Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000446.1

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

131782 .. 142630

Gene Structure 10849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000446.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3675 bp

atgataggtagtggaagtatggagcagtcgcacaaggtacacaggtcccggcagtcggccgataagaagaagccccaaaaagattcgaagaagcaaaaccccaaggcattcgctttcagctcaactgtcaaagccaagcgtctccagtctcgtgccgtcgagaaagagcagcgacggcttcatgttccgaccattgatcgctcctacggcgaacagcctccttttgttgttctcgttcatggacctcccaaggttggcaagtctttgttgatcaagtcccttgtaaagcattataccaaacatgatttacggcaggtgaaaggccccattaccattgtatcagggaagcagaggcgggttcagtttgtggagtgccccaatgatatcaatggcatgattgatgccgcaaaatttgctgatttagcattgcttcttatagatggaagctatggttttgaaatggaaacatttgagttccttaatatattgcaagtccatggcttcccaaaggtcatgggagttctcactcaccttgataagttcaaagatgcaaagaaactgaggaaaacaaagcagcatttaaaacatcggttctggactgaaatatatgatggagctaaattgttttatttatcaggtcttattcatgaaaagtatgtcaaacgtgagattcacaatctcgctcgtttcatatctgttatgaagttccatcctttatcttggagaactgctcatccttatgttctagtagatcgttttgaagatgtcactccccctgaaaaagtgcgcttgaataataaatgtgatagaaatgtcacactttatggttatttgcgggggtgtaacatgaaaaaaggaacaaagattcatattgcaggtgttggtgattacagtgtcgctggtatgacaggcttagctgatccctgtcctttaccctctgctgccaaaaagaaggggctgcgtgataaagaaaaattgttttatgcacctatgtctggacttggggatctcctgtatgacaaagatgctgtctatataaatataaatgatcactttgttcagttttcaaaccaggatgaaaaggaggaagcaacgaacaaaggagagcttgaggatgtgggtgcgaccatggttaaaagtcttcaaaacccaaaatattcgcttgatgaaaagttggagcagagcttcattaacttttatatccagaaacctaaattggaatctcaacatgatgaaaaagattttgatgaatccagaaaacgcattcgtatgatagagcctttagaggaacatcagtttggggaaacaatgaaagtcgggggttctggtcaagaaagtaatgttgaggatattgctggctcagaatcaaaatcttatcagaatgatgctgctcgtaatgttgcactaacaaaaagtgattctagtggatctgatagagaaaatggtgatgtatcagatcaagatgttaacctcaaagatcacttgaaggaacatgttgagtttcatgatggaaggtcaaggagaaaagttatctttgaaaatgaccttaatcctactgatatggaggattcagaagaggagtcagaagatgatgacgacggtggcgataatgatgcagataatcatacctcttctggttcagagtattcagaggaagatagagaaatcgatgagacagatgatgatgtgggaaacatagcaaagtggaaggagtctttggcagaacggacattttcgagacaaactactaaccttatgcaacttgtatatgggaaatcttcatcggtttcaactaaagccaatgaagaacaagacagtagtgaggaggaaagtgatggagatgacttttttaagccaaaaggagacggaattaagaaacatagagtagaagcagaaaattggaatgttgaggattcttccaaatttacaaatcattcaatcaaggactggaatgataaaaagcttatagagagtgtgcgcgatcgctttgtcactggtgattggtcgaaggctgctaaaagaaatcaagacacagaggcgacatttgaagatgaagatgctgtctttggtgactttgaagatttagaaacgggtgagaggcatgatggatatcatacaaatgagacgagaaaagttgcaaacaacaagaaagctggcttagatgaagaggagcggaggctcaaaaagcttgctcttcgtgccaagtttgatgctcaatatccttttgacaccaaagacggaatttcttttgtgaccttaatattatctacatatgatgaacctgatacaagtgaggaggaacctgatgatacacatgtaagccggtttggacgagatcgagctaaagaaagcggctatgttgacaagctgaaggaggagattgaactccggaaacaaatgaatatagccgaactcaatgaccttgatgaggacacccgattagaggttgagggtttccagacagggacttaccttcggttggaagttaatgatgttccttatgagatggttgaatattttgatccctgccagcctgttttggttggaggaattggtcttggggaagaaagcactggatacatgcaggccaggttaaagcggcatagatggcacaagaaagtgctaaagaccagtgaccccatcattgtatctattgggtggaggcgttaccaaacaattcctgtttatgccattgaagattgcaatggaaggcatcgcatgcttaagtatactccagaacacatgcattgccttgcaatgttttggggccctcttgcccctcccaatactggtgtggttgctttccagaatttatcaaacaatcaggcaacatttaggatcaccgccacggcagttgtgcttgagttcaaccacgcatcgcgaatagtgaagaaactcaaactagttggttacccttgcaagatattcaagaatacagcacttataaaagatatgtttacctcagatcttgaaatagctcgatttgaaggtgcttcagttcgaacagtcagtggcatccgggggcaggtgaaaaaggctgcaaaagaagaaattggtaatgaaccgaaaaagaagggtggacaaccaaaagaaggaattgttaggtgcacctttgaggacaaaattaagatgagtgacattgtgtttttgcgcgcttggactcaagttgatgttccttgcttttacaacccattaaccacatctctgcaaccccgtgatctgacctggcgagggatgaaaactgtagctgagttgaggagagaacgcaatattcctattcctgttaacaaagattcactctacaagccaattgaaaggaagcagaggaagttcaacccactggtgattcccaaagcagtacaagcaagtcttccatttaaatcaaagcctaaggatacaccgaatagaagaaagcaacttcttgaggatagaagagctgttgtaagggagcctcatgaacagaaaattcatgctctgcttcaaaatcttcggttaatcaaatatgagaagttaaagaagcgcaagataaaggatgagaaaaaaagaaaagaaattgaatcacagaaagccaaagatgagcagttgacaagaaagcgccagagagaagaacgacgagagagataccgggtgcaagacaaagctcagaagaaaatgaggagacacgcggaggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1224

Amino Acids

140.91

Weight (kDa)

8.41

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2945
AarI	CACCTGC	3 cut(s)	304, 866, 3016
Acc36I	ACCTGC	3 cut(s)	304, 866, 3016
AccBSI	CCGCTC	1 cut(s)	2173
AccI	GTMKAC	1 cut(s)	2729
AccII	CGCG	4 cut(s)	1980, 2881, 3153, 3665
AccIII	TCCGGA	1 cut(s)	2388
AciI	CCGC	8 cut(s)	355, 405, 835, 2173, 2352, 2599, 2844, 3665
AclWI	GGATC	5 cut(s)	914, 1014, 1435, 2516, 2846
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	5 cut(s)	410, 1922, 2241, 2809, 3465
