Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

13816206 .. 13827229

Gene Structure 11024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1071300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3645 bp

ATGGCGATAGACAGCGGAAGCAAGGAGCAGCCGCACAAGGAGCACAGGTCCCGGCAGTCCGGCGCCAAGGCCGAGAAGAAGAAGAAGCCGGACGCCTCCCAAAACGGCAATAAGCGAAACCCTAAGGCTTTCGCTTACCAATCAGCCGGGAAGGCCCAGCGTCTTCACTCTCGCGATGTCGAGAAGCAGCAGCGCCGCCTTCACGTCCCTACCATCGATCGTTCGTACGGTGAGCCGGCTCCGTATGTCGTTCTGGTTCATGGACCTCCCAAGGTTGGGAAGTCTTTGTTGATTAAGTCGCTTGTGAAGCATTATACCAAGCATAATTTACCGGAGGTTCGAGGCCCGATTACCATTGTTTCAGGGAAGCAAAGGCGGGTACAGTTTGTGGAGTGCCCAGATGATATCAATGGTATGATTGATGCCGCAAAGTTTGCAGATTTAGCATTACTTCTTATAGACGGAAGCTACGGTTTTGAAATGGAAACATTTGAATTTCTGAATATATTACAAGTTCATGGTTTCCCAAAGGTTATGGGAGTTCTTACTCACCTTGACAAGTTTAAAGATGTAAAGAAATTGAAGAAAACAAAGCAGCACCTCAAACATCGTTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCTGGTCTCATTCATGGAAAGTATGTCAAACGTGAAATTCACAATCTGGCACGTTTCATATCCGTTATGAAGTTTCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTTTGGTAGATCGTTTTGAAGATGTCACTCCACCTGAAAAAGTGCGTTTGAATAATAAATGCGATAGAAATGTCACACTGTATGGTTATTTGCGGGGATGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGGGATTACAGTTTAGCTGGTATGACAGGATTAGCTGATCCTTGTCCTTTACCCTCAGCTGCCAAAAAGAAGGGACTGCGTGATAAGGAAAAGCTGTTTTATGCACCCATGTCTGGACTTGGGGATCTCCTGTATGATAAAGATGCTGTCTATGTAAACATAAATGACCACTTTGTCCAGTTTTCAAATGCTGATGAAAAGGGCGAAGCAACAAAACAAGGAAAGCCCCAAGATGTGGGTGTGGCTTTGGTAAAATCTCTTCAGAACACAAAATATTCAGTTGATGAAAAGTTAGAAGAGAGCTTCATTAATCTATTTAGCCGGAAGCCTAATTTATTATCGAATGCTCAAAGTGATGGAATAGATACTGATGAATCTAGAGAACAGAATCGTATGATAGAGCCTTTAGAGGAATATCACTGTGGGGAAGTTATCAAAGGTGATGGTTCTGCTGAAGAAAGCAATGCAGAAGATTCTGATGGTTCTGAATCAGAATCTTTAGATAAGAATGAAGCGGCTCATAAAGATGCATCAGATCAAGATGCTACTCTTAAAGATCACTTGAAGGAACATGTTGAGATTCATGATGGAAGGTCAAGGAGAAAAGTTATCTTTAGAAATGACCTTGATCATAACAATATGGAGGATTCAGCTGAAGAGACTGAAGAAGAAGATGATTGTGATGATGACAACAACAATGATACTAATAATCAGGATTCTTCTGGTTCAGAGTCTTCAGCGGAAGATGAAGATTATCATGAAACAGGTGATGAGACAGGAAACATTGCAAAGTGGAAAGAATCTTTGGTGCAAAGGGCTTCATCAAGACAAACTATTAACCTTATGCACCTTGTATATGGGAAATCTACGTCAATGCCAACAACTTCTAGCAACGAAGATCACAATAGTAGTAGCGCAGATGATGAAAGTGACGAAGATGATGACTTTTTTGTGCCAAAAGGAGAAGGAAACAAGAAACATGGAGGAATAGAAGGTGGAAACTGGGATGTCGAGGACTGTTCCAAATTCACAAATTATTCAAATATCAAAGACTGGAAAGAGGAAAAGCTTAGAGAGGGTATTCGTGATCGTTTTGTTACTGGTGATTGGGCGAAAGCTTCTCAAAGAAATCAACCCACAGAAGCTAAAGATGAAGATGATGATGCTTTCTATGGTGACTTTGAAGATTTAGAAACAGGTGAGAAGCATGGTGGGAACCATACAGATGACTTAAGCGTTGGTGCAAACCACAAGGAAGATGATTCGGCCAAAGAGGAGAGGAGGCTGAAAAAGCTAGCTCTTCGTGCAAAGTTTGATGCTCAATATCCTTTTCACTTGAAATATCTTCTTAGTGCATCTGAAGAGGAGCTTGATAATAAACCTGAAGGCAAGTTTGGTCGAGATCAACCCAAAGAAAGTGACTACTTTGACAAGTTGAAGGATGAGATTGAACTTCGGAAGCAAAAGAATATAGCTGAACTCAATGAACTGGATGAGGCCACCCGACTAGAAGTAGAGGGTTTTCGGACAGGGACATACCTACGGCTGGAGGTTCATGATGTCCCTTATGAGATGGTTGAATATTTTGATCCCTGCCATCCTATTTTGGTTGGAGGAATTGGTCTTGGTGAAGAAAATGTCGGATATATGCAGGTCAGGTTAAAGCGGCATAGGTGGCACAAGAAAGTACTTAAGAATAACGATCCCATTATTGTTTCTATTGGGTGGAGGAGATACCAAACAATACCAGTTTATGCTATTGAGGATCGCAATGGAAGGCATCGCATGCTTAAGTACACTCCTGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCTAATACTGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGCACAGTTTAGGATCACAGCAACTGCAGTTGTCCTTGAGTTCAACCATGCATCACGAATAGTGAAGAAACTCAAACTAGTTGGTCACCCCTGCAAGATTTTCAAGAACACTGCCCTTGTGAAGGATATGTTCACCTCGGATCTTGAAATAGCTCGATTTGAAGGTGCTGCTGTTCGAACTGTCAGTGGAATCCGGGGGCAGGTCAAAAAGGCTGCAAAAGAAGAAATGGGTAACCAACCAAAAAAGATGGGTGGACAACCAAAAGAAGGGATTGCTAGGTGCACCTTCGAGGACAAAATTAAGATGAGTGACATTGTTTTTTTGCGTGCTTGGACTCAAGTTGAAGTTCCTCGATTTTACAACCCATTGACAACATCCCTGCAACCTCGCGAAAAGACCTGGCAAGGGATGAAAACTACTGCTGAATTGAGGAGAGAACATAATATTCCTATTCCTGTCAATAAAGATTCACTTTACAAGCCAATTGAAAGGAAGCTGAAGAAGTTCAACCCCTTGGTGATTCCCAAGTCACTGCAAAGTGCTCTGCCATTTTCTTCAAAACCTAAGGATATACCCAGTAGGAAAAGGCCGCTTCTTGAAAATAGAAGAGCTGTTGTCATGGAGCCTCATGAACGTAAAGTTCATACTCTTGTTCAACATCTCGGATTAATACGAAATGAGAAGATAAAGAAGCGCAAGCTAAAAGACGATAAAAAGAGGAAAGAAAATGAAGCGCAGAAAGCCAAAGAAGAGCAATTGTCTAAAAAGCGCCAGAGAGAAGAACGACGGGAGAGATATCGGGTGCAAGACAAAATGAAGAAGAAAATTAGGAGAAGCACAGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1215

Amino Acids

138.94

Weight (kDa)

8.32

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	242 - 315	6.1e-26	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	765 - 1047	4.4e-86	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	887
AasI	GACNNNNNNGTC	1 cut(s)	1076
Acc36I	ACCTGC	3 cut(s)	887, 2545, 2986
AccB1I	GGYRCC	1 cut(s)	62
AccB7I	CCANNNNNTGG	1 cut(s)	1138
AccII	CGCG	2 cut(s)	174, 3186
AclWI	GGATC	7 cut(s)	935, 1035, 2486, 2600, 2676, 2816, 2943
AcoI	YGGCCR	1 cut(s)	2169
AcsI	RAATTY	4 cut(s)	494, 690, 1928, 2779
