 cut(s)	1975
BshFI	GGCC	4 cut(s)	50, 315, 2609, 2790
BshVI	ATCGAT	1 cut(s)	1659
BsiEI	CGRYCG	1 cut(s)	1975
BsiHKAI	GWGCWC	1 cut(s)	3131
BsiSI	CCGG	5 cut(s)	31, 2410, 2479, 3040, 3646
BslFI	GGGAC	5 cut(s)	13, 49, 253, 351, 2500
BsmAI	GTCTC	7 cut(s)	137, 144, 1658, 1723, 1848, 2108, 3673
BsmBI	CGTCTC	3 cut(s)	137, 1848, 2108
BsmFI	GGGAC	5 cut(s)	13, 49, 253, 351, 2500
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	4 cut(s)	50, 315, 2609, 2790
Bsp119I	TTCGAA	3 cut(s)	77, 2067, 3022
Bsp120I	GGGCCC	1 cut(s)	2788
Bsp1286I	GDGCHC	2 cut(s)	2792, 3131
Bsp13I	TCCGGA	2 cut(s)	2409, 2478
Bsp1720I	GCTNAGC	1 cut(s)	904
Bsp19I	CCATGG	2 cut(s)	487, 1119
Bsp68I	TCGCGA	1 cut(s)	2902
BspACI	CCGC	9 cut(s)	346, 396, 826, 2164, 2343, 2620, 2865, 3235, 3686
BspANI	GGCC	4 cut(s)	50, 315, 2609, 2790
BspCNI	CTCAG	6 cut(s)	543, 1364, 2996, 3262, 3517, 3676
BspDI	ATCGAT	1 cut(s)	1659
BspEI	TCCGGA	2 cut(s)	2409, 2478
BspFNI	CGCG	5 cut(s)	1971, 2902, 3174, 3237, 3686
BspHI	TCATGA	4 cut(s)	637, 1495, 2509, 3475
BspLI	GGNNCC	6 cut(s)	29, 43, 2292, 2789, 2790, 3471
BspMI	ACCTGC	2 cut(s)	857, 3037
BspPI	GGATC	4 cut(s)	1005, 1426, 2537, 2867
BspQI	GCTCTTC	2 cut(s)	2190, 3448
BspT104I	TTCGAA	3 cut(s)	77, 2067, 3022
BspTI	CTTAAG	1 cut(s)	2744
BsrBI	CCGCTC	1 cut(s)	2164
BsrDI	GCAATG	4 cut(s)	416, 2731, 2767, 2784
BsrI	ACTGG	8 cut(s)	136, 1943, 1990, 2314, 2599, 2652, 2815, 3366
BssECI	CCNNGG	7 cut(s)	45, 93, 240, 487, 1119, 2868, 3040
BssHII	GCGCGC	1 cut(s)	3172
BssNAI	GTATAC	1 cut(s)	2751
BssNI	GRCGYC	1 cut(s)	2373
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	5 cut(s)	45, 93, 240, 487, 1119
Bst1107I	GTATAC	1 cut(s)	2751
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	3 cut(s)	1064, 2611, 3247
Bst4CI	ACNGT	6 cut(s)	118, 884, 1592, 1808, 3028, 3265
Bst6I	CTCTTC	5 cut(s)	1560, 1627, 2151, 2190, 3448
BstACI	GRCGYC	1 cut(s)	2373
BstAFI	CTTAAG	1 cut(s)	2744
BstAPI	GCANNNNNTGC	2 cut(s)	404, 2740
BstBI	TTCGAA	3 cut(s)	77, 2067, 3022
BstC8I	GCNNGC	6 cut(s)	2146, 2181, 2552, 2607, 2741, 3174
BstDEI	CTNAG	9 cut(s)	551, 904, 1351, 2149, 2983, 3270, 3411, 3525, 3663
BstDSI	CCRYGG	3 cut(s)	487, 1119, 2868