AcuI	CTGAAG	2 cut(s)	2390, 2979
AfaI	GTAC	2 cut(s)	39, 3360
AflII	CTTAAG	1 cut(s)	2723
AflIII	ACRYGT	2 cut(s)	1492, 2314
AhlI	ACTAGT	1 cut(s)	2902
AjnI	CCWGG	3 cut(s)	1071, 2588, 3224
AjuI	GAANNNNNNNTTGG	6 cut(s)	1199, 1231, 1281, 1313, 1700, 1732
AloI	GAACNNNNNNTCC	2 cut(s)	718, 750
Alw21I	GWGCWC	1 cut(s)	3110
Alw26I	GTCTC	7 cut(s)	146, 153, 1667, 1732, 1857, 2117, 3652
Alw44I	GTGCAC	1 cut(s)	3106
AlwI	GGATC	5 cut(s)	914, 1014, 1435, 2516, 2846
Aor13HI	TCCGGA	1 cut(s)	2388
AoxI	GGCC	4 cut(s)	57, 322, 2586, 2767
ApaI	GGGCCC	1 cut(s)	2771
ApaLI	GTGCAC	1 cut(s)	3106
ApeKI	GCWGC	7 cut(s)	169, 574, 941, 958, 1388, 2012, 3038
ApoI	RAATTY	5 cut(s)	410, 1922, 2241, 2809, 3465
ArsI	GACNNNNNNTTYG	2 cut(s)	1014, 1046
AsiSI	GCGATCGC	1 cut(s)	1984
AspLEI	GCGC	6 cut(s)	789, 1980, 3153, 3155, 3522, 3597
AspS9I	GGNCC	5 cut(s)	45, 242, 323, 2767, 2768
AsuC2I	CCSGG	3 cut(s)	49, 3020, 3626
AsuII	TTCGAA	2 cut(s)	86, 3001
AvaII	GGWCC	2 cut(s)	45, 242
AxyI	CCTNAGG	1 cut(s)	3390
BaeGI	GKGCMC	3 cut(s)	377, 2771, 3110
BaeI	ACNNNNGTAYC	6 cut(s)	29, 62, 321, 354, 2301, 2334
BanII	GRGCYC	1 cut(s)	2771
BauI	CACGAG	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	1133, 3362
Bbv12I	GWGCWC	1 cut(s)	3110
BbvI	GCAGC	7 cut(s)	181, 586, 928, 945, 1375, 1999, 3025
BccI	CCATC	9 cut(s)	434, 605, 717, 1502, 1829, 2099, 2500, 2601, 2648
BceAI	ACGGC	5 cut(s)	140, 191, 223, 326, 2865
BcgI	CGANNNNNNTGC	2 cut(s)	1595, 1629
BciT130I	CCWGG	3 cut(s)	1073, 2590, 3226
BciVI	GTATCC	2 cut(s)	2570, 3388
BclI	TGATCA	2 cut(s)	270, 1048
BcnI	CCSGG	3 cut(s)	49, 3020, 3626
BcoDI	GTCTC	7 cut(s)	146, 153, 1667, 1732, 1857, 2117, 3652
BcuI	ACTAGT	1 cut(s)	2902
BfaI	CTAG	3 cut(s)	746, 1422, 2903
BfmI	CTRYAG	1 cut(s)	3243
BfoI	RGCGCY	1 cut(s)	3598
BfrI	CTTAAG	1 cut(s)	2723
BfuAI	ACCTGC	3 cut(s)	304, 866, 3016
BfuI	GTATCC	2 cut(s)	2570, 3388
BglII	AGATCT	1 cut(s)	2965
BlpI	GCTNAGC	1 cut(s)	913
Bme1390I	CCNGG	6 cut(s)	49, 1073, 2590, 3020, 3226, 3626
Bme18I	GGWCC	2 cut(s)	45, 242
BmgT120I	GGNCC	5 cut(s)	45, 242, 323, 2767, 2768
BmiI	GGNNCC	6 cut(s)	47, 325, 2301, 2768, 2769, 3450
BmrFI	CCNGG	6 cut(s)	49, 1073, 2590, 3020, 3226, 3626
BpiI	GAAGAC	2 cut(s)	1133, 3362
BplI	GAGNNNNNCTC	2 cut(s)	715, 747
BpmI	CTGGAG	2 cut(s)	128, 2718
Bpu1102I	GCTNAGC	1 cut(s)	913