AcuI	CTGAAG	8 cut(s)	1148, 1377, 1578, 1587, 1623, 2283, 2307, 3314
AcyI	GRCGYC	2 cut(s)	63, 93
AfaI	GTAC	4 cut(s)	227, 381, 2592, 2699
AflII	CTTAAG	3 cut(s)	2134, 2594, 2693
AflIII	ACRYGT	1 cut(s)	1474
AhlI	ACTAGT	1 cut(s)	2872
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	3194
AjuI	GAANNNNNNNTTGG	4 cut(s)	1691, 1723, 2280, 2312
AloI	GAACNNNNNNTCC	2 cut(s)	739, 771
Alw21I	GWGCWC	3 cut(s)	45, 3080, 3340
Alw26I	GTCTC	3 cut(s)	665, 1556, 1670
Alw44I	GTGCAC	1 cut(s)	3076
AlwI	GGATC	7 cut(s)	935, 1035, 2486, 2600, 2676, 2816, 2943
AlwNI	CAGNNNCTG	1 cut(s)	2819
AoxI	GGCC	7 cut(s)	69, 153, 343, 2169, 2400, 2737, 3383
ApaI	GGGCCC	1 cut(s)	2741
ApaLI	GTGCAC	1 cut(s)	3076
ApeKI	GCWGC	7 cut(s)	28, 187, 190, 595, 962, 2963, 3008
ApoI	RAATTY	4 cut(s)	494, 690, 1928, 2779
AseI	ATTAAT	2 cut(s)	1212, 3464
Asp700I	GAANNNNTTC	1 cut(s)	3299
AspLEI	GCGC	6 cut(s)	65, 195, 1820, 3492, 3532, 3567
AspS9I	GGNCC	6 cut(s)	48, 154, 263, 344, 2737, 2738
AsuC2I	CCSGG	3 cut(s)	52, 148, 2990
AsuII	TTCGAA	1 cut(s)	2971
AsuNHI	GCTAGC	1 cut(s)	2197
AvaII	GGWCC	2 cut(s)	48, 263
AxyI	CCTNAGG	2 cut(s)	123, 3360
BaeGI	GKGCMC	3 cut(s)	398, 2741, 3080
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	2741
BarI	GAAGNNNNNNTAC	2 cut(s)	1146, 1178
BbsI	GAAGAC	2 cut(s)	155, 1629
Bbv12I	GWGCWC	3 cut(s)	45, 3080, 3340
BbvCI	CCTCAGC	1 cut(s)	958
BbvI	GCAGC	7 cut(s)	40, 199, 202, 607, 949, 2950, 2995
BccI	CCATC	9 cut(s)	221, 626, 1253, 1340, 1376, 1484, 2470, 2508, 3037
BceAI	ACGGC	2 cut(s)	121, 2462
BciT130I	CCWGG	1 cut(s)	3196
BclI	TGATCA	1 cut(s)	1531
BcnI	CCSGG	3 cut(s)	52, 148, 2990
BcoDI	GTCTC	3 cut(s)	665, 1556, 1670
BcuI	ACTAGT	1 cut(s)	2872
BfaI	CTAG	6 cut(s)	1281, 1791, 2198, 2411, 2873, 3072
BfmI	CTRYAG	1 cut(s)	2820
BfoI	RGCGCY	3 cut(s)	66, 196, 3568
BfrI	CTTAAG	3 cut(s)	2134, 2594, 2693
BfuAI	ACCTGC	3 cut(s)	887, 2545, 2986
BglI	GCCNNNNNGGC	1 cut(s)	152
BmcAI	AGTACT	1 cut(s)	2592
Bme1390I	CCNGG	4 cut(s)	52, 148, 2990, 3196
Bme18I	GGWCC	2 cut(s)	48, 263
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	6 cut(s)	48, 154, 263, 344, 2737, 2738
BmiI	GGNNCC	7 cut(s)	50, 64, 240, 2120, 2738, 2739, 3420
BmrFI	CCNGG	4 cut(s)	52, 148, 2990, 3196
BmrI	ACTGGG	2 cut(s)	1915, 3366
BmtI	GCTAGC	1 cut(s)	2201
BmuI	ACTGGG	2 cut(s)	1915, 3366
BpiI	GAAGAC	2 cut(s)	155, 1629
