Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

15172377 .. 15174617

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0181400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2241 bp

ATGTTTTACTTGTCACTGGCAGTTGCTGATGAAAAAGTGGCAGCATTGGAGCCGCTAGCCAAGACAAAGAGCATGCAAACTTATATAGTTTGGGTGGAAAAGCCAGTCAGCGATTTGATTGCACAATCTGAACATGAAGATTTAGGGAGTTGGTACCAGACATTTTTGCCTCAAACCATTGCAAACTCAAACCAGCTCAAGAAGCCACGAATGGTTTATGCATACCACAATGTAGCAACTGGCTTCGCAGCAAAGCTGACAGCAGAGGAAGTTGAAGAGATGGAAAAGAAAGATGGGTTTATCTCCGCTCATCCAGAACGAAATCTGCAATTGCACACGACTCATAGTCCTAACTTCTTGGGGCTGCAGCAAGGAATGGGACTTGGTAAAGGGCCTAACTATGGTGAAGGTGTGATTATTGGAATTTTGGATGGTGGGATATTCCCAGACCATCCTTCATTTAGTGATGAAGGAGTACCACCTCCTCCAGTTAAATGGAAAGGCAAGTGTGATTTCGGCGGGACAGTCTGCAATAACAAGCTTATCGGTGCCAGAAGTTTTAATGGTGGAAAAACTACTGGAGGCCCTCCAGTTGACGATGAAGGCCATGGAACTCACACGTCAAGCACAGCTGGAGGAAATTTTGTGAAAGGTGCCAGCGTGTTTGGAATGGCCAACGGCACAGCAACTGGCATGGCACCTCATGCTCACTTGGCAATGTACAAAGTATGCTCAGACGGGAGTTGTTCTGAATCAGACATTATAGCTGCTATGGACACTGCTGTTGATGATGGCGTGGATGTGCTATCCCTTTCAATCGGTGGTGGCTCAGCTTATTTTTATGCTGATGGAATTGCAGTCGGCGCATTTGGAGCAATTCAGAAGGGAATCTTTGTCAGCTGTTCAGCTGGAAATGATGGCCCTGACTATATGACTTTATCCAATGAAGCTCCATGGATTCTCACGGTTGGAGCAAGCACCATTGACAGAAACATAAGAGCAACAGCAAAGCTTGGAAATGGGCAAGAATATGACGGGGAGTCAGTATTCCAGCCTAAAGATTTTAGTTCAAAACAGTTACCTCTTGTTTATGCAGGTGCACATAGCAATGATTCATCAGCTCTTTGCGATGTAGGGTCCCTTAAAAATGTTGAAGGGAAAGTAGTGGTGTGTGAGGTAGGTGGAGGAATTGGAAGAATTGCAAAAGGGGTAGAAGTGAAAAGAGCTGGTGGTGTTGCCATGATTCTTGTCAACCCAGACTTCGCTGGCTATACCACCATAGCAGACGCTCACGTGCTTCCGGCAACACATGTGAGTTACTCTGCAGGGGTGAGCATCAAAACCTATATAAATTCAACCTCAACTCCTACAGCGACAATCTTATTCAAAGGCACTGTCATCGGTGATCAGCTTGCTCCCAAGGTTGCTTTCTTTTCATCAAGAGGACCAAGCCTGGCAAGCCCTGCAATTTTGAAACCTGACATTATTGGTCCCGGTGTGAGCATCCTAGCTGCATGGCCTTTTTCGGTGGATAATGCCACAGAATCTAAGGCCACATTTGACATTATTTCAGGTACTTCAATGTCATGCCCTCACCTAAGTGGCATTGCAGCCTTGCTCAAGAGCTCACACCCTGACTGGTCAACTGCTGCCATTAAGTCTGCAATGATGACAACTGCTGAAGTAAACAACCTCGCTGGCTCGGCCATTCTTGATCAAACACTTCTTGCAGCAGACCTCTTTGCCATCGGCGCAGGCCATGTTAACCCTTCAAAAGCAAATGACCCTGGGCTCATCTACGACATACAACCAGAGGACTACATTCCTTACTTGTGTGGTTTGAATTACACAAGCAAACAGATAGCGGCAATCACCCAACAAAAAGTGTCGTGCTCTAAAGTAGGAGTCATACCAGAAGCACAGCTAAACTATCCCACATTTTGTATCTATATAGAGTCTGGTGGTGAGCCTCAGAATTACACAAGAACCTTGACCAATGTTGGCCCAGCTAATTCAACTTACAAATTGGCTCCCCTGAGACTACATAAAATGGACATCACTGTGCTACCTGAGGTGCTTACATTTACAGAGGTTAACCAGAAATTGACATACCGTGTGGTGTTTGCCGCACAAGACGGAGCTGGGAAAGATGGTATACCATTTTCTCAGGGATATTTGAGTTGGGTGTCTCATCAGCATTCTGTGAACAGCCAAATATCTGTGGTCTTTGACTATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

746

Amino Acids

78.64

Weight (kDa)

5.45

Isoelectric Point (pI)

30.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	27 - 112	3.6e-11	Peptidase inhibitor I9
Peptidase_S8	PF00082	135 - 563	1.9e-45	Subtilase family
PA	PF02225	359 - 445	4.5e-11	PA domain
fn3_6	PF17766	641 - 741	3.7e-21	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1085
Acc36I	ACCTGC	1 cut(s)	1085
Acc65I	GGTACC	1 cut(s)	153
AccB1I	GGYRCC	4 cut(s)	153, 548, 653, 697
AccBSI	CCGCTC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	2155
AciI	CCGC	5 cut(s)	53, 306, 519, 1865, 2127
AcoI	YGGCCR	2 cut(s)	672, 1704
AcsI	RAATTY	3 cut(s)	423, 640, 1351
AcuI	CTGAAG	1 cut(s)	1701
AcvI	CACGTG	1 cut(s)	1294
AfaI	GTAC	4 cut(s)	155, 477, 722, 1576
AfiI	CCNNNNNNNGG	1 cut(s)	401
AflIII	ACRYGT	2 cut(s)	618, 1309
AhdI	GACNNNNNGTC	2 cut(s)	345, 1039
AjiI	CACGTC	1 cut(s)	621
AjnI	CCWGG	2 cut(s)	1452, 1786
AjuI	GAANNNNNNNTTGG	2 cut(s)	1412, 1444
AleI	CACNNNNGTG	1 cut(s)	1599
Alw21I	GWGCWC	3 cut(s)	1102, 1628, 1895
Alw26I	GTCTC	2 cut(s)	2032, 2193
Alw44I	GTGCAC	1 cut(s)	1098
AlwNI	CAGNNNCTG	2 cut(s)	26, 689
ApaLI	GTGCAC	1 cut(s)	1098
ApeKI	GCWGC	9 cut(s)	41, 248, 364, 367, 767, 1511, 1610, 1649, 1730
ApoI	RAATTY	3 cut(s)	423, 640, 1351
ArsI	GACNNNNNNTTYG	2 cut(s)	1380, 1412
Asp718I	GGTACC	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	866, 1754
AspS9I	GGNCC	7 cut(s)	392, 584, 920, 1137, 1445, 1490, 2003
AsuC2I	CCSGG	1 cut(s)	1494
AsuHPI	GGTGA	6 cut(s)	416, 1342, 1415, 1586, 1864, 1976
AsuNHI	GCTAGC	1 cut(s)	55
AvaII	GGWCC	3 cut(s)	1137, 1445, 1490
AxyI	CCTNAGG	1 cut(s)	2070
BaeGI	GKGCMC	1 cut(s)	1102
BalI	TGGCCA	1 cut(s)	674
BanI	GGYRCC	4 cut(s)	153, 548, 653, 697
BanII	GRGCYC	2 cut(s)	1628, 1794
BbrPI	CACGTG	1 cut(s)	1294
Bbv12I	GWGCWC	3 cut(s)	1102, 1628, 1895
