Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

54584695 .. 54595166

Gene Structure 10472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG337900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3672 bp

ATGAGTATGGAGCAGTCGCACAAGGTACACAGGTCCCGGCAGTCGGGTTCCAAGGCCGATAAGAAGAAGCCCCAAAAAGATTCGAAGAAGCAAAACCCTAAGGCATTCGCTTTCAGCTCAACTGTCAAAGCCAAGCGTCTCCAGTCTCGTGCCGTTGAGAAAGAGCAGCGAAGACTTCATGTTCCGACCATTGATCGCTCCTACGGCGAACAGCCTCCTTTTGTTGTTCTAGTTCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGGAGGTGAAAGGCCCGATTACCATTGTATCAGGGAAGCAGAGGCGGGTTCAGTTTGTGGAGTGCCCCAATGATATCAATGGTATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTTCTTATAGATGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCAAAGATGCAAAGAAACTGAGGAAAACAAAGCAGAATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATGTCACTCCCCCTGAAAAAGTGCGCTTGAATAATAAATGTGATAGAAATGTCACACTTTATGGTTATTTGCGGGGGTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTACAGTGTCGCTGGTGTGACAGGCTTAGCTGATCCCTGTCCTTTACCCTCTGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCTATGTCTGGACTTGGGGATCTCCTGTATGACAAAGATGCTGTCTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAGGATGAAAAGGAGGAAGCAACGAACAAAGGAGAGCTTGAGGATGTGGGTGCGACCATGGTTAAAAGTCTTCAAAACCCAAAATATTCGCTTGATGAAAAGTTGGAGCAGAGCTTCATTAACTTTTATATCCAGAAACCTAAATTGGAATCTCAACATGATGAAAAAGATCTTGATGAATCCAGAAAATGCATTCGTATGATAGAGCCTTTAGAGGAACATCAGTTTGGGGAAACAATGAAAGCTGGGGGTTCTGGTCAAGAAAGTAATGTTGAGGATATTGATGGCTCAGAATCAAAATCTTATCAGAATGATGCTGCTCGTAATGTTGCACTAACAAAAAGTGATTCTAGTGGATCTGATAGAGAAAATGGTGATGTATCAGATCAAGATGTTAACCTTAAAGATCACTTGAAGGAACATGTTGAGTTTCATGATGGAAGGTCAAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGTGGAGTCAGAAGATGATGACGACGGTGGTGATAATGATGCAGATAATCATACCTCTTCTGGTTCAGAGTCTTCAGAGGAAGATAGAGAAATCGATGAGACAGATGATGATGTGGGAAACATAGCAAAGTGGAAGGAGTCTTTGGCAGAACGGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCATCTGTTTCAACTAAAGCCAATGAAGAACAAGACAGTAGTGAGGAGGAAAGTGATGGAGATGACTTTTTTAAGCCAAAAGGAGACGGAATTAAGAAACATAGAGTAGAAGCAGAAAATTGGAATGTTGAGGATTCTTCCAAATTTACGAATCATTCAATCAAGGACTGGAATGATAAAAAGCTTATAGAGAGTGTGCGCGATCGCTTTGTCACTGGTGATTGGTTGAAGGCTGCTAAAAGAAATCAAGACACAGAGGTGACATTTGAAGATGAAGATGCTGTTTTTGGTGACTTCGAAGATTTAGAAACGGGTGAGAGGCATGATGGATATCATACAAATGAGACGAGAAAAGTTGCAAACAACAAGAAAGCTGGCTTAGATGAAGAGGAGCGGAGGCTCAAAAAGCTTGCTCTTCGTGCCAAGTTTGATGCTCAATATCCTTTTGACACCAAAGACGGAATTTCTTTTGTGACCTTAATATTATCTACATATGATGAACCTGATACAAGTGAGGAGGAACCTGATGATACACATGTAAGCCAGTTTGGACGAGATCGAGCTAAAGAAAGCGGCTATGTTGACAAGCTGAAGGAGGAGATTGAACTCCGGAAACAAATGAATATAGCCGAACTCAATGACCTTGATGAGGACACCCGATTAGAGGTTGAGGGTTTCCGGACAGGGACTTACCTTCGGTTGGAAGTTCATGATGTTCCTTATGAGATGGTTGAATATTTTGATCCCTGCCAGCCTGTTTTGGTTGGAGGAATTGGTCTTGGGGAAGAAAGCACTGGATACATGCAGGCCAGGTTAAAGCGGCACAGATGGCACAAGAAAGTGCTAAAGACCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCTGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTATACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCCAATACTGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGCAACATTTAGGATCACCGCCACGGCAGTTGTGCTTGAGTTCAACCATGCATCGCGAATAGTGAAGAAACTCAAACTAGTTGGTTACCCTTGCAAGATATTCAAGAATACAGCACTTATAAAAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCTGTTCGAACAGTCAGTGGCATCCGGGGGCAGGTGAAAAAGGCTGCAAAAGAAGAAATTGGTAACCAACCGAAAAAGAAGGGTGGACAACCAAAAGAAGGGATTGTTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTGTTTTTGCGCGCTTGGACTCAAGTTGATGTTCCTTGCTTTTACAACCCATTAACCACATCTCTGCAACCCCGAGCTCTGACCTGGCGAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGAACGCAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCAATTGAAAGGAAGCAGAGGAAGTTCAACCCACTGATGATTCCCAAAGCAGTACAAGCAAGTCTTCCATTTAAATCAAAGCCTAAGGATACACCGAATAGAAGAAAGCAACTTCTTGAGGATAGAAGAGCTGTTGTGAGGGAGCCTCATGAACAGAAAATTCATGCTCTGCTTCAAAATCTTCGGTTAATCAAATCTGAGAAGTTAAAGAAGCGCAAGATCAAGGATGAGAAAAAAAGAAAAGAAATTGAAGCACAGAAAGCCAAAGATGAGCAGTTGACAAGAAAGCGCCAGAGAGAAGAACGACGAGAGAGATACCGGGTGCAAGACAAAGCTCAGAAGAAAATGAGGAGACACGCGGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1223

Amino Acids

140.61

Weight (kDa)

8.47

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	234 - 307	2.1e-26	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	763 - 1056	5.8e-84	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2942
AarI	CACCTGC	2 cut(s)	863, 3013
Acc36I	ACCTGC	2 cut(s)	863, 3013
AccBSI	CCGCTC	1 cut(s)	2170
AccI	GTMKAC	1 cut(s)	2726
AccII	CGCG	4 cut(s)	1977, 2878, 3150, 3662
AccIII	TCCGGA	2 cut(s)	2385, 2454
AciI	CCGC	8 cut(s)	352, 402, 832, 2170, 2349, 2596, 2841, 3662
AclWI	GGATC	5 cut(s)	911, 1011, 1432, 2513, 2843
AcsI	RAATTY	6 cut(s)	407, 574, 1919, 2238, 2806, 3462
AcuI	CTGAAG	2 cut(s)	1629, 2387
AfaI	GTAC	2 cut(s)	27, 3357
AflII	CTTAAG	1 cut(s)	2720
AflIII	ACRYGT	2 cut(s)	1489, 2311
AhlI	ACTAGT	1 cut(s)	2899
AjnI	CCWGG	3 cut(s)	1068, 2585, 3221
