Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

53944301 .. 53954542

Gene Structure 10242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG360700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3693 bp

ATGGGCATGATAGATAGTGGAAGTATGGAGCAGTCGCACAAGGCACACAGGTCCCGGCAGTCGGGTTCCAAGGCGGCCGATAAGAAGAAGCCCCAAAAAGATTCGAAGAAGCAAAACCCCAAGGCATTCGCTTTCAGCTCAACTGTCAAAGCCAAGCGTCTCCAGTCTCGTGCCGTCGAGAAAGAGCAGCGACGGCTTCATGTTCCGACCATTGATCGCTCCTACGGCGAACAGCCTCCTTTTGTTGTTCTCGTCCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGGAGGTGAAAGGCCCCATTACCATTGTATCAGGGAAGCAGAGGCGGGTTCAGTTTGTGGAGTGCCCCAATGATATCAATGGTATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTTCTTATAGATGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCAAAGATGCAAAGAAACTGAGGAAAACAAAGCAGCATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATGTCACTCCCCCTGAAAAAGTGCGCTTGAATAATAAATGTGATAGAAATGTCACACTTTATGGTTATTTGCGGGGGTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTACAGTGTCGCTGGTATGACAGGCTTAGCTGATCCCTGTCCTTTACCATCTGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCTATGTCTGGACTTGGGGATCTCCTGTATGACAAAGATGCTGTCTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAGGATGAAAAGGAGGAAGCAACGAACAAAGGAGAGCTTGAGGATGTGGGTGTGACCATGGTTAAAAGTCTTCAAAACCCAAAATATTCGCTTGATGAAAAGTTGGAGCAGAGCTTCATTAACTTTTATATCCAGAAACCTAAATTGGAATCTCAACATGATGAAAAAGATCTTGATGAATCCAGAAAACGCATTCGTATGATAGAGCCTTTAGAGGAATATCAGTTTGGGGAAACAATGAAAGCTGGGGGTTCTGGTCAAGAAAGTAATGTTGAGGATATTGATGGCTCAGAATCAAAATCTTATCAGAATGATGCTGCTCGTAATGTTGCACTAACAAAAAGTGATTCTAGTGGATCTGATAGAGAAAATGGTGATGTATCAGATCAAGATGTTAACCTTAAAGATCACTTGAAGGAACATGTTGAGTTTCATGATGGAAGGTCAAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGAGGATTCAGAAGATGATGACGACGGTGGCGATAATGATGCAGATAATCATACCTCTTCTGGTTCAGAGTCTTCAGAGGAAGATAGAGAAATAGATGAGACAGATGATGATGTGGGAAACATAGCAAAGTGGAAGGAGTCTTTGGCAGAACGGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCATCAGTTTCAACTAAAGCCAGTGAAGAACAAGACAGTAGTGAGGAGGAAAGTGATGGAGATGACTTTTTTAAGCCAAAAGGAGACGGAATTAAGAAACATAGAGTAGAAGCAGAAAATTGGAATGTTGAGGATTCTTCCAAATTTACAAATCATTCAATCAAGGACTGGAATGATAAAAAGCTTATAGAGAGTGTGCGCGATCGCTTTGTCACTGGTGATTGGTCGAAGGCTGCTAAAAGAAATCAAGACACAGAGGCAACATTTGAAGATGAAGATGCTGTCTTTGGTGACTTCGAAGATTTAGAAACGGGTGAGAGGCATGATGGATATCATACAAATGAGACGAGAAAAGTTGCAAACAACAAGAAAGCTGGCTTAGATGAAGAGGAGCGGAGGCTCAAAAAGCTTGCTCTTCGTGCCAAGTTTGATGCTCAATATCCTTTTGACACCAAAGACGGAATTTCTTTTGTGACCTTAATATTATCTACATATGATGAACCTGAAACAAGTGATGAGGAACCTGATGATACACATGTAAGCCAGTTTGGACGAGATCGAGCTAAAGAAAGTGGCTATGTTGACAAGCTGAAGGAGGAGATTGAACTCCGAAAACAAATGAATATAGCCGAACTCAATGACCTTGATGAGGACATCCGATTAGAGGTTGAGGGTTTCCGGACAGGGACTTACCTTCGGTTGGAAGTTCATGATATTCCTTGTGAGATGGTTGAATATTTTGATCCCTGCCAGCCTGTTTTGGTTGGAGGAATTGGTCTTGGGGAAGAAAGCACTGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTGCTAAAGACCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCTGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTATACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCCAATACTGGTGTGGTTGCTTTCCAGAATTTATCAAACAATCAGGCAACATTTAGGATCACCGCCACGGCAGTTGTGCTTGAGTTCAACCATGCATCGCGAATAGTGAAGAAACTCAAACTAGTTGGTTACCCTTGCAAGATATTCAAGAATACAGCACTTATAAAAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCTGTTCGAACAGTCAGTGGCATCCGGGGGCAGGTGAAAAAGGCTGCAAAAGAAGAAATTGGTAACCAACCGAAAAAGAAGGGTGGACAACCAAAAGAAGGAATTGTTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTGTTTTTGCGCGCTTGGACTCAAGTTGATGTTCCTTGCTTTTACAACCCATTAACCACATCTCTGCAACCCCGAGCTCTGACCTGGCGAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGAACGCAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCAATTGAAAGGAAGCAGAGGAAGTTCAACCCACTGGTGATTCCCAAAGCAGTACAAGCAAGTCTTCCATTTAAATCAAAGCCTAAGGATACACCGAATAGAAGAAAGCAACTTCTTGAGGATAGAAGAGCTGTTGTGAGGGAGCCTCATGAACAGAAAATTCATGCTCTGCTTCAAAATCTTCGGTTAATCAAATCTGAGAAGTTAAAGAAGCGCAAGATAAAGGATGAGAAAAAAAGAAAAGAAATTGAAGCACAGAAAGCCAAAGATGAGCAGTTGACAAGAAAGCGCCAGAGAGAAGAACGACGAGAGAGATACCGGGTGCAAGACAAAGCTCAGAAGAAAATGAGGAGACACGCGGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1230

Amino Acids

141.25

Weight (kDa)

8.4

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	241 - 314	3.2e-26	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	779 - 1063	7.5e-84	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2963
AarI	CACCTGC	2 cut(s)	884, 3034
Acc36I	ACCTGC	2 cut(s)	884, 3034
AccBSI	CCGCTC	1 cut(s)	2191
AccI	GTMKAC	1 cut(s)	2747
AccII	CGCG	4 cut(s)	1998, 2899, 3171, 3683
AccIII	TCCGGA	1 cut(s)	2475
AciI	CCGC	8 cut(s)	74, 373, 423, 853, 2191, 2617, 2862, 3683
AclWI	GGATC	5 cut(s)	932, 1032, 1453, 2534, 2864
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	5 cut(s)	428, 1940, 2259, 2827, 3483
AcuI	CTGAAG	2 cut(s)	1650, 2408