Bpu14I	TTCGAA	2 cut(s)	86, 3001
BpuEI	CTTGAG	4 cut(s)	1130, 2882, 3147, 3443
BpuMI	CCSGG	3 cut(s)	49, 3020, 3626
Bsa29I	ATCGAT	1 cut(s)	1668
BsaBI	GATNNNNATC	1 cut(s)	2109
BsaJI	CCNNGG	6 cut(s)	102, 249, 496, 1128, 2847, 3019
BsaWI	WCCGGW	1 cut(s)	2388
Bse118I	RCCGGY	1 cut(s)	2322
Bse1I	ACTGG	7 cut(s)	145, 1952, 1999, 2578, 2631, 2794, 3345
Bse21I	CCTNAGG	1 cut(s)	3390
Bse3DI	GCAATG	4 cut(s)	425, 2710, 2746, 2763
Bse8I	GATNNNNATC	1 cut(s)	2109
BseAI	TCCGGA	1 cut(s)	2388
BseBI	CCWGG	3 cut(s)	1073, 2590, 3226
BseCI	ATCGAT	1 cut(s)	1668
BseDI	CCNNGG	6 cut(s)	102, 249, 496, 1128, 2847, 3019
BseGI	GGATG	7 cut(s)	709, 733, 1081, 1120, 3015, 3240, 3538
BseJI	GATNNNNATC	1 cut(s)	2109
BseMI	GCAATG	4 cut(s)	425, 2710, 2746, 2763
BseMII	CTCAG	5 cut(s)	551, 1374, 2976, 3240, 3656
BseNI	ACTGG	7 cut(s)	145, 1952, 1999, 2578, 2631, 2794, 3345
BsePI	GCGCGC	1 cut(s)	3151
BseRI	GAGGAG	7 cut(s)	1592, 1838, 2183, 2309, 2390, 3271, 3670
BseSI	GKGCMC	3 cut(s)	377, 2771, 3110
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	7 cut(s)	181, 586, 928, 945, 1375, 1999, 3025
Bsh1236I	CGCG	4 cut(s)	1980, 2881, 3153, 3665
Bsh1285I	CGRYCG	2 cut(s)	60, 1984
BshFI	GGCC	4 cut(s)	59, 324, 2588, 2769
BshVI	ATCGAT	1 cut(s)	1668
BsiEI	CGRYCG	2 cut(s)	60, 1984
BsiHKAI	GWGCWC	1 cut(s)	3110
BsiSI	CCGG	5 cut(s)	49, 2323, 2389, 3019, 3625
BslFI	GGGAC	3 cut(s)	31, 262, 2479
BsmAI	GTCTC	7 cut(s)	146, 153, 1667, 1732, 1857, 2117, 3652
BsmBI	CGTCTC	3 cut(s)	146, 1857, 2117
BsmFI	GGGAC	3 cut(s)	31, 262, 2479
BsmI	GAATGC	2 cut(s)	107, 1263
BsnI	GGCC	4 cut(s)	59, 324, 2588, 2769
Bsp119I	TTCGAA	2 cut(s)	86, 3001
Bsp120I	GGGCCC	1 cut(s)	2767
Bsp1286I	GDGCHC	3 cut(s)	377, 2771, 3110
Bsp13I	TCCGGA	1 cut(s)	2388
Bsp1720I	GCTNAGC	1 cut(s)	913
Bsp19I	CCATGG	2 cut(s)	496, 1128
Bsp68I	TCGCGA	1 cut(s)	2881
BspACI	CCGC	8 cut(s)	355, 405, 835, 2173, 2352, 2599, 2844, 3665
BspANI	GGCC	4 cut(s)	59, 324, 2588, 2769
BspCNI	CTCAG	5 cut(s)	552, 1373, 2975, 3241, 3655
BspDI	ATCGAT	1 cut(s)	1668
BspEI	TCCGGA	1 cut(s)	2388
BspFNI	CGCG	4 cut(s)	1980, 2881, 3153, 3665
BspHI	TCATGA	3 cut(s)	646, 1504, 3454
BspLI	GGNNCC	6 cut(s)	47, 325, 2301, 2768, 2769, 3450
BspMI	ACCTGC	3 cut(s)	304, 866, 3016
BspPI	GGATC	5 cut(s)	914, 1014, 1435, 2516, 2846
BspQI	GCTCTTC	2 cut(s)	2199, 3427