AjuI	GAANNNNNNNTTGG	6 cut(s)	1196, 1228, 1278, 1310, 1697, 1729
AleI	CACNNNNGTG	1 cut(s)	2033
AloI	GAACNNNNNNTCC	2 cut(s)	715, 747
Alw21I	GWGCWC	2 cut(s)	3107, 3217
Alw26I	GTCTC	7 cut(s)	143, 150, 1664, 1729, 1854, 2114, 3649
Alw44I	GTGCAC	1 cut(s)	3103
AlwI	GGATC	5 cut(s)	911, 1011, 1432, 2513, 2843
Ama87I	CYCGRG	1 cut(s)	3210
Aor13HI	TCCGGA	2 cut(s)	2385, 2454
AoxI	GGCC	4 cut(s)	54, 319, 2583, 2764
ApaI	GGGCCC	1 cut(s)	2768
ApaLI	GTGCAC	1 cut(s)	3103
ApeKI	GCWGC	6 cut(s)	166, 938, 955, 1385, 2009, 3035
ApoI	RAATTY	6 cut(s)	407, 574, 1919, 2238, 2806, 3462
ArsI	GACNNNNNNTTYG	2 cut(s)	1011, 1043
AsiSI	GCGATCGC	1 cut(s)	1981
AspLEI	GCGC	6 cut(s)	786, 1977, 3150, 3152, 3519, 3594
AspS9I	GGNCC	5 cut(s)	33, 239, 320, 2764, 2765
AsuC2I	CCSGG	3 cut(s)	37, 3017, 3623
AsuII	TTCGAA	3 cut(s)	83, 2073, 2998
AvaI	CYCGRG	1 cut(s)	3210
AvaII	GGWCC	2 cut(s)	33, 239
AxyI	CCTNAGG	2 cut(s)	99, 3387
BaeGI	GKGCMC	3 cut(s)	374, 2768, 3107
BaeI	ACNNNNGTAYC	6 cut(s)	17, 50, 318, 351, 2298, 2331
BanII	GRGCYC	2 cut(s)	2768, 3217
BauI	CACGAG	1 cut(s)	147
BbsI	GAAGAC	4 cut(s)	178, 1130, 1635, 3359
Bbv12I	GWGCWC	2 cut(s)	3107, 3217
BbvI	GCAGC	6 cut(s)	178, 925, 942, 1372, 1996, 3022
BceAI	ACGGC	3 cut(s)	137, 220, 2862
BciT130I	CCWGG	3 cut(s)	1070, 2587, 3223
BciVI	GTATCC	2 cut(s)	2567, 3385
BclI	TGATCA	2 cut(s)	267, 1045
BcnI	CCSGG	3 cut(s)	37, 3017, 3623
BcoDI	GTCTC	7 cut(s)	143, 150, 1664, 1729, 1854, 2114, 3649
BcuI	ACTAGT	1 cut(s)	2899
BfaI	CTAG	4 cut(s)	230, 743, 1419, 2900
BfmI	CTRYAG	1 cut(s)	3240
BfoI	RGCGCY	1 cut(s)	3595
BfrI	CTTAAG	1 cut(s)	2720
BfuAI	ACCTGC	2 cut(s)	863, 3013
BfuI	GTATCC	2 cut(s)	2567, 3385
BglII	AGATCT	2 cut(s)	1237, 2962
BisI	GCNGC	9 cut(s)	167, 402, 939, 956, 1386, 2010, 2350, 2597, 3036
BlpI	GCTNAGC	1 cut(s)	910
BlsI	GCNGC	9 cut(s)	168, 403, 940, 957, 1387, 2011, 2351, 2598, 3037
Bme1390I	CCNGG	6 cut(s)	37, 1070, 2587, 3017, 3223, 3623
Bme18I	GGWCC	2 cut(s)	33, 239
BmeT110I	CYCGRG	1 cut(s)	3210
BmgT120I	GGNCC	5 cut(s)	33, 239, 320, 2764, 2765
BmiI	GGNNCC	6 cut(s)	35, 49, 2298, 2765, 2766, 3447
BmrFI	CCNGG	6 cut(s)	37, 1070, 2587, 3017, 3223, 3623
BpiI	GAAGAC	4 cut(s)	178, 1130, 1635, 3359
BplI	GAGNNNNNCTC	4 cut(s)	712, 744, 3433, 3465
BpmI	CTGGAG	2 cut(s)	125, 2715
Bpu1102I	GCTNAGC	1 cut(s)	910
Bpu14I	TTCGAA	3 cut(s)	83, 2073, 2998
BpuEI	CTTGAG	4 cut(s)	1127, 2879, 3144, 3440