AfaI	GTAC	1 cut(s)	3378
AflII	CTTAAG	1 cut(s)	2741
AflIII	ACRYGT	2 cut(s)	1510, 2332
AhlI	ACTAGT	1 cut(s)	2920
AjnI	CCWGG	3 cut(s)	1089, 2606, 3242
AjuI	GAANNNNNNNTTGG	6 cut(s)	1217, 1249, 1299, 1331, 1718, 1750
AloI	GAACNNNNNNTCC	2 cut(s)	736, 768
Alw21I	GWGCWC	2 cut(s)	3128, 3238
Alw26I	GTCTC	7 cut(s)	164, 171, 1685, 1750, 1875, 2135, 3670
Alw44I	GTGCAC	1 cut(s)	3124
AlwI	GGATC	5 cut(s)	932, 1032, 1453, 2534, 2864
Ama87I	CYCGRG	1 cut(s)	3231
Aor13HI	TCCGGA	1 cut(s)	2475
AoxI	GGCC	4 cut(s)	75, 340, 2604, 2785
ApaI	GGGCCC	1 cut(s)	2789
ApaLI	GTGCAC	1 cut(s)	3124
ApeKI	GCWGC	7 cut(s)	187, 592, 959, 976, 1406, 2030, 3056
ApoI	RAATTY	5 cut(s)	428, 1940, 2259, 2827, 3483
ArsI	GACNNNNNNTTYG	2 cut(s)	1032, 1064
AsiSI	GCGATCGC	1 cut(s)	2002
AspLEI	GCGC	6 cut(s)	807, 1998, 3171, 3173, 3540, 3615
AspS9I	GGNCC	5 cut(s)	51, 260, 341, 2785, 2786
AsuC2I	CCSGG	3 cut(s)	55, 3038, 3644
AsuII	TTCGAA	3 cut(s)	104, 2094, 3019
AvaI	CYCGRG	1 cut(s)	3231
AvaII	GGWCC	2 cut(s)	51, 260
AxyI	CCTNAGG	1 cut(s)	3408
BaeGI	GKGCMC	3 cut(s)	395, 2789, 3128
BaeI	ACNNNNGTAYC	4 cut(s)	339, 372, 2319, 2352
BanII	GRGCYC	2 cut(s)	2789, 3238
BauI	CACGAG	1 cut(s)	168
BbsI	GAAGAC	3 cut(s)	1151, 1656, 3380
Bbv12I	GWGCWC	2 cut(s)	3128, 3238
BbvI	GCAGC	7 cut(s)	199, 604, 946, 963, 1393, 2017, 3043
BceAI	ACGGC	4 cut(s)	158, 209, 241, 2883
BcgI	CGANNNNNNTGC	2 cut(s)	1613, 1647
BciT130I	CCWGG	3 cut(s)	1091, 2608, 3244
BciVI	GTATCC	2 cut(s)	2588, 3406
BclI	TGATCA	2 cut(s)	288, 1066
BcnI	CCSGG	3 cut(s)	55, 3038, 3644
BcoDI	GTCTC	7 cut(s)	164, 171, 1685, 1750, 1875, 2135, 3670
BcuI	ACTAGT	1 cut(s)	2920
BfaI	CTAG	3 cut(s)	764, 1440, 2921
BfmI	CTRYAG	1 cut(s)	3261
BfoI	RGCGCY	1 cut(s)	3616
BfrI	CTTAAG	1 cut(s)	2741
BfuAI	ACCTGC	2 cut(s)	884, 3034
BfuI	GTATCC	2 cut(s)	2588, 3406
BglII	AGATCT	2 cut(s)	1258, 2983
BlpI	GCTNAGC	1 cut(s)	931
Bme1390I	CCNGG	6 cut(s)	55, 1091, 2608, 3038, 3244, 3644
Bme18I	GGWCC	2 cut(s)	51, 260
BmeT110I	CYCGRG	1 cut(s)	3231
BmgT120I	GGNCC	5 cut(s)	51, 260, 341, 2785, 2786
BmiI	GGNNCC	7 cut(s)	53, 67, 343, 2319, 2786, 2787, 3468
BmrFI	CCNGG	6 cut(s)	55, 1091, 2608, 3038, 3244, 3644
BpiI	GAAGAC	3 cut(s)	1151, 1656, 3380
BplI	GAGNNNNNCTC	4 cut(s)	733, 765, 3454, 3486
BpmI	CTGGAG	2 cut(s)	146, 2736
Bpu1102I	GCTNAGC	1 cut(s)	931
Bpu14I	TTCGAA	3 cut(s)	104, 2094, 3019