BbvI	GCAGC	9 cut(s)	53, 260, 351, 379, 754, 1498, 1622, 1636, 1742
BccI	CCATC	9 cut(s)	274, 287, 425, 459, 785, 842, 911, 1754, 2144
BceAI	ACGGC	1 cut(s)	694
BcgI	CGANNNNNNTGC	4 cut(s)	101, 135, 1381, 1415
BciT130I	CCWGG	2 cut(s)	1454, 1788
BclI	TGATCA	2 cut(s)	1405, 1714
BcnI	CCSGG	1 cut(s)	1494
BcoDI	GTCTC	2 cut(s)	2032, 2193
BfaI	CTAG	2 cut(s)	56, 1508
BfmI	CTRYAG	3 cut(s)	365, 1323, 1368
BfuAI	ACCTGC	1 cut(s)	1085
BlpI	GCTNAGC	1 cut(s)	829
Bme1390I	CCNGG	3 cut(s)	1454, 1494, 1788
Bme18I	GGWCC	3 cut(s)	1137, 1445, 1490
BmeRI	GACNNNNNGTC	2 cut(s)	345, 1039
BmgBI	CACGTC	1 cut(s)	621
BmgT120I	GGNCC	7 cut(s)	392, 584, 920, 1137, 1445, 1490, 2003
BmiI	GGNNCC	9 cut(s)	51, 155, 550, 655, 699, 1138, 1139, 1492, 2031
BmrFI	CCNGG	3 cut(s)	1454, 1494, 1788
BmsI	GCATC	2 cut(s)	1344, 1512
BmtI	GCTAGC	1 cut(s)	59
BpmI	CTGGAG	4 cut(s)	471, 573, 600, 654
Bpu1102I	GCTNAGC	1 cut(s)	829
BpuEI	CTTGAG	2 cut(s)	182, 1604
BpuMI	CCSGG	1 cut(s)	1494
BsaAI	YACGTR	1 cut(s)	1294
BsaJI	CCNNGG	5 cut(s)	607, 953, 1419, 1786, 1787
BsaXI	ACNNNNNCTCC	2 cut(s)	1348, 1378
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	8 cut(s)	21, 104, 244, 488, 583, 590, 694, 1643
Bse21I	CCTNAGG	1 cut(s)	2070
Bse3DI	GCAATG	5 cut(s)	177, 723, 1114, 1605, 1671
BseBI	CCWGG	2 cut(s)	1454, 1788
BseDI	CCNNGG	5 cut(s)	607, 953, 1419, 1786, 1787
BseGI	GGATG	5 cut(s)	310, 436, 451, 805, 1503
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMI	GCAATG	5 cut(s)	177, 723, 1114, 1605, 1671
BseMII	CTCAG	6 cut(s)	747, 843, 1985, 2027, 2061, 2180
BseNI	ACTGG	8 cut(s)	21, 104, 244, 488, 583, 590, 694, 1643
BseRI	GAGGAG	1 cut(s)	474
BseSI	GKGCMC	1 cut(s)	1102
BseXI	GCAGC	9 cut(s)	53, 260, 351, 379, 754, 1498, 1622, 1636, 1742
BseYI	CCCAGC	2 cut(s)	2005, 2141
BshNI	GGYRCC	4 cut(s)	153, 548, 653, 697
BsiHKAI	GWGCWC	3 cut(s)	1102, 1628, 1895
BsiSI	CCGG	2 cut(s)	1301, 1494
BslFI	GGGAC	4 cut(s)	393, 535, 1123, 1476
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmAI	GTCTC	2 cut(s)	2032, 2193
BsmFI	GGGAC	4 cut(s)	393, 535, 1123, 1476
BsmI	GAATGC	1 cut(s)	2197
Bsp1286I	GDGCHC	4 cut(s)	1102, 1628, 1794, 1895