BpuMI	CCSGG	3 cut(s)	37, 3017, 3623
Bsa29I	ATCGAT	1 cut(s)	1665
BsaBI	GATNNNNATC	1 cut(s)	2106
BsaJI	CCNNGG	6 cut(s)	51, 246, 493, 1125, 2844, 3016
BsaWI	WCCGGW	2 cut(s)	2385, 2454
Bse1I	ACTGG	7 cut(s)	142, 1949, 1996, 2320, 2575, 2628, 2791
Bse21I	CCTNAGG	2 cut(s)	99, 3387
Bse3DI	GCAATG	4 cut(s)	422, 2707, 2743, 2760
Bse8I	GATNNNNATC	1 cut(s)	2106
BseAI	TCCGGA	2 cut(s)	2385, 2454
BseBI	CCWGG	3 cut(s)	1070, 2587, 3223
BseCI	ATCGAT	1 cut(s)	1665
BseDI	CCNNGG	6 cut(s)	51, 246, 493, 1125, 2844, 3016
BseGI	GGATG	7 cut(s)	706, 730, 1078, 1117, 3012, 3237, 3535
BseJI	GATNNNNATC	1 cut(s)	2106
BseMI	GCAATG	4 cut(s)	422, 2707, 2743, 2760
BseMII	CTCAG	6 cut(s)	548, 1371, 2973, 3237, 3492, 3653
BseNI	ACTGG	7 cut(s)	142, 1949, 1996, 2320, 2575, 2628, 2791
BsePI	GCGCGC	1 cut(s)	3148
BseRI	GAGGAG	6 cut(s)	1835, 2180, 2306, 2387, 3268, 3667
BseSI	GKGCMC	3 cut(s)	374, 2768, 3107
BseXI	GCAGC	6 cut(s)	178, 925, 942, 1372, 1996, 3022
BseYI	CCCAGC	1 cut(s)	1313
Bsh1236I	CGCG	4 cut(s)	1977, 2878, 3150, 3662
Bsh1285I	CGRYCG	1 cut(s)	1981
BshFI	GGCC	4 cut(s)	56, 321, 2585, 2766
BshVI	ATCGAT	1 cut(s)	1665
BsiEI	CGRYCG	1 cut(s)	1981
BsiHKAI	GWGCWC	2 cut(s)	3107, 3217
BsiHKCI	CYCGRG	1 cut(s)	3210
BsiSI	CCGG	5 cut(s)	37, 2386, 2455, 3016, 3622
BslFI	GGGAC	3 cut(s)	19, 259, 2476
BsmAI	GTCTC	7 cut(s)	143, 150, 1664, 1729, 1854, 2114, 3649
BsmBI	CGTCTC	3 cut(s)	143, 1854, 2114
BsmFI	GGGAC	3 cut(s)	19, 259, 2476
BsmI	GAATGC	2 cut(s)	104, 1260
BsnI	GGCC	4 cut(s)	56, 321, 2585, 2766
BsoBI	CYCGRG	1 cut(s)	3210
Bsp119I	TTCGAA	3 cut(s)	83, 2073, 2998
Bsp120I	GGGCCC	1 cut(s)	2764
Bsp1286I	GDGCHC	4 cut(s)	374, 2768, 3107, 3217
Bsp13I	TCCGGA	2 cut(s)	2385, 2454
Bsp1720I	GCTNAGC	1 cut(s)	910
Bsp19I	CCATGG	2 cut(s)	493, 1125
Bsp68I	TCGCGA	1 cut(s)	2878
BspACI	CCGC	8 cut(s)	352, 402, 832, 2170, 2349, 2596, 2841, 3662
BspANI	GGCC	4 cut(s)	56, 321, 2585, 2766
BspCNI	CTCAG	6 cut(s)	549, 1370, 2972, 3238, 3493, 3652
BspDI	ATCGAT	1 cut(s)	1665
BspEI	TCCGGA	2 cut(s)	2385, 2454
BspFNI	CGCG	4 cut(s)	1977, 2878, 3150, 3662
BspHI	TCATGA	4 cut(s)	643, 1501, 2485, 3451
BspLI	GGNNCC	6 cut(s)	35, 49, 2298, 2765, 2766, 3447
BspMI	ACCTGC	2 cut(s)	863, 3013
BspPI	GGATC	5 cut(s)	911, 1011, 1432, 2513, 2843
BspQI	GCTCTTC	2 cut(s)	2196, 3424
BspT104I	TTCGAA	3 cut(s)	83, 2073, 2998
BspTI	CTTAAG	1 cut(s)	2720
BsrBI	CCGCTC	1 cut(s)	2170