BplI	GAGNNNNNCTC	2 cut(s)	736, 768
BpmI	CTGGAG	1 cut(s)	2471
Bpu10I	CCTNAGC	1 cut(s)	958
Bpu14I	TTCGAA	1 cut(s)	2971
BpuEI	CTTGAG	2 cut(s)	2852, 3117
BpuMI	CCSGG	3 cut(s)	52, 148, 2990
Bsa29I	ATCGAT	1 cut(s)	216
BsaHI	GRCGYC	2 cut(s)	63, 93
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	5 cut(s)	66, 270, 2931, 2989, 3309
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	8 cut(s)	1081, 1910, 1961, 2008, 2397, 2651, 2764, 3372
Bse21I	CCTNAGG	2 cut(s)	123, 3360
Bse3DI	GCAATG	5 cut(s)	1372, 1686, 2680, 2716, 2733
BseBI	CCWGG	1 cut(s)	3196
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	5 cut(s)	66, 270, 2931, 2989, 3309
BseGI	GGATG	9 cut(s)	730, 754, 866, 1915, 2350, 2401, 2500, 3170, 3210
BseMI	GCAATG	5 cut(s)	1372, 1686, 2680, 2716, 2733
BseMII	CTCAG	1 cut(s)	972
BseNI	ACTGG	8 cut(s)	1081, 1910, 1961, 2008, 2397, 2651, 2764, 3372
BseRI	GAGGAG	5 cut(s)	2192, 2197, 2282, 2647, 3241
BseSI	GKGCMC	3 cut(s)	398, 2741, 3080
BseXI	GCAGC	7 cut(s)	40, 199, 202, 607, 949, 2950, 2995
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	2 cut(s)	174, 3186
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	7 cut(s)	71, 155, 345, 2171, 2402, 2739, 3385
BshNI	GGYRCC	1 cut(s)	62
BshVI	ATCGAT	1 cut(s)	216
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	3 cut(s)	45, 3080, 3340
BsiSI	CCGG	8 cut(s)	52, 60, 89, 147, 236, 332, 1225, 2989
BsiWI	CGTACG	1 cut(s)	225
BslFI	GGGAC	5 cut(s)	34, 191, 990, 2449, 2450
BsmAI	GTCTC	3 cut(s)	665, 1556, 1670
BsmFI	GGGAC	5 cut(s)	34, 191, 990, 2449, 2450
BsmI	GAATGC	1 cut(s)	1252
BsnI	GGCC	7 cut(s)	71, 155, 345, 2171, 2402, 2739, 3385
Bso31I	GGTCTC	1 cut(s)	665
Bsp119I	TTCGAA	1 cut(s)	2971
Bsp120I	GGGCCC	1 cut(s)	2737
Bsp1286I	GDGCHC	5 cut(s)	45, 398, 2741, 3080, 3340
Bsp68I	TCGCGA	2 cut(s)	174, 3186
BspANI	GGCC	7 cut(s)	71, 155, 345, 2171, 2402, 2739, 3385
BspCNI	CTCAG	1 cut(s)	971
BspDI	ATCGAT	1 cut(s)	216
BspFNI	CGCG	2 cut(s)	174, 3186
BspHI	TCATGA	4 cut(s)	1486, 1660, 2458, 3424
BspLI	GGNNCC	7 cut(s)	50, 64, 240, 2120, 2738, 2739, 3420
BspMAI	CTGCAG	1 cut(s)	2824
BspMI	ACCTGC	3 cut(s)	887, 2545, 2986
BspOI	GCTAGC	1 cut(s)	2201
BspPI	GGATC	7 cut(s)	935, 1035, 2486, 2600, 2676, 2816, 2943
BspQI	GCTCTTC	3 cut(s)	2208, 3397, 3540
BspT104I	TTCGAA	1 cut(s)	2971
BspT107I	GGYRCC	1 cut(s)	62