BpuEI	CTTGAG	4 cut(s)	1148, 2900, 3165, 3461
BpuMI	CCSGG	3 cut(s)	55, 3038, 3644
BsaBI	GATNNNNATC	1 cut(s)	2127
BsaJI	CCNNGG	8 cut(s)	69, 120, 256, 267, 514, 1146, 2865, 3037
BsaWI	WCCGGW	1 cut(s)	2475
Bse1I	ACTGG	9 cut(s)	163, 1818, 1970, 2017, 2341, 2596, 2649, 2812, 3363
Bse21I	CCTNAGG	1 cut(s)	3408
Bse3DI	GCAATG	4 cut(s)	443, 2728, 2764, 2781
Bse8I	GATNNNNATC	1 cut(s)	2127
BseAI	TCCGGA	1 cut(s)	2475
BseBI	CCWGG	3 cut(s)	1091, 2608, 3244
BseDI	CCNNGG	8 cut(s)	69, 120, 256, 267, 514, 1146, 2865, 3037
BseGI	GGATG	8 cut(s)	727, 751, 1099, 1138, 2451, 3033, 3258, 3556
BseJI	GATNNNNATC	1 cut(s)	2127
BseMI	GCAATG	4 cut(s)	443, 2728, 2764, 2781
BseMII	CTCAG	6 cut(s)	569, 1392, 2994, 3258, 3513, 3674
BseNI	ACTGG	9 cut(s)	163, 1818, 1970, 2017, 2341, 2596, 2649, 2812, 3363
BsePI	GCGCGC	1 cut(s)	3169
BseRI	GAGGAG	5 cut(s)	1856, 2201, 2408, 3289, 3688
BseSI	GKGCMC	3 cut(s)	395, 2789, 3128
BseX3I	CGGCCG	1 cut(s)	75
BseXI	GCAGC	7 cut(s)	199, 604, 946, 963, 1393, 2017, 3043
BseYI	CCCAGC	1 cut(s)	1334
Bsh1236I	CGCG	4 cut(s)	1998, 2899, 3171, 3683
Bsh1285I	CGRYCG	2 cut(s)	78, 2002
BshFI	GGCC	4 cut(s)	77, 342, 2606, 2787
BsiEI	CGRYCG	2 cut(s)	78, 2002
BsiHKAI	GWGCWC	2 cut(s)	3128, 3238
BsiHKCI	CYCGRG	1 cut(s)	3231
BsiSI	CCGG	4 cut(s)	55, 2476, 3037, 3643
BslFI	GGGAC	3 cut(s)	37, 280, 2497
BsmAI	GTCTC	7 cut(s)	164, 171, 1685, 1750, 1875, 2135, 3670
BsmBI	CGTCTC	3 cut(s)	164, 1875, 2135
BsmFI	GGGAC	3 cut(s)	37, 280, 2497
BsmI	GAATGC	2 cut(s)	125, 1281
BsnI	GGCC	4 cut(s)	77, 342, 2606, 2787
BsoBI	CYCGRG	1 cut(s)	3231
Bsp119I	TTCGAA	3 cut(s)	104, 2094, 3019
Bsp120I	GGGCCC	1 cut(s)	2785
Bsp1286I	GDGCHC	4 cut(s)	395, 2789, 3128, 3238
Bsp13I	TCCGGA	1 cut(s)	2475
Bsp1720I	GCTNAGC	1 cut(s)	931
Bsp19I	CCATGG	3 cut(s)	256, 514, 1146
Bsp68I	TCGCGA	1 cut(s)	2899
BspACI	CCGC	8 cut(s)	74, 373, 423, 853, 2191, 2617, 2862, 3683
BspANI	GGCC	4 cut(s)	77, 342, 2606, 2787
BspCNI	CTCAG	6 cut(s)	570, 1391, 2993, 3259, 3514, 3673
BspEI	TCCGGA	1 cut(s)	2475
BspFNI	CGCG	4 cut(s)	1998, 2899, 3171, 3683
BspHI	TCATGA	4 cut(s)	664, 1522, 2506, 3472
BspLI	GGNNCC	7 cut(s)	53, 67, 343, 2319, 2786, 2787, 3468
BspMI	ACCTGC	2 cut(s)	884, 3034
BspPI	GGATC	5 cut(s)	932, 1032, 1453, 2534, 2864
BspQI	GCTCTTC	2 cut(s)	2217, 3445
BspT104I	TTCGAA	3 cut(s)	104, 2094, 3019