BsrDI	GCAATG	4 cut(s)	422, 2707, 2743, 2760
BsrI	ACTGG	7 cut(s)	142, 1949, 1996, 2320, 2575, 2628, 2791
BssECI	CCNNGG	6 cut(s)	51, 246, 493, 1125, 2844, 3016
BssHII	GCGCGC	1 cut(s)	3148
BssNAI	GTATAC	1 cut(s)	2727
BssSI	CACGAG	1 cut(s)	147
BssT1I	CCWWGG	4 cut(s)	51, 246, 493, 1125
Bst1107I	GTATAC	1 cut(s)	2727
Bst2BI	CACGAG	1 cut(s)	147
Bst2UI	CCWGG	3 cut(s)	1070, 2587, 3223
Bst4CI	ACNGT	6 cut(s)	124, 890, 1598, 1814, 3004, 3241
Bst6I	CTCTTC	4 cut(s)	1633, 2157, 2196, 3424
BstAFI	CTTAAG	1 cut(s)	2720
BstAPI	GCANNNNNTGC	2 cut(s)	410, 2716
BstBI	TTCGAA	3 cut(s)	83, 2073, 2998
BstC8I	GCNNGC	6 cut(s)	2152, 2187, 2528, 2583, 2717, 3150
BstDSI	CCRYGG	3 cut(s)	493, 1125, 2844
BstEII	GGTNACC	2 cut(s)	2906, 3053
BstENI	CCTNNNNNAGG	1 cut(s)	2423
BstF5I	GGATG	7 cut(s)	706, 730, 1078, 1117, 3012, 3237, 3535
BstFNI	CGCG	4 cut(s)	1977, 2878, 3150, 3662
BstH2I	RGCGCY	1 cut(s)	3595
BstHHI	GCGC	6 cut(s)	786, 1977, 3150, 3152, 3519, 3594
BstMAI	GTCTC	7 cut(s)	143, 150, 1664, 1729, 1854, 2114, 3649
BstMCI	CGRYCG	1 cut(s)	1981
BstMWI	GCNNNNNNNGC	9 cut(s)	204, 410, 419, 2182, 2195, 2605, 2716, 3359, 3563
BstNI	CCWGG	3 cut(s)	1070, 2587, 3223
BstNSI	RCATGY	5 cut(s)	1493, 2315, 2581, 2719, 2743
BstPI	GGTNACC	2 cut(s)	2906, 3053
BstSCI	CCNGG	6 cut(s)	35, 1068, 2585, 3015, 3221, 3621
BstSFI	CTRYAG	1 cut(s)	3240
BstSLI	GKGCMC	3 cut(s)	374, 2768, 3107
BstUI	CGCG	4 cut(s)	1977, 2878, 3150, 3662
BstV1I	GCAGC	6 cut(s)	178, 925, 942, 1372, 1996, 3022
BstV2I	GAAGAC	4 cut(s)	178, 1130, 1635, 3359
BstX2I	RGATCY	4 cut(s)	1003, 1237, 1424, 2962
BstYI	RGATCY	4 cut(s)	1003, 1237, 1424, 2962
BstZ17I	GTATAC	1 cut(s)	2727
Bsu15I	ATCGAT	1 cut(s)	1665
Bsu36I	CCTNAGG	2 cut(s)	99, 3387
BsuI	GTATCC	2 cut(s)	2567, 3385
BsuRI	GGCC	4 cut(s)	56, 321, 2585, 2766
BsuTUI	ATCGAT	1 cut(s)	1665
BtgI	CCRYGG	3 cut(s)	493, 1125, 2844
BtgZI	GCGATG	2 cut(s)	2696, 2859
BtsCI	GGATG	7 cut(s)	706, 730, 1078, 1117, 3012, 3237, 3535
BtsIMutI	CAGTG	6 cut(s)	895, 1989, 2568, 2635, 3013, 3335
BtuMI	TCGCGA	1 cut(s)	2878
BveI	ACCTGC	2 cut(s)	863, 3013
Cac8I	GCNNGC	6 cut(s)	2152, 2187, 2528, 2583, 2717, 3150
CciI	TCATGA	4 cut(s)	643, 1501, 2485, 3451
CfoI	GCGC	6 cut(s)	786, 1977, 3150, 3152, 3519, 3594
Cfr13I	GGNCC	5 cut(s)	33, 239, 320, 2764, 2765
ClaI	ATCGAT	1 cut(s)	1665
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	26, 3356
CspCI	CAANNNNNGTGG	2 cut(s)	2833, 2868