BspTI	CTTAAG	3 cut(s)	2134, 2594, 2693
BspTNI	GGTCTC	1 cut(s)	665
BsrDI	GCAATG	5 cut(s)	1372, 1686, 2680, 2716, 2733
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	8 cut(s)	1081, 1910, 1961, 2008, 2397, 2651, 2764, 3372
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	5 cut(s)	66, 270, 2931, 2989, 3309
BssNI	GRCGYC	2 cut(s)	63, 93
BssT1I	CCWWGG	3 cut(s)	66, 270, 3309
Bst2UI	CCWGG	1 cut(s)	3196
Bst4CI	ACNGT	9 cut(s)	230, 384, 473, 843, 914, 1325, 1922, 2802, 2977
Bst6I	CTCTTC	7 cut(s)	1167, 1194, 1554, 2208, 2259, 3397, 3540
BstACI	GRCGYC	2 cut(s)	63, 93
BstAFI	CTTAAG	3 cut(s)	2134, 2594, 2693
BstAPI	GCANNNNNTGC	2 cut(s)	434, 2689
BstBI	TTCGAA	1 cut(s)	2971
BstC8I	GCNNGC	5 cut(s)	237, 2199, 2690, 3123, 3494
BstDEI	CTNAG	5 cut(s)	123, 958, 1973, 2252, 3360
BstEII	GGTNACC	2 cut(s)	2879, 3026
BstENI	CCTNNNNNAGG	1 cut(s)	2915
BstF5I	GGATG	9 cut(s)	730, 754, 866, 1915, 2350, 2401, 2500, 3170, 3210
BstFNI	CGCG	2 cut(s)	174, 3186
BstH2I	RGCGCY	3 cut(s)	66, 196, 3568
BstHHI	GCGC	6 cut(s)	65, 195, 1820, 3492, 3532, 3567
BstMAI	GTCTC	3 cut(s)	665, 1556, 1670
BstMCI	CGRYCG	1 cut(s)	220
BstNI	CCWGG	1 cut(s)	3196
BstNSI	RCATGY	3 cut(s)	1478, 2692, 2716
BstPI	GGTNACC	2 cut(s)	2879, 3026
BstSCI	CCNGG	4 cut(s)	50, 146, 2988, 3194
BstSFI	CTRYAG	1 cut(s)	2820
BstSLI	GKGCMC	3 cut(s)	398, 2741, 3080
BstUI	CGCG	2 cut(s)	174, 3186
BstV1I	GCAGC	7 cut(s)	40, 199, 202, 607, 949, 2950, 2995
BstV2I	GAAGAC	2 cut(s)	155, 1629
BstX2I	RGATCY	2 cut(s)	1027, 2935
BstYI	RGATCY	2 cut(s)	1027, 2935
Bsu15I	ATCGAT	1 cut(s)	216
Bsu36I	CCTNAGG	2 cut(s)	123, 3360
BsuRI	GGCC	7 cut(s)	71, 155, 345, 2171, 2402, 2739, 3385
BsuTUI	ATCGAT	1 cut(s)	216
BtgZI	GCGATG	2 cut(s)	189, 2669
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	9 cut(s)	730, 754, 866, 1915, 2350, 2401, 2500, 3170, 3210
BtsI	GCAGTG	2 cut(s)	2904, 3326
BtsIMutI	CAGTG	5 cut(s)	839, 1321, 2904, 2986, 3326
BtuMI	TCGCGA	2 cut(s)	174, 3186
BveI	ACCTGC	3 cut(s)	887, 2545, 2986
Cac8I	GCNNGC	5 cut(s)	237, 2199, 2690, 3123, 3494
CaiI	CAGNNNCTG	1 cut(s)	2819
CciI	TCATGA	4 cut(s)	1486, 1660, 2458, 3424
CfoI	GCGC	6 cut(s)	65, 195, 1820, 3492, 3532, 3567
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	6 cut(s)	48, 154, 263, 344, 2737, 2738
ClaI	ATCGAT	1 cut(s)	216
CseI	GACGC	2 cut(s)	101, 149