BspT104I	TTCGAA	2 cut(s)	86, 3001
BspTI	CTTAAG	1 cut(s)	2723
BsrBI	CCGCTC	1 cut(s)	2173
BsrDI	GCAATG	4 cut(s)	425, 2710, 2746, 2763
BsrFI	RCCGGY	1 cut(s)	2322
BsrI	ACTGG	7 cut(s)	145, 1952, 1999, 2578, 2631, 2794, 3345
BssAI	RCCGGY	1 cut(s)	2322
BssECI	CCNNGG	6 cut(s)	102, 249, 496, 1128, 2847, 3019
BssHII	GCGCGC	1 cut(s)	3151
BssNAI	GTATAC	1 cut(s)	2730
BssSI	CACGAG	1 cut(s)	150
BssT1I	CCWWGG	4 cut(s)	102, 249, 496, 1128
Bst1107I	GTATAC	1 cut(s)	2730
Bst2BI	CACGAG	1 cut(s)	150
Bst2UI	CCWGG	3 cut(s)	1073, 2590, 3226
Bst4CI	ACNGT	6 cut(s)	127, 893, 1601, 1817, 3007, 3244
Bst6I	CTCTTC	5 cut(s)	1569, 1636, 2160, 2199, 3427
BstAFI	CTTAAG	1 cut(s)	2723
BstAPI	GCANNNNNTGC	2 cut(s)	413, 2719
BstBI	TTCGAA	2 cut(s)	86, 3001
BstC8I	GCNNGC	7 cut(s)	1357, 2155, 2190, 2531, 2586, 2720, 3153
BstDEI	CTNAG	8 cut(s)	560, 913, 1360, 2158, 2962, 3249, 3390, 3642
BstDSI	CCRYGG	3 cut(s)	496, 1128, 2847
BstEII	GGTNACC	1 cut(s)	2909
BstENI	CCTNNNNNAGG	1 cut(s)	2426
BstF5I	GGATG	7 cut(s)	709, 733, 1081, 1120, 3015, 3240, 3538
BstFNI	CGCG	4 cut(s)	1980, 2881, 3153, 3665
BstH2I	RGCGCY	1 cut(s)	3598
BstHHI	GCGC	6 cut(s)	789, 1980, 3153, 3155, 3522, 3597
BstMAI	GTCTC	7 cut(s)	146, 153, 1667, 1732, 1857, 2117, 3652
BstMCI	CGRYCG	2 cut(s)	60, 1984
BstMWI	GCNNNNNNNGC	9 cut(s)	175, 207, 413, 422, 2185, 2198, 2608, 2719, 3362
BstNI	CCWGG	3 cut(s)	1073, 2590, 3226
BstNSI	RCATGY	5 cut(s)	1496, 2318, 2584, 2722, 2746
BstPI	GGTNACC	1 cut(s)	2909
BstSCI	CCNGG	6 cut(s)	47, 1071, 2588, 3018, 3224, 3624
BstSFI	CTRYAG	1 cut(s)	3243
BstSLI	GKGCMC	3 cut(s)	377, 2771, 3110
BstUI	CGCG	4 cut(s)	1980, 2881, 3153, 3665
BstV1I	GCAGC	7 cut(s)	181, 586, 928, 945, 1375, 1999, 3025
BstV2I	GAAGAC	2 cut(s)	1133, 3362
BstX2I	RGATCY	3 cut(s)	1006, 1427, 2965
BstYI	RGATCY	3 cut(s)	1006, 1427, 2965
BstZ17I	GTATAC	1 cut(s)	2730
BstZI	CGGCCG	1 cut(s)	57
Bsu15I	ATCGAT	1 cut(s)	1668
Bsu36I	CCTNAGG	1 cut(s)	3390
BsuI	GTATCC	2 cut(s)	2570, 3388
BsuRI	GGCC	4 cut(s)	59, 324, 2588, 2769
BsuTUI	ATCGAT	1 cut(s)	1668
BtgI	CCRYGG	3 cut(s)	496, 1128, 2847
BtgZI	GCGATG	2 cut(s)	2699, 2862
BtsCI	GGATG	7 cut(s)	709, 733, 1081, 1120, 3015, 3240, 3538
BtsIMutI	CAGTG	6 cut(s)	898, 1992, 2571, 2638, 3016, 3338
BtuMI	TCGCGA	1 cut(s)	2881
BveI	ACCTGC	3 cut(s)	304, 866, 3016