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	2 cut(s)	1405, 1714
Bsp1720I	GCTNAGC	1 cut(s)	829
Bsp19I	CCATGG	2 cut(s)	607, 953
BspACI	CCGC	5 cut(s)	53, 306, 519, 1865, 2127
BspCNI	CTCAG	6 cut(s)	746, 842, 1984, 2028, 2062, 2179
BspLI	GGNNCC	9 cut(s)	51, 155, 550, 655, 699, 1138, 1139, 1492, 2031
BspMAI	CTGCAG	2 cut(s)	369, 1327
BspMI	ACCTGC	1 cut(s)	1085
BspOI	GCTAGC	1 cut(s)	59
BspT107I	GGYRCC	4 cut(s)	153, 548, 653, 697
BsrBI	CCGCTC	1 cut(s)	308
BsrDI	GCAATG	5 cut(s)	177, 723, 1114, 1605, 1671
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	8 cut(s)	21, 104, 244, 488, 583, 590, 694, 1643
BssECI	CCNNGG	5 cut(s)	607, 953, 1419, 1786, 1787
BssMI	GATC	2 cut(s)	1405, 1714
BssNAI	GTATAC	1 cut(s)	2156
BssT1I	CCWWGG	3 cut(s)	607, 953, 1419
Bst1107I	GTATAC	1 cut(s)	2156
Bst2UI	CCWGG	2 cut(s)	1454, 1788
Bst4CI	ACNGT	6 cut(s)	526, 967, 1077, 1396, 2062, 2114
Bst6I	CTCTTC	1 cut(s)	270
BstAPI	GCANNNNNTGC	2 cut(s)	704, 1463
BstAUI	TGTACA	1 cut(s)	720
BstBAI	YACGTR	1 cut(s)	1294
BstC8I	GCNNGC	9 cut(s)	57, 74, 658, 976, 1267, 1413, 1459, 1699, 1756
BstDEI	CTNAG	8 cut(s)	733, 829, 1548, 1598, 1971, 2036, 2070, 2166
BstDSI	CCRYGG	2 cut(s)	607, 953
BstF5I	GGATG	5 cut(s)	310, 436, 451, 805, 1503
BstHHI	GCGC	2 cut(s)	866, 1754
BstKTI	GATC	2 cut(s)	1408, 1717
BstMAI	GTCTC	2 cut(s)	2032, 2193
BstMBI	GATC	2 cut(s)	1405, 1714
BstMWI	GCNNNNNNNGC	9 cut(s)	202, 704, 713, 863, 872, 1458, 1463, 1703, 1751
BstNI	CCWGG	2 cut(s)	1454, 1788
BstNSI	RCATGY	2 cut(s)	76, 1313
BstSCI	CCNGG	3 cut(s)	1452, 1492, 1786
BstSFI	CTRYAG	3 cut(s)	365, 1323, 1368
BstSLI	GKGCMC	1 cut(s)	1102
BstV1I	GCAGC	9 cut(s)	53, 260, 351, 379, 754, 1498, 1622, 1636, 1742
BstXI	CCANNNNNNTGG	1 cut(s)	495
BstZ17I	GTATAC	1 cut(s)	2156
Bsu36I	CCTNAGG	1 cut(s)	2070
BtgI	CCRYGG	2 cut(s)	607, 953
BtgZI	GCGATG	1 cut(s)	1143
BtrI	CACGTC	1 cut(s)	621
BtsCI	GGATG	5 cut(s)	310, 436, 451, 805, 1503
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	4 cut(s)	14, 777, 1392, 2058
BveI	ACCTGC	1 cut(s)	1085
Cac8I	GCNNGC	9 cut(s)	57, 74, 658, 976, 1267, 1413, 1459, 1699, 1756
CaiI	CAGNNNCTG	2 cut(s)	26, 689
CfoI	GCGC	2 cut(s)	866, 1754
Cfr13I	GGNCC	7 cut(s)	392, 584, 920, 1137, 1445, 1490, 2003