Csp6I	GTAC	4 cut(s)	226, 380, 2591, 2698
CviQI	GTAC	4 cut(s)	226, 380, 2591, 2698
DdeI	CTNAG	5 cut(s)	123, 958, 1973, 2252, 3360
DinI	GGCGCC	1 cut(s)	64
DraI	TTTAAA	1 cut(s)	565
DrdI	GACNNNNNNGTC	1 cut(s)	1076
DseDI	GACNNNNNNGTC	1 cut(s)	1076
EaeI	YGGCCR	1 cut(s)	2169
Eam1104I	CTCTTC	7 cut(s)	1167, 1194, 1554, 2208, 2259, 3397, 3540
EarI	CTCTTC	7 cut(s)	1167, 1194, 1554, 2208, 2259, 3397, 3540
Eco130I	CCWWGG	3 cut(s)	66, 270, 3309
Eco24I	GRGCYC	1 cut(s)	2741
Eco31I	GGTCTC	1 cut(s)	665
Eco32I	GATATC	2 cut(s)	406, 3593
Eco47I	GGWCC	2 cut(s)	48, 263
Eco57I	CTGAAG	8 cut(s)	1148, 1377, 1578, 1587, 1623, 2283, 2307, 3314
Eco81I	CCTNAGG	2 cut(s)	123, 3360
Eco91I	GGTNACC	2 cut(s)	2879, 3026
EcoNI	CCTNNNNNAGG	1 cut(s)	2915
EcoO109I	RGGNCCY	3 cut(s)	48, 2737, 2738
EcoO65I	GGTNACC	2 cut(s)	2879, 3026
EcoRII	CCWGG	1 cut(s)	3194
EcoRV	GATATC	2 cut(s)	406, 3593
EcoT14I	CCWWGG	3 cut(s)	66, 270, 3309
EcoT22I	ATGCAT	3 cut(s)	1435, 2718, 2848
EcoT38I	GRGCYC	1 cut(s)	2741
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
ErhI	CCWWGG	3 cut(s)	66, 270, 3309
FalI	AAGNNNNNCTT	4 cut(s)	2256, 2288, 3252, 3284
FaqI	GGGAC	5 cut(s)	34, 191, 990, 2449, 2450
FauI	CCCGC	2 cut(s)	369, 849
FbaI	TGATCA	1 cut(s)	1531
FokI	GGATG	9 cut(s)	717, 741, 873, 1922, 2357, 2408, 2487, 3157, 3217
FriOI	GRGCYC	1 cut(s)	2741
FspBI	CTAG	6 cut(s)	1281, 1791, 2198, 2411, 2873, 3072
GlaI	GCGC	6 cut(s)	64, 194, 1819, 3491, 3531, 3566
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	2471
HaeII	RGCGCY	3 cut(s)	66, 196, 3568
HaeIII	GGCC	7 cut(s)	71, 155, 345, 2171, 2402, 2739, 3385
HapII	CCGG	8 cut(s)	52, 60, 89, 147, 236, 332, 1225, 2989
HgaI	GACGC	2 cut(s)	101, 149
HhaI	GCGC	6 cut(s)	65, 195, 1820, 3492, 3532, 3567
Hin1I	GRCGYC	2 cut(s)	63, 93
Hin6I	GCGC	6 cut(s)	63, 193, 1818, 3490, 3530, 3565
HinP1I	GCGC	6 cut(s)	63, 193, 1818, 3490, 3530, 3565
HindIII	AAGCTT	2 cut(s)	1970, 2019
HpaII	CCGG	8 cut(s)	52, 60, 89, 147, 236, 332, 1225, 2989
Hpy166II	GTNNAC	5 cut(s)	1060, 2700, 2928, 3050, 3078
Hpy8I	GTNNAC	5 cut(s)	1060, 2700, 2928, 3050, 3078
Hpy99I	CGWCG	1 cut(s)	3585
HpyCH4III	ACNGT	9 cut(s)	230, 384, 473, 843, 914, 1325, 1922, 2802, 2977
HpyCH4IV	ACGT	5 cut(s)	204, 685, 706, 1772, 3430
HpyF3I	CTNAG	5 cut(s)	123, 958, 1973, 2252, 3360
HpySE526I	ACGT	5 cut(s)	204, 685, 706, 1772, 3430