BspTI	CTTAAG	1 cut(s)	2741
BsrBI	CCGCTC	1 cut(s)	2191
BsrDI	GCAATG	4 cut(s)	443, 2728, 2764, 2781
BsrI	ACTGG	9 cut(s)	163, 1818, 1970, 2017, 2341, 2596, 2649, 2812, 3363
BssECI	CCNNGG	8 cut(s)	69, 120, 256, 267, 514, 1146, 2865, 3037
BssHII	GCGCGC	1 cut(s)	3169
BssNAI	GTATAC	1 cut(s)	2748
BssSI	CACGAG	1 cut(s)	168
BssT1I	CCWWGG	6 cut(s)	69, 120, 256, 267, 514, 1146
Bst1107I	GTATAC	1 cut(s)	2748
Bst2BI	CACGAG	1 cut(s)	168
Bst2UI	CCWGG	3 cut(s)	1091, 2608, 3244
Bst4CI	ACNGT	6 cut(s)	145, 911, 1619, 1835, 3025, 3262
Bst6I	CTCTTC	5 cut(s)	1587, 1654, 2178, 2217, 3445
BstAFI	CTTAAG	1 cut(s)	2741
BstAPI	GCANNNNNTGC	2 cut(s)	431, 2737
BstBI	TTCGAA	3 cut(s)	104, 2094, 3019
BstC8I	GCNNGC	6 cut(s)	2173, 2208, 2549, 2604, 2738, 3171
BstDEI	CTNAG	9 cut(s)	578, 931, 1378, 2176, 2980, 3267, 3408, 3522, 3660
BstDSI	CCRYGG	4 cut(s)	256, 514, 1146, 2865
BstEII	GGTNACC	2 cut(s)	2927, 3074
BstENI	CCTNNNNNAGG	1 cut(s)	2444
BstF5I	GGATG	8 cut(s)	727, 751, 1099, 1138, 2451, 3033, 3258, 3556
BstFNI	CGCG	4 cut(s)	1998, 2899, 3171, 3683
BstH2I	RGCGCY	1 cut(s)	3616
BstHHI	GCGC	6 cut(s)	807, 1998, 3171, 3173, 3540, 3615
BstMAI	GTCTC	7 cut(s)	164, 171, 1685, 1750, 1875, 2135, 3670
BstMCI	CGRYCG	2 cut(s)	78, 2002
BstNI	CCWGG	3 cut(s)	1091, 2608, 3244
BstNSI	RCATGY	5 cut(s)	1514, 2336, 2602, 2740, 2764
BstPI	GGTNACC	2 cut(s)	2927, 3074
BstSCI	CCNGG	6 cut(s)	53, 1089, 2606, 3036, 3242, 3642
BstSFI	CTRYAG	1 cut(s)	3261
BstSLI	GKGCMC	3 cut(s)	395, 2789, 3128
BstUI	CGCG	4 cut(s)	1998, 2899, 3171, 3683
BstV1I	GCAGC	7 cut(s)	199, 604, 946, 963, 1393, 2017, 3043
BstV2I	GAAGAC	3 cut(s)	1151, 1656, 3380
BstX2I	RGATCY	4 cut(s)	1024, 1258, 1445, 2983
BstYI	RGATCY	4 cut(s)	1024, 1258, 1445, 2983
BstZ17I	GTATAC	1 cut(s)	2748
BstZI	CGGCCG	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	3408
BsuI	GTATCC	2 cut(s)	2588, 3406
BsuRI	GGCC	4 cut(s)	77, 342, 2606, 2787
BtgI	CCRYGG	4 cut(s)	256, 514, 1146, 2865
BtgZI	GCGATG	2 cut(s)	2717, 2880
BtsCI	GGATG	8 cut(s)	727, 751, 1099, 1138, 2451, 3033, 3258, 3556
BtsIMutI	CAGTG	7 cut(s)	916, 1825, 2010, 2589, 2656, 3034, 3356
BtuMI	TCGCGA	1 cut(s)	2899
BveI	ACCTGC	2 cut(s)	884, 3034
Cac8I	GCNNGC	6 cut(s)	2173, 2208, 2549, 2604, 2738, 3171
CciI	TCATGA	4 cut(s)	664, 1522, 2506, 3472
CfoI	GCGC	6 cut(s)	807, 1998, 3171, 3173, 3540, 3615