BstEII	GGTNACC	2 cut(s)	2930, 3077
BstENI	CCTNNNNNAGG	1 cut(s)	2447
BstF5I	GGATG	7 cut(s)	700, 724, 1072, 1111, 3036, 3261, 3559
BstFNI	CGCG	5 cut(s)	1971, 2902, 3174, 3237, 3686
BstH2I	RGCGCY	1 cut(s)	3619
BstHHI	GCGC	8 cut(s)	780, 1971, 3174, 3176, 3239, 3288, 3543, 3618
BstMAI	GTCTC	7 cut(s)	137, 144, 1658, 1723, 1848, 2108, 3673
BstMCI	CGRYCG	1 cut(s)	1975
BstMWI	GCNNNNNNNGC	9 cut(s)	198, 404, 413, 2176, 2189, 2629, 2740, 3383, 3587
BstNI	CCWGG	3 cut(s)	1064, 2611, 3247
BstNSI	RCATGY	6 cut(s)	1223, 1487, 2309, 2605, 2743, 2767
BstPAI	GACNNNNGTC	1 cut(s)	915
BstPI	GGTNACC	2 cut(s)	2930, 3077
BstSCI	CCNGG	6 cut(s)	29, 1062, 2609, 3039, 3245, 3645
BstSFI	CTRYAG	1 cut(s)	3264
BstSLI	GKGCMC	2 cut(s)	2792, 3131
BstUI	CGCG	5 cut(s)	1971, 2902, 3174, 3237, 3686
BstV1I	GCAGC	7 cut(s)	172, 577, 919, 936, 1366, 1990, 3046
BstV2I	GAAGAC	4 cut(s)	172, 1124, 1629, 3383
BstX2I	RGATCY	4 cut(s)	997, 1231, 1418, 2986
BstYI	RGATCY	4 cut(s)	997, 1231, 1418, 2986
BstZ17I	GTATAC	1 cut(s)	2751
Bsu15I	ATCGAT	1 cut(s)	1659
Bsu36I	CCTNAGG	1 cut(s)	3411
BsuI	GTATCC	2 cut(s)	2591, 3409
BsuRI	GGCC	4 cut(s)	50, 315, 2609, 2790
BsuTUI	ATCGAT	1 cut(s)	1659
BtgI	CCRYGG	3 cut(s)	487, 1119, 2868
BtgZI	GCGATG	2 cut(s)	2720, 2883
BtsCI	GGATG	7 cut(s)	700, 724, 1072, 1111, 3036, 3261, 3559
BtsIMutI	CAGTG	6 cut(s)	889, 1983, 2592, 2659, 3037, 3359
BtuMI	TCGCGA	1 cut(s)	2902
BveI	ACCTGC	2 cut(s)	857, 3037
Cac8I	GCNNGC	6 cut(s)	2146, 2181, 2552, 2607, 2741, 3174
CciI	TCATGA	4 cut(s)	637, 1495, 2509, 3475
CfoI	GCGC	8 cut(s)	780, 1971, 3174, 3176, 3239, 3288, 3543, 3618
Cfr13I	GGNCC	5 cut(s)	27, 233, 314, 2788, 2789
ClaI	ATCGAT	1 cut(s)	1659
CseI	GACGC	2 cut(s)	119, 2381
Csp6I	GTAC	1 cut(s)	3380
CspCI	CAANNNNNGTGG	2 cut(s)	2857, 2892
CviQI	GTAC	1 cut(s)	3380
DdeI	CTNAG	9 cut(s)	551, 904, 1351, 2149, 2983, 3270, 3411, 3525, 3663
DraI	TTTAAA	2 cut(s)	573, 3400
Eam1104I	CTCTTC	5 cut(s)	1560, 1627, 2151, 2190, 3448
EarI	CTCTTC	5 cut(s)	1560, 1627, 2151, 2190, 3448
Eco130I	CCWWGG	5 cut(s)	45, 93, 240, 487, 1119
Eco24I	GRGCYC	1 cut(s)	2792
Eco32I	GATATC	2 cut(s)	376, 2102
Eco47I	GGWCC	2 cut(s)	27, 233
Eco57I	CTGAAG	2 cut(s)	1623, 2411