Hsp92I	GRCGYC	2 cut(s)	63, 93
HspAI	GCGC	6 cut(s)	63, 193, 1818, 3490, 3530, 3565
KasI	GGCGCC	1 cut(s)	62
KroI	GCCGGC	1 cut(s)	235
KroNI	GCCGGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	1531
LguI	GCTCTTC	3 cut(s)	2208, 3397, 3540
LmnI	GCTCC	6 cut(s)	25, 40, 244, 635, 2269, 3418
Lsp1109I	GCAGC	7 cut(s)	40, 199, 202, 607, 949, 2950, 2995
MaeI	CTAG	6 cut(s)	1281, 1791, 2198, 2411, 2873, 3072
MaeII	ACGT	5 cut(s)	204, 685, 706, 1772, 3430
MfeI	CAATTG	2 cut(s)	3279, 3551
MflI	RGATCY	2 cut(s)	1027, 2935
MhlI	GDGCHC	5 cut(s)	45, 398, 2741, 3080, 3340
Mly113I	GGCGCC	1 cut(s)	63
MlyI	GAGTC	2 cut(s)	1643, 3124
MmeI	TCCRAC	2 cut(s)	2494, 2524
Mph1103I	ATGCAT	3 cut(s)	1435, 2718, 2848
MroNI	GCCGGC	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	3299
MslI	CAYNNNNRTG	3 cut(s)	759, 1428, 2127
MspA1I	CMGCKG	4 cut(s)	15, 962, 1556, 1643
MspCI	CTTAAG	3 cut(s)	2134, 2594, 2693
MspI	CCGG	8 cut(s)	52, 60, 89, 147, 236, 332, 1225, 2989
MspR9I	CCNGG	4 cut(s)	52, 148, 2990, 3196
MunI	CAATTG	2 cut(s)	3279, 3551
Mva1269I	GAATGC	1 cut(s)	1252
MvaI	CCWGG	1 cut(s)	3196
MvnI	CGCG	2 cut(s)	174, 3186
NaeI	GCCGGC	1 cut(s)	237
NarI	GGCGCC	1 cut(s)	63
NciI	CCSGG	3 cut(s)	52, 148, 2990
NgoMIV	GCCGGC	1 cut(s)	235
NheI	GCTAGC	1 cut(s)	2197
NlaIV	GGNNCC	7 cut(s)	50, 64, 240, 2120, 2738, 2739, 3420
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	8 cut(s)	787, 835, 1832, 2078, 2321, 2879, 3104, 3324
NruI	TCGCGA	2 cut(s)	174, 3186
NsiI	ATGCAT	3 cut(s)	1435, 2718, 2848
NspI	RCATGY	3 cut(s)	1478, 2692, 2716
NspV	TTCGAA	1 cut(s)	2971
PaeI	GCATGC	1 cut(s)	2692
PagI	TCATGA	4 cut(s)	1486, 1660, 2458, 3424
PaqCI	CACCTGC	1 cut(s)	887
PciI	ACATGT	1 cut(s)	1474
PciSI	GCTCTTC	3 cut(s)	2208, 3397, 3540
PctI	GAATGC	1 cut(s)	1252
PdiI	GCCGGC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	3299
Pfl23II	CGTACG	1 cut(s)	225
PflMI	CCANNNNNTGG	1 cut(s)	1138
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	2 cut(s)	1642, 3124
PluTI	GGCGCC	1 cut(s)	66
PpsI	GAGTC	2 cut(s)	1642, 3124
PpuMI	RGGWCCY	1 cut(s)	48
PscI	ACATGT	1 cut(s)	1474
PshBI	ATTAAT	2 cut(s)	1212, 3464
Psp5II	RGGWCCY	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	3194
PspEI	GGTNACC	2 cut(s)	2879, 3026
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	3194
PspLI	CGTACG	1 cut(s)	225