Cac8I	GCNNGC	7 cut(s)	1357, 2155, 2190, 2531, 2586, 2720, 3153
CciI	TCATGA	3 cut(s)	646, 1504, 3454
CfoI	GCGC	6 cut(s)	789, 1980, 3153, 3155, 3522, 3597
Cfr10I	RCCGGY	1 cut(s)	2322
Cfr13I	GGNCC	5 cut(s)	45, 242, 323, 2767, 2768
ClaI	ATCGAT	1 cut(s)	1668
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	38, 3359
CspCI	CAANNNNNGTGG	2 cut(s)	2836, 2871
CviQI	GTAC	2 cut(s)	38, 3359
DdeI	CTNAG	8 cut(s)	560, 913, 1360, 2158, 2962, 3249, 3390, 3642
DraI	TTTAAA	2 cut(s)	582, 3379
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	5 cut(s)	1569, 1636, 2160, 2199, 3427
EarI	CTCTTC	5 cut(s)	1569, 1636, 2160, 2199, 3427
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	4 cut(s)	102, 249, 496, 1128
Eco24I	GRGCYC	1 cut(s)	2771
Eco32I	GATATC	2 cut(s)	385, 2111
Eco47I	GGWCC	2 cut(s)	45, 242
Eco52I	CGGCCG	1 cut(s)	57
Eco57I	CTGAAG	2 cut(s)	2390, 2979
Eco81I	CCTNAGG	1 cut(s)	3390
Eco91I	GGTNACC	1 cut(s)	2909
EcoNI	CCTNNNNNAGG	1 cut(s)	2426
EcoO109I	RGGNCCY	4 cut(s)	45, 323, 2767, 2768
EcoO65I	GGTNACC	1 cut(s)	2909
EcoRII	CCWGG	3 cut(s)	1071, 2588, 3224
EcoRV	GATATC	2 cut(s)	385, 2111
EcoT14I	CCWWGG	4 cut(s)	102, 249, 496, 1128
EcoT22I	ATGCAT	1 cut(s)	2748
EcoT38I	GRGCYC	1 cut(s)	2771
ErhI	CCWWGG	4 cut(s)	102, 249, 496, 1128
Esp3I	CGTCTC	3 cut(s)	146, 1857, 2117
FalI	AAGNNNNNCTT	4 cut(s)	1092, 1124, 3354, 3386
FaqI	GGGAC	3 cut(s)	31, 262, 2479
FauI	CCCGC	2 cut(s)	348, 828
FauNDI	CATATG	1 cut(s)	2272
FbaI	TGATCA	2 cut(s)	270, 1048
FblI	GTMKAC	1 cut(s)	2729
FokI	GGATG	7 cut(s)	696, 720, 1088, 1127, 3002, 3247, 3545
FriOI	GRGCYC	1 cut(s)	2771
FspBI	CTAG	3 cut(s)	746, 1422, 2903
GlaI	GCGC	6 cut(s)	788, 1979, 3152, 3154, 3521, 3596
GsuI	CTGGAG	2 cut(s)	128, 2718
HaeII	RGCGCY	1 cut(s)	3598
HaeIII	GGCC	4 cut(s)	59, 324, 2588, 2769
HapII	CCGG	5 cut(s)	49, 2323, 2389, 3019, 3625
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	6 cut(s)	789, 1980, 3153, 3155, 3522, 3597
Hin6I	GCGC	6 cut(s)	787, 1978, 3151, 3153, 3520, 3595
HinP1I	GCGC	6 cut(s)	787, 1978, 3151, 3153, 3520, 3595
HincII	GTYRAC	4 cut(s)	1468, 2362, 3286, 3585
HindII	GTYRAC	4 cut(s)	1468, 2362, 3286, 3585
HindIII	AAGCTT	2 cut(s)	1961, 2186
HpaI	GTTAAC	2 cut(s)	1468, 3286
HpaII	CCGG	5 cut(s)	49, 2323, 2389, 3019, 3625
Hpy166II	GTNNAC	9 cut(s)	40, 1468, 2362, 2730, 2958, 3080, 3108, 3286, 3585