Eco81I	CCTNAGG	1 cut(s)	3411
Eco91I	GGTNACC	2 cut(s)	2930, 3077
EcoNI	CCTNNNNNAGG	1 cut(s)	2447
EcoO109I	RGGNCCY	3 cut(s)	27, 2788, 2789
EcoO65I	GGTNACC	2 cut(s)	2930, 3077
EcoRII	CCWGG	3 cut(s)	1062, 2609, 3245
EcoRV	GATATC	2 cut(s)	376, 2102
EcoT14I	CCWWGG	5 cut(s)	45, 93, 240, 487, 1119
EcoT22I	ATGCAT	2 cut(s)	2769, 2899
EcoT38I	GRGCYC	1 cut(s)	2792
ErhI	CCWWGG	5 cut(s)	45, 93, 240, 487, 1119
Esp3I	CGTCTC	3 cut(s)	137, 1848, 2108
FalI	AAGNNNNNCTT	4 cut(s)	1083, 1115, 3375, 3407
FaqI	GGGAC	5 cut(s)	13, 49, 253, 351, 2500
FauI	CCCGC	3 cut(s)	339, 819, 3242
FauNDI	CATATG	1 cut(s)	2263
FbaI	TGATCA	2 cut(s)	261, 1039
FblI	GTMKAC	1 cut(s)	2750
FokI	GGATG	7 cut(s)	687, 711, 1079, 1118, 3023, 3268, 3566
FriOI	GRGCYC	1 cut(s)	2792
FspBI	CTAG	3 cut(s)	737, 1413, 2924
GlaI	GCGC	8 cut(s)	779, 1970, 3173, 3175, 3238, 3287, 3542, 3617
GsaI	CCCAGC	1 cut(s)	1311
GsuI	CTGGAG	2 cut(s)	119, 2739
HaeII	RGCGCY	1 cut(s)	3619
HaeIII	GGCC	4 cut(s)	50, 315, 2609, 2790
HapII	CCGG	5 cut(s)	31, 2410, 2479, 3040, 3646
HgaI	GACGC	2 cut(s)	119, 2381
HhaI	GCGC	8 cut(s)	780, 1971, 3174, 3176, 3239, 3288, 3543, 3618
Hin1I	GRCGYC	1 cut(s)	2373
Hin6I	GCGC	8 cut(s)	778, 1969, 3172, 3174, 3237, 3286, 3541, 3616
HinP1I	GCGC	8 cut(s)	778, 1969, 3172, 3174, 3237, 3286, 3541, 3616
HincII	GTYRAC	4 cut(s)	1459, 2353, 3307, 3606
HindII	GTYRAC	4 cut(s)	1459, 2353, 3307, 3606
HindIII	AAGCTT	2 cut(s)	1952, 2177
HpaI	GTTAAC	2 cut(s)	1459, 3307
HpaII	CCGG	5 cut(s)	31, 2410, 2479, 3040, 3646
Hpy166II	GTNNAC	8 cut(s)	1459, 2353, 2751, 2979, 3101, 3129, 3307, 3606
Hpy8I	GTNNAC	8 cut(s)	1459, 2353, 2751, 2979, 3101, 3129, 3307, 3606
Hpy99I	CGWCG	3 cut(s)	152, 1592, 3636
HpyCH4III	ACNGT	6 cut(s)	118, 884, 1592, 1808, 3028, 3265
HpyCH4IV	ACGT	2 cut(s)	655, 1440
HpyF10VI	GCNNNNNNNGC	9 cut(s)	198, 404, 413, 2176, 2189, 2629, 2740, 3383, 3587
HpyF3I	CTNAG	9 cut(s)	551, 904, 1351, 2149, 2983, 3270, 3411, 3525, 3663
HpySE526I	ACGT	2 cut(s)	655, 1440
Hsp92I	GRCGYC	1 cut(s)	2373
HspAI	GCGC	8 cut(s)	778, 1969, 3172, 3174, 3237, 3286, 3541, 3616
Kpn2I	TCCGGA	2 cut(s)	2409, 2478
Ksp22I	TGATCA	2 cut(s)	261, 1039