Cfr13I	GGNCC	5 cut(s)	51, 260, 341, 2785, 2786
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	3377
CspCI	CAANNNNNGTGG	2 cut(s)	2854, 2889
CviQI	GTAC	1 cut(s)	3377
DdeI	CTNAG	9 cut(s)	578, 931, 1378, 2176, 2980, 3267, 3408, 3522, 3660
DraI	TTTAAA	2 cut(s)	600, 3397
EaeI	YGGCCR	1 cut(s)	75
EagI	CGGCCG	1 cut(s)	75
Eam1104I	CTCTTC	5 cut(s)	1587, 1654, 2178, 2217, 3445
EarI	CTCTTC	5 cut(s)	1587, 1654, 2178, 2217, 3445
Ecl136II	GAGCTC	1 cut(s)	3236
EclXI	CGGCCG	1 cut(s)	75
Eco130I	CCWWGG	6 cut(s)	69, 120, 256, 267, 514, 1146
Eco24I	GRGCYC	2 cut(s)	2789, 3238
Eco32I	GATATC	2 cut(s)	403, 2129
Eco47I	GGWCC	2 cut(s)	51, 260
Eco52I	CGGCCG	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	3236
Eco57I	CTGAAG	2 cut(s)	1650, 2408
Eco81I	CCTNAGG	1 cut(s)	3408
Eco88I	CYCGRG	1 cut(s)	3231
Eco91I	GGTNACC	2 cut(s)	2927, 3074
EcoICRI	GAGCTC	1 cut(s)	3236
EcoNI	CCTNNNNNAGG	1 cut(s)	2444
EcoO109I	RGGNCCY	4 cut(s)	51, 341, 2785, 2786
EcoO65I	GGTNACC	2 cut(s)	2927, 3074
EcoRII	CCWGG	3 cut(s)	1089, 2606, 3242
EcoRV	GATATC	2 cut(s)	403, 2129
EcoT14I	CCWWGG	6 cut(s)	69, 120, 256, 267, 514, 1146
EcoT22I	ATGCAT	2 cut(s)	2766, 2896
EcoT38I	GRGCYC	2 cut(s)	2789, 3238
ErhI	CCWWGG	6 cut(s)	69, 120, 256, 267, 514, 1146
Esp3I	CGTCTC	3 cut(s)	164, 1875, 2135
FalI	AAGNNNNNCTT	4 cut(s)	1110, 1142, 3372, 3404
FaqI	GGGAC	3 cut(s)	37, 280, 2497
FauI	CCCGC	2 cut(s)	366, 846
FauNDI	CATATG	1 cut(s)	2290
FbaI	TGATCA	2 cut(s)	288, 1066
FblI	GTMKAC	1 cut(s)	2747
FokI	GGATG	8 cut(s)	714, 738, 1106, 1145, 2438, 3020, 3265, 3563
FriOI	GRGCYC	2 cut(s)	2789, 3238
FspBI	CTAG	3 cut(s)	764, 1440, 2921
GlaI	GCGC	6 cut(s)	806, 1997, 3170, 3172, 3539, 3614
GsaI	CCCAGC	1 cut(s)	1338
GsuI	CTGGAG	2 cut(s)	146, 2736
HaeII	RGCGCY	1 cut(s)	3616
HaeIII	GGCC	4 cut(s)	77, 342, 2606, 2787
HapII	CCGG	4 cut(s)	55, 2476, 3037, 3643
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	6 cut(s)	807, 1998, 3171, 3173, 3540, 3615
Hin6I	GCGC	6 cut(s)	805, 1996, 3169, 3171, 3538, 3613
HinP1I	GCGC	6 cut(s)	805, 1996, 3169, 3171, 3538, 3613
HincII	GTYRAC	4 cut(s)	1486, 2380, 3304, 3603
HindII	GTYRAC	4 cut(s)	1486, 2380, 3304, 3603
HindIII	AAGCTT	2 cut(s)	1979, 2204
HpaI	GTTAAC	2 cut(s)	1486, 3304
HpaII	CCGG	4 cut(s)	55, 2476, 3037, 3643
Hpy166II	GTNNAC	8 cut(s)	1486, 2380, 2748, 2976, 3098, 3126, 3304, 3603