Hpy8I	GTNNAC	9 cut(s)	40, 1468, 2362, 2730, 2958, 3080, 3108, 3286, 3585
Hpy99I	CGWCG	4 cut(s)	161, 177, 1601, 3615
HpyCH4III	ACNGT	6 cut(s)	127, 893, 1601, 1817, 3007, 3244
HpyCH4IV	ACGT	1 cut(s)	664
HpyF10VI	GCNNNNNNNGC	9 cut(s)	175, 207, 413, 422, 2185, 2198, 2608, 2719, 3362
HpyF3I	CTNAG	8 cut(s)	560, 913, 1360, 2158, 2962, 3249, 3390, 3642
HpySE526I	ACGT	1 cut(s)	664
HspAI	GCGC	6 cut(s)	787, 1978, 3151, 3153, 3520, 3595
Kpn2I	TCCGGA	1 cut(s)	2388
Ksp22I	TGATCA	2 cut(s)	270, 1048
KspAI	GTTAAC	2 cut(s)	1468, 3286
LguI	GCTCTTC	2 cut(s)	2199, 3427
LmnI	GCTCC	6 cut(s)	22, 206, 614, 1177, 2170, 3448
Lsp1109I	GCAGC	7 cut(s)	181, 586, 928, 945, 1375, 1999, 3025
MaeI	CTAG	3 cut(s)	746, 1422, 2903
MaeII	ACGT	1 cut(s)	664
MbiI	CCGCTC	1 cut(s)	2173
MfeI	CAATTG	1 cut(s)	3309
MflI	RGATCY	3 cut(s)	1006, 1427, 2965
MhlI	GDGCHC	3 cut(s)	377, 2771, 3110
MlyI	GAGTC	3 cut(s)	1589, 1721, 3154
MmeI	TCCRAC	4 cut(s)	212, 1155, 2460, 2524
Mph1103I	ATGCAT	1 cut(s)	2748
MroI	TCCGGA	1 cut(s)	2388
MslI	CAYNNNNRTG	3 cut(s)	738, 1268, 2118
MspCI	CTTAAG	1 cut(s)	2723
MspI	CCGG	5 cut(s)	49, 2323, 2389, 3019, 3625
MspR9I	CCNGG	6 cut(s)	49, 1073, 2590, 3020, 3226, 3626
MunI	CAATTG	1 cut(s)	3309
Mva1269I	GAATGC	2 cut(s)	107, 1263
MvaI	CCWGG	3 cut(s)	1073, 2590, 3226
MvnI	CGCG	4 cut(s)	1980, 2881, 3153, 3665
MwoI	GCNNNNNNNGC	9 cut(s)	175, 207, 413, 422, 2185, 2198, 2608, 2719, 3362
NciI	CCSGG	3 cut(s)	49, 3020, 3626
NcoI	CCATGG	2 cut(s)	496, 1128
NdeI	CATATG	1 cut(s)	2272
NlaIV	GGNNCC	6 cut(s)	47, 325, 2301, 2768, 2769, 3450
NmuCI	GTSAC	7 cut(s)	766, 814, 1990, 2069, 2251, 2633, 3134
NruI	TCGCGA	1 cut(s)	2881
NsiI	ATGCAT	1 cut(s)	2748
NspI	RCATGY	5 cut(s)	1496, 2318, 2584, 2722, 2746
NspV	TTCGAA	2 cut(s)	86, 3001
PaeI	GCATGC	1 cut(s)	2722
PagI	TCATGA	3 cut(s)	646, 1504, 3454
PaqCI	CACCTGC	3 cut(s)	304, 866, 3016
PauI	GCGCGC	1 cut(s)	3151
PciI	ACATGT	2 cut(s)	1492, 2314
PciSI	GCTCTTC	2 cut(s)	2199, 3427
PcsI	WCGNNNNNNNCGW	1 cut(s)	1602
PctI	GAATGC	2 cut(s)	107, 1263
Ple19I	CGATCG	1 cut(s)	1984
PleI	GAGTC	3 cut(s)	1588, 1720, 3154
PpsI	GAGTC	3 cut(s)	1588, 1720, 3154
PpuMI	RGGWCCY	1 cut(s)	45
PscI	ACATGT	2 cut(s)	1492, 2314
PsiI	TTATAA	1 cut(s)	2945
Psp5II	RGGWCCY	1 cut(s)	45
Psp6I	CCWGG	3 cut(s)	1071, 2588, 3224
PspEI	GGTNACC	1 cut(s)	2909