PspN4I	GGNNCC	7 cut(s)	50, 64, 240, 2120, 2738, 2739, 3420
PspOMI	GGGCCC	1 cut(s)	2737
PspPI	GGNCC	6 cut(s)	48, 154, 263, 344, 2737, 2738
PspPPI	RGGWCCY	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	2824
PstNI	CAGNNNCTG	1 cut(s)	2819
PsuI	RGATCY	2 cut(s)	1027, 2935
PvuI	CGATCG	1 cut(s)	220
PvuII	CAGCTG	2 cut(s)	962, 1556
RruI	TCGCGA	2 cut(s)	174, 3186
RsaI	GTAC	4 cut(s)	227, 381, 2592, 2699
RsaNI	GTAC	4 cut(s)	226, 380, 2591, 2698
RseI	CAYNNNNRTG	3 cut(s)	759, 1428, 2127
SapI	GCTCTTC	3 cut(s)	2208, 3397, 3540
Sau96I	GGNCC	6 cut(s)	48, 154, 263, 344, 2737, 2738
ScaI	AGTACT	1 cut(s)	2592
SchI	GAGTC	2 cut(s)	1643, 3124
ScrFI	CCNGG	4 cut(s)	52, 148, 2990, 3196
SduI	GDGCHC	5 cut(s)	45, 398, 2741, 3080, 3340
SfcI	CTRYAG	1 cut(s)	2820
SfoI	GGCGCC	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	2971
SinI	GGWCC	2 cut(s)	48, 263
SmiMI	CAYNNNNRTG	3 cut(s)	759, 1428, 2127
SmlI	CTYRAG	5 cut(s)	2134, 2594, 2693, 2831, 3132
SmoI	CTYRAG	5 cut(s)	2134, 2594, 2693, 2831, 3132
SpeI	ACTAGT	1 cut(s)	2872
SphI	GCATGC	1 cut(s)	2692
SspDI	GGCGCC	1 cut(s)	62
SspI	AATATT	3 cut(s)	1178, 2486, 3241
SspMI	CTAG	6 cut(s)	1281, 1791, 2198, 2411, 2873, 3072
StyD4I	CCNGG	4 cut(s)	50, 146, 2988, 3194
StyI	CCWWGG	3 cut(s)	66, 270, 3309
TaaI	ACNGT	9 cut(s)	230, 384, 473, 843, 914, 1325, 1922, 2802, 2977
TaiI	ACGT	5 cut(s)	207, 688, 709, 1775, 3433
TatI	WGTACW	2 cut(s)	2590, 2697
TauI	GCSGC	6 cut(s)	34, 198, 428, 1421, 2572, 3388
TscAI	CASTG	5 cut(s)	846, 1328, 2911, 2986, 3333
TseFI	GTSAC	8 cut(s)	787, 835, 1832, 2078, 2321, 2879, 3104, 3324
TseI	GCWGC	7 cut(s)	28, 187, 190, 595, 962, 2963, 3008
Tsp45I	GTSAC	8 cut(s)	787, 835, 1832, 2078, 2321, 2879, 3104, 3324
TspGWI	ACGGA	3 cut(s)	231, 477, 706
TspRI	CASTG	5 cut(s)	846, 1328, 2911, 2986, 3333
Van91I	CCANNNNNTGG	1 cut(s)	1138
Vha464I	CTTAAG	3 cut(s)	2134, 2594, 2693
VneI	GTGCAC	1 cut(s)	3076
VpaK11BI	GGWCC	2 cut(s)	48, 263
VspI	ATTAAT	2 cut(s)	1212, 3464
XagI	CCTNNNNNAGG	1 cut(s)	2915
XapI	RAATTY	4 cut(s)	494, 690, 1928, 2779
XbaI	TCTAGA	1 cut(s)	1280
XceI	RCATGY	3 cut(s)	1478, 2692, 2716
XmnI	GAANNNNTTC	1 cut(s)	3299
XspI	CTAG	6 cut(s)	1281, 1791, 2198, 2411, 2873, 3072
ZrmI	AGTACT	1 cut(s)	2592
Zsp2I	ATGCAT	3 cut(s)	1435, 2718, 2848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.