CviQI	GTAC	2 cut(s)	26, 3356
DraI	TTTAAA	2 cut(s)	579, 3376
Eam1104I	CTCTTC	4 cut(s)	1633, 2157, 2196, 3424
EarI	CTCTTC	4 cut(s)	1633, 2157, 2196, 3424
Ecl136II	GAGCTC	1 cut(s)	3215
Eco130I	CCWWGG	4 cut(s)	51, 246, 493, 1125
Eco24I	GRGCYC	2 cut(s)	2768, 3217
Eco32I	GATATC	2 cut(s)	382, 2108
Eco47I	GGWCC	2 cut(s)	33, 239
Eco53kI	GAGCTC	1 cut(s)	3215
Eco57I	CTGAAG	2 cut(s)	1629, 2387
Eco81I	CCTNAGG	2 cut(s)	99, 3387
Eco88I	CYCGRG	1 cut(s)	3210
Eco91I	GGTNACC	2 cut(s)	2906, 3053
EcoICRI	GAGCTC	1 cut(s)	3215
EcoNI	CCTNNNNNAGG	1 cut(s)	2423
EcoO109I	RGGNCCY	3 cut(s)	33, 2764, 2765
EcoO65I	GGTNACC	2 cut(s)	2906, 3053
EcoRII	CCWGG	3 cut(s)	1068, 2585, 3221
EcoRV	GATATC	2 cut(s)	382, 2108
EcoT14I	CCWWGG	4 cut(s)	51, 246, 493, 1125
EcoT22I	ATGCAT	3 cut(s)	1262, 2745, 2875
EcoT38I	GRGCYC	2 cut(s)	2768, 3217
ErhI	CCWWGG	4 cut(s)	51, 246, 493, 1125
Esp3I	CGTCTC	3 cut(s)	143, 1854, 2114
FalI	AAGNNNNNCTT	4 cut(s)	1089, 1121, 3351, 3383
FaqI	GGGAC	3 cut(s)	19, 259, 2476
FauI	CCCGC	2 cut(s)	345, 825
FauNDI	CATATG	1 cut(s)	2269
FbaI	TGATCA	2 cut(s)	267, 1045
FblI	GTMKAC	1 cut(s)	2726
Fnu4HI	GCNGC	9 cut(s)	167, 402, 939, 956, 1386, 2010, 2350, 2597, 3036
FokI	GGATG	7 cut(s)	693, 717, 1085, 1124, 2999, 3244, 3542
FriOI	GRGCYC	2 cut(s)	2768, 3217
Fsp4HI	GCNGC	9 cut(s)	167, 402, 939, 956, 1386, 2010, 2350, 2597, 3036
FspBI	CTAG	4 cut(s)	230, 743, 1419, 2900
GlaI	GCGC	6 cut(s)	785, 1976, 3149, 3151, 3518, 3593
GluI	GCNGC	9 cut(s)	167, 402, 939, 956, 1386, 2010, 2350, 2597, 3036
GsaI	CCCAGC	1 cut(s)	1317
GsuI	CTGGAG	2 cut(s)	125, 2715
HaeII	RGCGCY	1 cut(s)	3595
HaeIII	GGCC	4 cut(s)	56, 321, 2585, 2766
HapII	CCGG	5 cut(s)	37, 2386, 2455, 3016, 3622
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	6 cut(s)	786, 1977, 3150, 3152, 3519, 3594
Hin6I	GCGC	6 cut(s)	784, 1975, 3148, 3150, 3517, 3592
HinP1I	GCGC	6 cut(s)	784, 1975, 3148, 3150, 3517, 3592
HincII	GTYRAC	4 cut(s)	1465, 2359, 3283, 3582
HindII	GTYRAC	4 cut(s)	1465, 2359, 3283, 3582
HindIII	AAGCTT	2 cut(s)	1958, 2183
HpaI	GTTAAC	2 cut(s)	1465, 3283
HpaII	CCGG	5 cut(s)	37, 2386, 2455, 3016, 3622
Hpy166II	GTNNAC	9 cut(s)	28, 1465, 2359, 2727, 2955, 3077, 3105, 3283, 3582
Hpy8I	GTNNAC	9 cut(s)	28, 1465, 2359, 2727, 2955, 3077, 3105, 3283, 3582
Hpy99I	CGWCG	2 cut(s)	1598, 3612
HpyCH4III	ACNGT	6 cut(s)	124, 890, 1598, 1814, 3004, 3241