KspAI	GTTAAC	2 cut(s)	1459, 3307
LguI	GCTCTTC	2 cut(s)	2190, 3448
LmnI	GCTCC	7 cut(s)	4, 197, 605, 1168, 2161, 2366, 3469
Lsp1109I	GCAGC	7 cut(s)	172, 577, 919, 936, 1366, 1990, 3046
MaeI	CTAG	3 cut(s)	737, 1413, 2924
MaeII	ACGT	2 cut(s)	655, 1440
MbiI	CCGCTC	1 cut(s)	2164
MfeI	CAATTG	1 cut(s)	3330
MflI	RGATCY	4 cut(s)	997, 1231, 1418, 2986
MhlI	GDGCHC	2 cut(s)	2792, 3131
MlyI	GAGTC	4 cut(s)	1580, 1643, 1712, 3175
MmeI	TCCRAC	4 cut(s)	203, 1146, 2481, 2545
Mph1103I	ATGCAT	2 cut(s)	2769, 2899
MroI	TCCGGA	2 cut(s)	2409, 2478
MslI	CAYNNNNRTG	3 cut(s)	729, 1259, 2109
MspA1I	CMGCKG	1 cut(s)	2389
MspCI	CTTAAG	1 cut(s)	2744
MspI	CCGG	5 cut(s)	31, 2410, 2479, 3040, 3646
MspR9I	CCNGG	6 cut(s)	31, 1064, 2611, 3041, 3247, 3647
MunI	CAATTG	1 cut(s)	3330
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	3 cut(s)	1064, 2611, 3247
MvnI	CGCG	5 cut(s)	1971, 2902, 3174, 3237, 3686
MwoI	GCNNNNNNNGC	9 cut(s)	198, 404, 413, 2176, 2189, 2629, 2740, 3383, 3587
NciI	CCSGG	3 cut(s)	31, 3041, 3647
NcoI	CCATGG	2 cut(s)	487, 1119
NdeI	CATATG	1 cut(s)	2263
NlaIV	GGNNCC	6 cut(s)	29, 43, 2292, 2789, 2790, 3471
NmuCI	GTSAC	8 cut(s)	757, 805, 1436, 1981, 2060, 2242, 2654, 3155
NruI	TCGCGA	1 cut(s)	2902
NsiI	ATGCAT	2 cut(s)	2769, 2899
NspI	RCATGY	6 cut(s)	1223, 1487, 2309, 2605, 2743, 2767
NspV	TTCGAA	3 cut(s)	77, 2067, 3022
PaeI	GCATGC	1 cut(s)	2743
PagI	TCATGA	4 cut(s)	637, 1495, 2509, 3475
PaqCI	CACCTGC	2 cut(s)	857, 3037
PauI	GCGCGC	1 cut(s)	3172
PciI	ACATGT	3 cut(s)	1219, 1483, 2305
PciSI	GCTCTTC	2 cut(s)	2190, 3448
PcsI	WCGNNNNNNNCGW	1 cut(s)	1593
PctI	GAATGC	1 cut(s)	98
Ple19I	CGATCG	1 cut(s)	1975
PleI	GAGTC	4 cut(s)	1579, 1642, 1711, 3175
PpsI	GAGTC	4 cut(s)	1579, 1642, 1711, 3175
PpuMI	RGGWCCY	1 cut(s)	27
PscI	ACATGT	3 cut(s)	1219, 1483, 2305
PshAI	GACNNNNGTC	1 cut(s)	915
PsiI	TTATAA	1 cut(s)	2966
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	3 cut(s)	1062, 2609, 3245
PspEI	GGTNACC	2 cut(s)	2930, 3077
PspFI	CCCAGC	1 cut(s)	1307
PspGI	CCWGG	3 cut(s)	1062, 2609, 3245
PspN4I	GGNNCC	6 cut(s)	29, 43, 2292, 2789, 2790, 3471
PspOMI	GGGCCC	1 cut(s)	2788
PspPI	GGNCC	5 cut(s)	27, 233, 314, 2788, 2789