Hpy8I	GTNNAC	8 cut(s)	1486, 2380, 2748, 2976, 3098, 3126, 3304, 3603
Hpy99I	CGWCG	4 cut(s)	179, 195, 1619, 3633
HpyCH4III	ACNGT	6 cut(s)	145, 911, 1619, 1835, 3025, 3262
HpyCH4IV	ACGT	1 cut(s)	682
HpyF3I	CTNAG	9 cut(s)	578, 931, 1378, 2176, 2980, 3267, 3408, 3522, 3660
HpySE526I	ACGT	1 cut(s)	682
HspAI	GCGC	6 cut(s)	805, 1996, 3169, 3171, 3538, 3613
Kpn2I	TCCGGA	1 cut(s)	2475
Ksp22I	TGATCA	2 cut(s)	288, 1066
KspAI	GTTAAC	2 cut(s)	1486, 3304
LguI	GCTCTTC	2 cut(s)	2217, 3445
LmnI	GCTCC	6 cut(s)	28, 224, 632, 1195, 2188, 3466
Lsp1109I	GCAGC	7 cut(s)	199, 604, 946, 963, 1393, 2017, 3043
MaeI	CTAG	3 cut(s)	764, 1440, 2921
MaeII	ACGT	1 cut(s)	682
MbiI	CCGCTC	1 cut(s)	2191
MfeI	CAATTG	1 cut(s)	3327
MflI	RGATCY	4 cut(s)	1024, 1258, 1445, 2983
MhlI	GDGCHC	4 cut(s)	395, 2789, 3128, 3238
MlyI	GAGTC	3 cut(s)	1670, 1739, 3172
MmeI	TCCRAC	4 cut(s)	230, 1173, 2478, 2542
Mph1103I	ATGCAT	2 cut(s)	2766, 2896
MroI	TCCGGA	1 cut(s)	2475
MslI	CAYNNNNRTG	3 cut(s)	756, 1286, 2136
MspCI	CTTAAG	1 cut(s)	2741
MspI	CCGG	4 cut(s)	55, 2476, 3037, 3643
MspR9I	CCNGG	6 cut(s)	55, 1091, 2608, 3038, 3244, 3644
MunI	CAATTG	1 cut(s)	3327
Mva1269I	GAATGC	2 cut(s)	125, 1281
MvaI	CCWGG	3 cut(s)	1091, 2608, 3244
MvnI	CGCG	4 cut(s)	1998, 2899, 3171, 3683
NciI	CCSGG	3 cut(s)	55, 3038, 3644
NcoI	CCATGG	3 cut(s)	256, 514, 1146
NdeI	CATATG	1 cut(s)	2290
NlaIV	GGNNCC	7 cut(s)	53, 67, 343, 2319, 2786, 2787, 3468
NmuCI	GTSAC	8 cut(s)	784, 832, 1141, 2008, 2087, 2269, 2651, 3152
NruI	TCGCGA	1 cut(s)	2899
NsiI	ATGCAT	2 cut(s)	2766, 2896
NspI	RCATGY	5 cut(s)	1514, 2336, 2602, 2740, 2764
NspV	TTCGAA	3 cut(s)	104, 2094, 3019
PaeI	GCATGC	1 cut(s)	2740
PagI	TCATGA	4 cut(s)	664, 1522, 2506, 3472
PaqCI	CACCTGC	2 cut(s)	884, 3034
PauI	GCGCGC	1 cut(s)	3169
PciI	ACATGT	2 cut(s)	1510, 2332
PciSI	GCTCTTC	2 cut(s)	2217, 3445
PcsI	WCGNNNNNNNCGW	1 cut(s)	1620
PctI	GAATGC	2 cut(s)	125, 1281
Ple19I	CGATCG	1 cut(s)	2002
PleI	GAGTC	3 cut(s)	1669, 1738, 3172
PpsI	GAGTC	3 cut(s)	1669, 1738, 3172
PpuMI	RGGWCCY	1 cut(s)	51
PscI	ACATGT	2 cut(s)	1510, 2332
PsiI	TTATAA	1 cut(s)	2963
Psp124BI	GAGCTC	1 cut(s)	3238
Psp5II	RGGWCCY	1 cut(s)	51
Psp6I	CCWGG	3 cut(s)	1089, 2606, 3242
PspEI	GGTNACC	2 cut(s)	2927, 3074
PspFI	CCCAGC	1 cut(s)	1334
PspGI	CCWGG	3 cut(s)	1089, 2606, 3242
PspN4I	GGNNCC	7 cut(s)	53, 67, 343, 2319, 2786, 2787, 3468