HpyCH4IV	ACGT	1 cut(s)	661
HpyF10VI	GCNNNNNNNGC	9 cut(s)	204, 410, 419, 2182, 2195, 2605, 2716, 3359, 3563
HpySE526I	ACGT	1 cut(s)	661
HspAI	GCGC	6 cut(s)	784, 1975, 3148, 3150, 3517, 3592
Kpn2I	TCCGGA	2 cut(s)	2385, 2454
Ksp22I	TGATCA	2 cut(s)	267, 1045
KspAI	GTTAAC	2 cut(s)	1465, 3283
LguI	GCTCTTC	2 cut(s)	2196, 3424
LmnI	GCTCC	6 cut(s)	10, 203, 611, 1174, 2167, 3445
Lsp1109I	GCAGC	6 cut(s)	178, 925, 942, 1372, 1996, 3022
MaeI	CTAG	4 cut(s)	230, 743, 1419, 2900
MaeII	ACGT	1 cut(s)	661
MbiI	CCGCTC	1 cut(s)	2170
MfeI	CAATTG	1 cut(s)	3306
MflI	RGATCY	4 cut(s)	1003, 1237, 1424, 2962
MhlI	GDGCHC	4 cut(s)	374, 2768, 3107, 3217
MlyI	GAGTC	4 cut(s)	1586, 1649, 1718, 3151
MmeI	TCCRAC	4 cut(s)	209, 1152, 2457, 2521
Mph1103I	ATGCAT	3 cut(s)	1262, 2745, 2875
MroI	TCCGGA	2 cut(s)	2385, 2454
MslI	CAYNNNNRTG	4 cut(s)	735, 1265, 2033, 2115
MspCI	CTTAAG	1 cut(s)	2720
MspI	CCGG	5 cut(s)	37, 2386, 2455, 3016, 3622
MspR9I	CCNGG	6 cut(s)	37, 1070, 2587, 3017, 3223, 3623
MunI	CAATTG	1 cut(s)	3306
Mva1269I	GAATGC	2 cut(s)	104, 1260
MvaI	CCWGG	3 cut(s)	1070, 2587, 3223
MvnI	CGCG	4 cut(s)	1977, 2878, 3150, 3662
MwoI	GCNNNNNNNGC	9 cut(s)	204, 410, 419, 2182, 2195, 2605, 2716, 3359, 3563
NciI	CCSGG	3 cut(s)	37, 3017, 3623
NcoI	CCATGG	2 cut(s)	493, 1125
NdeI	CATATG	1 cut(s)	2269
NlaIV	GGNNCC	6 cut(s)	35, 49, 2298, 2765, 2766, 3447
NmuCI	GTSAC	9 cut(s)	763, 811, 901, 1987, 2035, 2066, 2248, 2630, 3131
NruI	TCGCGA	1 cut(s)	2878
NsiI	ATGCAT	3 cut(s)	1262, 2745, 2875
NspI	RCATGY	5 cut(s)	1493, 2315, 2581, 2719, 2743
NspV	TTCGAA	3 cut(s)	83, 2073, 2998
OliI	CACNNNNGTG	1 cut(s)	2033
PaeI	GCATGC	1 cut(s)	2719
PagI	TCATGA	4 cut(s)	643, 1501, 2485, 3451
PaqCI	CACCTGC	2 cut(s)	863, 3013
PauI	GCGCGC	1 cut(s)	3148
PciI	ACATGT	2 cut(s)	1489, 2311
PciSI	GCTCTTC	2 cut(s)	2196, 3424
PctI	GAATGC	2 cut(s)	104, 1260
PkrI	GCNGC	9 cut(s)	168, 403, 940, 957, 1387, 2011, 2351, 2598, 3037
Ple19I	CGATCG	1 cut(s)	1981
PleI	GAGTC	4 cut(s)	1585, 1648, 1717, 3151
PpsI	GAGTC	4 cut(s)	1585, 1648, 1717, 3151
PpuMI	RGGWCCY	1 cut(s)	33
PscI	ACATGT	2 cut(s)	1489, 2311
PsiI	TTATAA	1 cut(s)	2942
Psp124BI	GAGCTC	1 cut(s)	3217
Psp5II	RGGWCCY	1 cut(s)	33
Psp6I	CCWGG	3 cut(s)	1068, 2585, 3221
PspEI	GGTNACC	2 cut(s)	2906, 3053
PspFI	CCCAGC	1 cut(s)	1313
PspGI	CCWGG	3 cut(s)	1068, 2585, 3221
PspN4I	GGNNCC	6 cut(s)	35, 49, 2298, 2765, 2766, 3447
PspOMI	GGGCCC	1 cut(s)	2764