PspPPI	RGGWCCY	1 cut(s)	27
PsuI	RGATCY	4 cut(s)	997, 1231, 1418, 2986
PteI	GCGCGC	1 cut(s)	3172
PvuI	CGATCG	1 cut(s)	1975
PvuII	CAGCTG	1 cut(s)	2389
RgaI	GCGATCGC	1 cut(s)	1975
RruI	TCGCGA	1 cut(s)	2902
RsaI	GTAC	1 cut(s)	3381
RsaNI	GTAC	1 cut(s)	3380
RseI	CAYNNNNRTG	3 cut(s)	729, 1259, 2109
SapI	GCTCTTC	2 cut(s)	2190, 3448
Sau96I	GGNCC	5 cut(s)	27, 233, 314, 2788, 2789
SchI	GAGTC	4 cut(s)	1580, 1643, 1712, 3175
ScrFI	CCNGG	6 cut(s)	31, 1064, 2611, 3041, 3247, 3647
SduI	GDGCHC	2 cut(s)	2792, 3131
SfaAI	GCGATCGC	1 cut(s)	1975
SfcI	CTRYAG	1 cut(s)	3264
SfuI	TTCGAA	3 cut(s)	77, 2067, 3022
SgfI	GCGATCGC	1 cut(s)	1975
SinI	GGWCC	2 cut(s)	27, 233
SmiI	ATTTAAAT	1 cut(s)	3400
SmiMI	CAYNNNNRTG	3 cut(s)	729, 1259, 2109
SmlI	CTYRAG	5 cut(s)	1100, 2744, 2882, 3183, 3443
SmoI	CTYRAG	5 cut(s)	1100, 2744, 2882, 3183, 3443
SpeI	ACTAGT	1 cut(s)	2923
SphI	GCATGC	1 cut(s)	2743
SsiI	CCGC	9 cut(s)	346, 396, 826, 2164, 2343, 2620, 2865, 3235, 3686
SspI	AATATT	4 cut(s)	1148, 2253, 2537, 3292
SspMI	CTAG	3 cut(s)	737, 1413, 2924
StyD4I	CCNGG	6 cut(s)	29, 1062, 2609, 3039, 3245, 3645
StyI	CCWWGG	5 cut(s)	45, 93, 240, 487, 1119
SwaI	ATTTAAAT	1 cut(s)	3400
TaaI	ACNGT	6 cut(s)	118, 884, 1592, 1808, 3028, 3265
TaiI	ACGT	2 cut(s)	658, 1443
TaqI	TCGA	9 cut(s)	77, 150, 1659, 1727, 1997, 2067, 2329, 3001, 3022
TatI	WGTACW	1 cut(s)	3379
TauI	GCSGC	3 cut(s)	398, 2346, 2623
TscAI	CASTG	6 cut(s)	889, 1990, 2599, 2659, 3037, 3366
TseFI	GTSAC	8 cut(s)	757, 805, 1436, 1981, 2060, 2242, 2654, 3155
TseI	GCWGC	7 cut(s)	160, 565, 932, 949, 1379, 2003, 3059
Tsp45I	GTSAC	8 cut(s)	757, 805, 1436, 1981, 2060, 2242, 2654, 3155
TspGWI	ACGGA	2 cut(s)	1872, 2244
TspRI	CASTG	6 cut(s)	889, 1990, 2599, 2659, 3037, 3366
Vha464I	CTTAAG	1 cut(s)	2744
VneI	GTGCAC	1 cut(s)	3127
VpaK11BI	GGWCC	2 cut(s)	27, 233
XagI	CCTNNNNNAGG	1 cut(s)	2447
XapI	RAATTY	5 cut(s)	401, 1913, 2232, 2830, 3486
XceI	RCATGY	6 cut(s)	1223, 1487, 2309, 2605, 2743, 2767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2812
XmiI	GTMKAC	1 cut(s)	2750
XspI	CTAG	3 cut(s)	737, 1413, 2924
Zsp2I	ATGCAT	2 cut(s)	2769, 2899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.