PspGI	CCWGG	3 cut(s)	1071, 2588, 3224
PspN4I	GGNNCC	6 cut(s)	47, 325, 2301, 2768, 2769, 3450
PspOMI	GGGCCC	1 cut(s)	2767
PspPI	GGNCC	5 cut(s)	45, 242, 323, 2767, 2768
PspPPI	RGGWCCY	1 cut(s)	45
PsuI	RGATCY	3 cut(s)	1006, 1427, 2965
PteI	GCGCGC	1 cut(s)	3151
PvuI	CGATCG	1 cut(s)	1984
RgaI	GCGATCGC	1 cut(s)	1984
RruI	TCGCGA	1 cut(s)	2881
RsaI	GTAC	2 cut(s)	39, 3360
RsaNI	GTAC	2 cut(s)	38, 3359
RseI	CAYNNNNRTG	3 cut(s)	738, 1268, 2118
SapI	GCTCTTC	2 cut(s)	2199, 3427
Sau96I	GGNCC	5 cut(s)	45, 242, 323, 2767, 2768
SchI	GAGTC	3 cut(s)	1589, 1721, 3154
ScrFI	CCNGG	6 cut(s)	49, 1073, 2590, 3020, 3226, 3626
SduI	GDGCHC	3 cut(s)	377, 2771, 3110
SfaAI	GCGATCGC	1 cut(s)	1984
SfcI	CTRYAG	1 cut(s)	3243
SfuI	TTCGAA	2 cut(s)	86, 3001
SgfI	GCGATCGC	1 cut(s)	1984
SinI	GGWCC	2 cut(s)	45, 242
SmiI	ATTTAAAT	1 cut(s)	3379
SmiMI	CAYNNNNRTG	3 cut(s)	738, 1268, 2118
SmlI	CTYRAG	5 cut(s)	1109, 2723, 2861, 3162, 3422
SmoI	CTYRAG	5 cut(s)	1109, 2723, 2861, 3162, 3422
SpeI	ACTAGT	1 cut(s)	2902
SphI	GCATGC	1 cut(s)	2722
SsiI	CCGC	8 cut(s)	355, 405, 835, 2173, 2352, 2599, 2844, 3665
SspI	AATATT	4 cut(s)	1157, 2262, 2516, 3271
SspMI	CTAG	3 cut(s)	746, 1422, 2903
StyD4I	CCNGG	6 cut(s)	47, 1071, 2588, 3018, 3224, 3624
StyI	CCWWGG	4 cut(s)	102, 249, 496, 1128
SwaI	ATTTAAAT	1 cut(s)	3379
TaaI	ACNGT	6 cut(s)	127, 893, 1601, 1817, 3007, 3244
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	8 cut(s)	86, 159, 1668, 1736, 2006, 2338, 2980, 3001
TatI	WGTACW	1 cut(s)	3358
TauI	GCSGC	3 cut(s)	407, 2355, 2602
TscAI	CASTG	6 cut(s)	898, 1999, 2578, 2638, 3016, 3345
TseFI	GTSAC	7 cut(s)	766, 814, 1990, 2069, 2251, 2633, 3134
TseI	GCWGC	7 cut(s)	169, 574, 941, 958, 1388, 2012, 3038
Tsp45I	GTSAC	7 cut(s)	766, 814, 1990, 2069, 2251, 2633, 3134
TspGWI	ACGGA	3 cut(s)	1741, 1881, 2253
TspRI	CASTG	6 cut(s)	898, 1999, 2578, 2638, 3016, 3345
Vha464I	CTTAAG	1 cut(s)	2723
VneI	GTGCAC	1 cut(s)	3106
VpaK11BI	GGWCC	2 cut(s)	45, 242
XagI	CCTNNNNNAGG	1 cut(s)	2426
XapI	RAATTY	5 cut(s)	410, 1922, 2241, 2809, 3465
XceI	RCATGY	5 cut(s)	1496, 2318, 2584, 2722, 2746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2791
XmiI	GTMKAC	1 cut(s)	2729
XspI	CTAG	3 cut(s)	746, 1422, 2903
Zsp2I	ATGCAT	1 cut(s)	2748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.