PspOMI	GGGCCC	1 cut(s)	2785
PspPI	GGNCC	5 cut(s)	51, 260, 341, 2785, 2786
PspPPI	RGGWCCY	1 cut(s)	51
PsuI	RGATCY	4 cut(s)	1024, 1258, 1445, 2983
PteI	GCGCGC	1 cut(s)	3169
PvuI	CGATCG	1 cut(s)	2002
RgaI	GCGATCGC	1 cut(s)	2002
RruI	TCGCGA	1 cut(s)	2899
RsaI	GTAC	1 cut(s)	3378
RsaNI	GTAC	1 cut(s)	3377
RseI	CAYNNNNRTG	3 cut(s)	756, 1286, 2136
SacI	GAGCTC	1 cut(s)	3238
SapI	GCTCTTC	2 cut(s)	2217, 3445
Sau96I	GGNCC	5 cut(s)	51, 260, 341, 2785, 2786
SchI	GAGTC	3 cut(s)	1670, 1739, 3172
ScrFI	CCNGG	6 cut(s)	55, 1091, 2608, 3038, 3244, 3644
SduI	GDGCHC	4 cut(s)	395, 2789, 3128, 3238
SfaAI	GCGATCGC	1 cut(s)	2002
SfcI	CTRYAG	1 cut(s)	3261
SfuI	TTCGAA	3 cut(s)	104, 2094, 3019
SgfI	GCGATCGC	1 cut(s)	2002
SinI	GGWCC	2 cut(s)	51, 260
SmiI	ATTTAAAT	1 cut(s)	3397
SmiMI	CAYNNNNRTG	3 cut(s)	756, 1286, 2136
SmlI	CTYRAG	5 cut(s)	1127, 2741, 2879, 3180, 3440
SmoI	CTYRAG	5 cut(s)	1127, 2741, 2879, 3180, 3440
SpeI	ACTAGT	1 cut(s)	2920
SphI	GCATGC	1 cut(s)	2740
SsiI	CCGC	8 cut(s)	74, 373, 423, 853, 2191, 2617, 2862, 3683
SspI	AATATT	4 cut(s)	1175, 2280, 2534, 3289
SspMI	CTAG	3 cut(s)	764, 1440, 2921
SstI	GAGCTC	1 cut(s)	3238
StyD4I	CCNGG	6 cut(s)	53, 1089, 2606, 3036, 3242, 3642
StyI	CCWWGG	6 cut(s)	69, 120, 256, 267, 514, 1146
SwaI	ATTTAAAT	1 cut(s)	3397
TaaI	ACNGT	6 cut(s)	145, 911, 1619, 1835, 3025, 3262
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	8 cut(s)	104, 177, 1754, 2024, 2094, 2356, 2998, 3019
TatI	WGTACW	1 cut(s)	3376
TauI	GCSGC	3 cut(s)	77, 425, 2620
TscAI	CASTG	7 cut(s)	916, 1825, 2017, 2596, 2656, 3034, 3363
TseFI	GTSAC	8 cut(s)	784, 832, 1141, 2008, 2087, 2269, 2651, 3152
TseI	GCWGC	7 cut(s)	187, 592, 959, 976, 1406, 2030, 3056
Tsp45I	GTSAC	8 cut(s)	784, 832, 1141, 2008, 2087, 2269, 2651, 3152
TspGWI	ACGGA	3 cut(s)	1759, 1899, 2271
TspRI	CASTG	7 cut(s)	916, 1825, 2017, 2596, 2656, 3034, 3363
Vha464I	CTTAAG	1 cut(s)	2741
VneI	GTGCAC	1 cut(s)	3124
VpaK11BI	GGWCC	2 cut(s)	51, 260
XagI	CCTNNNNNAGG	1 cut(s)	2444
XapI	RAATTY	5 cut(s)	428, 1940, 2259, 2827, 3483
XceI	RCATGY	5 cut(s)	1514, 2336, 2602, 2740, 2764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2809
XmiI	GTMKAC	1 cut(s)	2747
XspI	CTAG	3 cut(s)	764, 1440, 2921
Zsp2I	ATGCAT	2 cut(s)	2766, 2896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.