CseI	GACGC	1 cut(s)	1295
Csp6I	GTAC	4 cut(s)	154, 476, 721, 1575
CviQI	GTAC	4 cut(s)	154, 476, 721, 1575
DdeI	CTNAG	8 cut(s)	733, 829, 1548, 1598, 1971, 2036, 2070, 2166
DpnI	GATC	2 cut(s)	1407, 1716
DpnII	GATC	2 cut(s)	1405, 1714
DriI	GACNNNNNGTC	2 cut(s)	345, 1039
EaeI	YGGCCR	2 cut(s)	672, 1704
Eam1104I	CTCTTC	1 cut(s)	270
Eam1105I	GACNNNNNGTC	2 cut(s)	345, 1039
EarI	CTCTTC	1 cut(s)	270
Ecl136II	GAGCTC	1 cut(s)	1626
Eco130I	CCWWGG	3 cut(s)	607, 953, 1419
Eco24I	GRGCYC	2 cut(s)	1628, 1794
Eco47I	GGWCC	3 cut(s)	1137, 1445, 1490
Eco53kI	GAGCTC	1 cut(s)	1626
Eco57I	CTGAAG	1 cut(s)	1701
Eco72I	CACGTG	1 cut(s)	1294
Eco81I	CCTNAGG	1 cut(s)	2070
EcoICRI	GAGCTC	1 cut(s)	1626
EcoO109I	RGGNCCY	3 cut(s)	392, 584, 1137
EcoRII	CCWGG	2 cut(s)	1452, 1786
EcoT14I	CCWWGG	3 cut(s)	607, 953, 1419
EcoT22I	ATGCAT	1 cut(s)	223
EcoT38I	GRGCYC	2 cut(s)	1628, 1794
ErhI	CCWWGG	3 cut(s)	607, 953, 1419
FalI	AAGNNNNNCTT	2 cut(s)	875, 907
FaqI	GGGAC	4 cut(s)	393, 535, 1123, 1476
FauI	CCCGC	1 cut(s)	512
FbaI	TGATCA	2 cut(s)	1405, 1714
FblI	GTMKAC	1 cut(s)	2155
FokI	GGATG	5 cut(s)	297, 438, 443, 812, 1490
FriOI	GRGCYC	2 cut(s)	1628, 1794
FspBI	CTAG	2 cut(s)	56, 1508
GlaI	GCGC	2 cut(s)	865, 1753
GsaI	CCCAGC	2 cut(s)	2009, 2145
GsuI	CTGGAG	4 cut(s)	471, 573, 600, 654
HapII	CCGG	2 cut(s)	1301, 1494
HgaI	GACGC	1 cut(s)	1295
HhaI	GCGC	2 cut(s)	866, 1754
Hin6I	GCGC	2 cut(s)	864, 1752
HinP1I	GCGC	2 cut(s)	864, 1752
HincII	GTYRAC	5 cut(s)	595, 1252, 1644, 1765, 2095
HindII	GTYRAC	5 cut(s)	595, 1252, 1644, 1765, 2095
HindIII	AAGCTT	2 cut(s)	539, 1010
HpaI	GTTAAC	2 cut(s)	1765, 2095
HpaII	CCGG	2 cut(s)	1301, 1494
HphI	GGTGA	6 cut(s)	416, 1342, 1415, 1586, 1864, 1976
Hpy166II	GTNNAC	9 cut(s)	595, 1100, 1252, 1644, 1687, 1765, 2095, 2156, 2206
Hpy188I	TCNGA	6 cut(s)	130, 736, 751, 757, 882, 1974
Hpy188III	TCNNGA	5 cut(s)	199, 314, 1440, 1621, 1712
Hpy8I	GTNNAC	9 cut(s)	595, 1100, 1252, 1644, 1687, 1765, 2095, 2156, 2206
HpyAV	CCTTC	7 cut(s)	401, 464, 465, 596, 877, 1148, 1779
HpyCH4III	ACNGT	6 cut(s)	526, 967, 1077, 1396, 2062, 2114
HpyCH4IV	ACGT	2 cut(s)	620, 1293