PspPI	GGNCC	5 cut(s)	33, 239, 320, 2764, 2765
PspPPI	RGGWCCY	1 cut(s)	33
PsuI	RGATCY	4 cut(s)	1003, 1237, 1424, 2962
PteI	GCGCGC	1 cut(s)	3148
PvuI	CGATCG	1 cut(s)	1981
RgaI	GCGATCGC	1 cut(s)	1981
RruI	TCGCGA	1 cut(s)	2878
RsaI	GTAC	2 cut(s)	27, 3357
RsaNI	GTAC	2 cut(s)	26, 3356
RseI	CAYNNNNRTG	4 cut(s)	735, 1265, 2033, 2115
SacI	GAGCTC	1 cut(s)	3217
SapI	GCTCTTC	2 cut(s)	2196, 3424
SatI	GCNGC	9 cut(s)	167, 402, 939, 956, 1386, 2010, 2350, 2597, 3036
Sau96I	GGNCC	5 cut(s)	33, 239, 320, 2764, 2765
SchI	GAGTC	4 cut(s)	1586, 1649, 1718, 3151
ScrFI	CCNGG	6 cut(s)	37, 1070, 2587, 3017, 3223, 3623
SduI	GDGCHC	4 cut(s)	374, 2768, 3107, 3217
SfaAI	GCGATCGC	1 cut(s)	1981
SfcI	CTRYAG	1 cut(s)	3240
SfuI	TTCGAA	3 cut(s)	83, 2073, 2998
SgfI	GCGATCGC	1 cut(s)	1981
SinI	GGWCC	2 cut(s)	33, 239
SmiI	ATTTAAAT	1 cut(s)	3376
SmiMI	CAYNNNNRTG	4 cut(s)	735, 1265, 2033, 2115
SmlI	CTYRAG	5 cut(s)	1106, 2720, 2858, 3159, 3419
SmoI	CTYRAG	5 cut(s)	1106, 2720, 2858, 3159, 3419
SpeI	ACTAGT	1 cut(s)	2899
SphI	GCATGC	1 cut(s)	2719
SsiI	CCGC	8 cut(s)	352, 402, 832, 2170, 2349, 2596, 2841, 3662
SspI	AATATT	4 cut(s)	1154, 2259, 2513, 3268
SspMI	CTAG	4 cut(s)	230, 743, 1419, 2900
SstI	GAGCTC	1 cut(s)	3217
StyD4I	CCNGG	6 cut(s)	35, 1068, 2585, 3015, 3221, 3621
StyI	CCWWGG	4 cut(s)	51, 246, 493, 1125
SwaI	ATTTAAAT	1 cut(s)	3376
TaaI	ACNGT	6 cut(s)	124, 890, 1598, 1814, 3004, 3241
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	7 cut(s)	83, 1665, 1733, 2073, 2335, 2977, 2998
TatI	WGTACW	1 cut(s)	3355
TauI	GCSGC	3 cut(s)	404, 2352, 2599
TscAI	CASTG	6 cut(s)	895, 1996, 2575, 2635, 3013, 3342
TseFI	GTSAC	9 cut(s)	763, 811, 901, 1987, 2035, 2066, 2248, 2630, 3131
TseI	GCWGC	6 cut(s)	166, 938, 955, 1385, 2009, 3035
Tsp45I	GTSAC	9 cut(s)	763, 811, 901, 1987, 2035, 2066, 2248, 2630, 3131
TspGWI	ACGGA	3 cut(s)	1738, 1878, 2250
TspRI	CASTG	6 cut(s)	895, 1996, 2575, 2635, 3013, 3342
Vha464I	CTTAAG	1 cut(s)	2720
VneI	GTGCAC	1 cut(s)	3103
VpaK11BI	GGWCC	2 cut(s)	33, 239
XagI	CCTNNNNNAGG	1 cut(s)	2423
XapI	RAATTY	6 cut(s)	407, 574, 1919, 2238, 2806, 3462
XceI	RCATGY	5 cut(s)	1493, 2315, 2581, 2719, 2743
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2788
XmiI	GTMKAC	1 cut(s)	2726
XspI	CTAG	4 cut(s)	230, 743, 1419, 2900
Zsp2I	ATGCAT	3 cut(s)	1262, 2745, 2875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.