Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

27176476 .. 27177008

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG258500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGATAGTGGGACTAAGGAGCAGTCGCATAAGGGCCATAGGGCCAGGCAGTCGGGTCCTAAGGCTAATAAGAAGCCTGAAACCTCAAGAATCGACCGAGCAGAACAGGCCTATGGCGAAGAACCAGCTCCATACGTTGTTGTGGTGCATGGACCTCCAAAGGTTGGCAAGTCCTTGTTAATAGAGTCACTCGTAAAGCATTATACCAAGCTCGATTTGCCTGAGAAGGTTCGAGGCCCGATTACCATTGTGTCAGGTAGTTACAGATTGTGGAGTGCCCGAATGACATCAACGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

99

Amino Acids

10.95

Weight (kDa)

9.87

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	128, 211
AluI	AGCT	2 cut(s)	128, 211
AoxI	GGCC	4 cut(s)	34, 42, 108, 235
AspS9I	GGNCC	5 cut(s)	34, 42, 56, 152, 236
AvaII	GGWCC	2 cut(s)	56, 152
AxyI	CCTNAGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	2 cut(s)	56, 152
BmgT120I	GGNCC	5 cut(s)	34, 42, 56, 152, 236
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	4 cut(s)	36, 44, 110, 237
BsiEI	CGRYCG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	4 cut(s)	36, 44, 110, 237
Bsp1286I	GDGCHC	1 cut(s)	280
BspANI	GGCC	4 cut(s)	36, 44, 110, 237
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	15, 60, 222
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 217
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	44
BstSLI	GKGCMC	1 cut(s)	280
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	36, 44, 110, 237
Cfr13I	GGNCC	5 cut(s)	34, 42, 56, 152, 236
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	8 cut(s)	36, 44, 65, 76, 110, 128, 211, 237
CviKI_1	RGCY	8 cut(s)	36, 44, 65, 76, 110, 128, 211, 237
DdeI	CTNAG	3 cut(s)	15, 60, 222
Eco147I	AGGCCT	1 cut(s)	110
Eco47I	GGWCC	2 cut(s)	56, 152
Eco81I	CCTNAGG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	152
FaiI	YATR	7 cut(s)	30, 39, 114, 133, 150, 204, 298
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	1 cut(s)	148
HaeIII	GGCC	4 cut(s)	36, 44, 110, 237
Hin1II	CATG	1 cut(s)	152
HinfI	GANTC	2 cut(s)	90, 185
Hpy188III	TCNNGA	1 cut(s)	87
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 217
HpyF3I	CTNAG	3 cut(s)	15, 60, 222
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	19, 133
LpnPI	CCDG	7 cut(s)	31, 58, 90, 92, 138, 234, 240
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	186, 260
MboII	GAAGA	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	3 cut(s)	94, 165, 227
MseI	TTAA	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	2 cut(s)	107, 217
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	90
PflMI	CCANNNNNTGG	1 cut(s)	164
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PpuMI	RGGWCCY	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	5 cut(s)	34, 42, 56, 152, 236
PspPPI	RGGWCCY	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	179
Sau96I	GGNCC	5 cut(s)	34, 42, 56, 152, 236
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	8 cut(s)	86, 130, 138, 157, 165, 213, 231, 259
SinI	GGWCC	2 cut(s)	56, 152
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SseBI	AGGCCT	1 cut(s)	110
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	93, 213, 232
TaqII	GACCGA	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseFI	GTSAC	1 cut(s)	186
Tsp45I	GTSAC	1 cut(s)	186
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	56, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.