HpyF10VI	GCNNNNNNNGC	9 cut(s)	202, 704, 713, 863, 872, 1458, 1463, 1703, 1751
HpyF3I	CTNAG	8 cut(s)	733, 829, 1548, 1598, 1971, 2036, 2070, 2166
HpySE526I	ACGT	2 cut(s)	620, 1293
HspAI	GCGC	2 cut(s)	864, 1752
KflI	GGGWCCC	1 cut(s)	1137
KpnI	GGTACC	1 cut(s)	157
Ksp22I	TGATCA	2 cut(s)	1405, 1714
KspAI	GTTAAC	2 cut(s)	1765, 2095
Kzo9I	GATC	2 cut(s)	1405, 1714
LmnI	GCTCC	7 cut(s)	49, 872, 955, 971, 1420, 2035, 2138
Lsp1109I	GCAGC	9 cut(s)	53, 260, 351, 379, 754, 1498, 1622, 1636, 1742
LweI	GCATC	2 cut(s)	1344, 1512
MaeI	CTAG	2 cut(s)	56, 1508
MaeII	ACGT	2 cut(s)	620, 1293
MaeIII	GTNAC	3 cut(s)	12, 1077, 1316
MalI	GATC	2 cut(s)	1407, 1716
MbiI	CCGCTC	1 cut(s)	308
MboI	GATC	2 cut(s)	1405, 1714
MboII	GAAGA	3 cut(s)	149, 287, 1206
MfeI	CAATTG	1 cut(s)	329
MhlI	GDGCHC	4 cut(s)	1102, 1628, 1794, 1895
MlsI	TGGCCA	1 cut(s)	674
MluNI	TGGCCA	1 cut(s)	674
MlyI	GAGTC	4 cut(s)	334, 1049, 1914, 1964
MmeI	TCCRAC	1 cut(s)	949
Mox20I	TGGCCA	1 cut(s)	674
Mph1103I	ATGCAT	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	674
MseI	TTAA	6 cut(s)	492, 561, 1143, 1656, 1764, 2094
MslI	CAYNNNNRTG	3 cut(s)	1107, 1599, 2060
Msp20I	TGGCCA	1 cut(s)	674
MspA1I	CMGCKG	3 cut(s)	632, 900, 908
MspI	CCGG	2 cut(s)	1301, 1494
MspR9I	CCNGG	3 cut(s)	1454, 1494, 1788
MunI	CAATTG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	2197
MvaI	CCWGG	2 cut(s)	1454, 1788
MwoI	GCNNNNNNNGC	9 cut(s)	202, 704, 713, 863, 872, 1458, 1463, 1703, 1751
NciI	CCSGG	1 cut(s)	1494
NcoI	CCATGG	2 cut(s)	607, 953
NdeII	GATC	2 cut(s)	1405, 1714
NheI	GCTAGC	1 cut(s)	55
NlaIV	GGNNCC	9 cut(s)	51, 155, 550, 655, 699, 1138, 1139, 1492, 2031
NmeAIII	GCCGAG	1 cut(s)	1682
NmuCI	GTSAC	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	223
NspI	RCATGY	2 cut(s)	76, 1313
OliI	CACNNNNGTG	1 cut(s)	1599
PaeI	GCATGC	1 cut(s)	76
PaqCI	CACCTGC	1 cut(s)	1085
PasI	CCCWGGG	1 cut(s)	1787
PciI	ACATGT	1 cut(s)	1309
PctI	GAATGC	1 cut(s)	2197
PfeI	GAWTC	6 cut(s)	752, 888, 958, 1112, 1243, 1544
PleI	GAGTC	4 cut(s)	334, 1048, 1913, 1963
PmaCI	CACGTG	1 cut(s)	1294
PmlI	CACGTG	1 cut(s)	1294
PpsI	GAGTC	4 cut(s)	334, 1048, 1913, 1963
Ppu21I	YACGTR	1 cut(s)	1294
PpuMI	RGGWCCY	1 cut(s)	1137
PscI	ACATGT	1 cut(s)	1309
Psp124BI	GAGCTC	1 cut(s)	1628
Psp5II	RGGWCCY	1 cut(s)	1137
Psp6I	CCWGG	2 cut(s)	1452, 1786
PspCI	CACGTG	1 cut(s)	1294
PspFI	CCCAGC	2 cut(s)	2005, 2141
PspGI	CCWGG	2 cut(s)	1452, 1786
PspN4I	GGNNCC	9 cut(s)	51, 155, 550, 655, 699, 1138, 1139, 1492, 2031
PspPI	GGNCC	7 cut(s)	392, 584, 920, 1137, 1445, 1490, 2003
PspPPI	RGGWCCY	1 cut(s)	1137
PstI	CTGCAG	2 cut(s)	369, 1327
PstNI	CAGNNNCTG	2 cut(s)	26, 689
PvuII	CAGCTG	3 cut(s)	632, 900, 908
RsaI	GTAC	4 cut(s)	155, 477, 722, 1576
RsaNI	GTAC	4 cut(s)	154, 476, 721, 1575
RseI	CAYNNNNRTG	3 cut(s)	1107, 1599, 2060
SacI	GAGCTC	1 cut(s)	1628
SaqAI	TTAA	6 cut(s)	492, 561, 1143, 1656, 1764, 2094
Sau3AI	GATC	2 cut(s)	1405, 1714
Sau96I	GGNCC	7 cut(s)	392, 584, 920, 1137, 1445, 1490, 2003
SchI	GAGTC	4 cut(s)	334, 1049, 1914, 1964
ScrFI	CCNGG	3 cut(s)	1454, 1494, 1788
SduI	GDGCHC	4 cut(s)	1102, 1628, 1794, 1895
SfaNI	GCATC	2 cut(s)	1344, 1512
SfcI	CTRYAG	3 cut(s)	365, 1323, 1368
SinI	GGWCC	3 cut(s)	1137, 1445, 1490
SmiMI	CAYNNNNRTG	3 cut(s)	1107, 1599, 2060
SmlI	CTYRAG	2 cut(s)	197, 1619
SmoI	CTYRAG	2 cut(s)	197, 1619
SphI	GCATGC	1 cut(s)	76
SsiI	CCGC	5 cut(s)	53, 306, 519, 1865, 2127
SspMI	CTAG	2 cut(s)	56, 1508
SstI	GAGCTC	1 cut(s)	1628
StyD4I	CCNGG	3 cut(s)	1452, 1492, 1786
StyI	CCWWGG	3 cut(s)	607, 953, 1419
TaaI	ACNGT	6 cut(s)	526, 967, 1077, 1396, 2062, 2114
TaiI	ACGT	2 cut(s)	623, 1296
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	3 cut(s)	55, 1868, 2129
TfiI	GAWTC	6 cut(s)	752, 888, 958, 1112, 1243, 1544
Tru1I	TTAA	6 cut(s)	492, 561, 1143, 1656, 1764, 2094
Tru9I	TTAA	6 cut(s)	492, 561, 1143, 1656, 1764, 2094
TscAI	CASTG	4 cut(s)	21, 784, 1399, 2065
TseFI	GTSAC	1 cut(s)	12
TseI	GCWGC	9 cut(s)	41, 248, 364, 367, 767, 1511, 1610, 1649, 1730
Tsp45I	GTSAC	1 cut(s)	12
TspDTI	ATGAA	8 cut(s)	45, 150, 447, 483, 615, 960, 1104, 1425
TspGWI	ACGGA	1 cut(s)	2151
TspRI	CASTG	4 cut(s)	21, 784, 1399, 2065
VneI	GTGCAC	1 cut(s)	1098
VpaK11BI	GGWCC	3 cut(s)	1137, 1445, 1490
XapI	RAATTY	3 cut(s)	423, 640, 1351
XceI	RCATGY	2 cut(s)	76, 1313
XmiI	GTMKAC	1 cut(s)	2155
XspI	CTAG	2 cut(s)	56, 1508
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.