Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000371.1

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

58043 .. 58952

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000371.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgggaggaaaaccagaagaagtgctttctaggtgcacctttgaggacaaaattacggggaatgacattgttttccttactggttggacaccagtagaagttcctcagttttataatcccttgacaacagccctacaacctcgcgatcaggtctggcaagggatgaaaaccacagctgagctgaggagagaacacaatcttcctattcctgttaataaagattcactttacaagccaattgaaaggaagcggaggaagttcaacccattggtgatctctaagtcattgcaaacagctctcccatttgtttcaaagtttaagaacacacccgggagaagaaggccacctattgaaaatagaagagctgttgtcatggagcctcgtgaacgaagagttcatactagtgttcaacagcttggtttgattagtagtgacaagagaaagaagcgcagggctaaggatgacaagaaaagaagagagattgaaccacgcaaagctaaaaccgagcagttgttgagaaagcgccagagagaagaacgccgagagagattccaagtgcatgacagactgaggaagaaaattaggagaaatgcagaggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

200

Amino Acids

23.88

Weight (kDa)

11.03

Isoelectric Point (pI)

82.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AccII	CGCG	1 cut(s)	144
AciI	CCGC	1 cut(s)	250
AgsI	TTSAA	6 cut(s)	242, 262, 312, 353, 410, 485
AhlI	ACTAGT	1 cut(s)	401
AluBI	AGCT	6 cut(s)	176, 181, 296, 365, 415, 497
AluI	AGCT	6 cut(s)	176, 181, 296, 365, 415, 497
Alw21I	GWGCWC	1 cut(s)	38
Alw44I	GTGCAC	1 cut(s)	34
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	341
ApaLI	GTGCAC	1 cut(s)	34
AspLEI	GCGC	2 cut(s)	450, 525
AsuC2I	CCSGG	2 cut(s)	330, 331
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	38
BarI	GAAGNNNNNNTAC	2 cut(s)	382, 414
BauI	CACGAG	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	182
BcnI	CCSGG	2 cut(s)	330, 331
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	2 cut(s)	30, 402
BfoI	RGCGCY	1 cut(s)	526
BlpI	GCTNAGC	1 cut(s)	177
Bme1390I	CCNGG	2 cut(s)	330, 331
BmeT110I	CYCGRG	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	2 cut(s)	330, 331
Bpu10I	CCTNAGC	2 cut(s)	182, 456
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuMI	CCSGG	2 cut(s)	330, 331
BsaJI	CCNNGG	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	85, 92
Bse3DI	GCAATG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	2 cut(s)	168, 466
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	4 cut(s)	119, 168, 173, 560
BseNI	ACTGG	2 cut(s)	85, 92
BseRI	GAGGAG	1 cut(s)	199
BseSI	GKGCMC	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	330
BsnI	GGCC	1 cut(s)	343
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	145, 273
Bsp1720I	GCTNAGC	1 cut(s)	177
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	4 cut(s)	118, 169, 174, 561
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	378
BspQI	GCTCTTC	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	85, 92
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	2 cut(s)	145, 273
BssSI	CACGAG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	381
Bst6I	CTCTTC	3 cut(s)	355, 385, 469
BstDEI	CTNAG	6 cut(s)	105, 177, 182, 279, 456, 569
BstF5I	GGATG	2 cut(s)	168, 466
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	526
BstHHI	GCGC	2 cut(s)	450, 525
BstKTI	GATC	2 cut(s)	148, 276
BstMBI	GATC	2 cut(s)	145, 273
BstSCI	CCNGG	2 cut(s)	328, 329
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	168, 466
BtuMI	TCGCGA	1 cut(s)	144
CfoI	GCGC	2 cut(s)	450, 525
Cfr9I	CCCGGG	1 cut(s)	329
CviAII	CATG	2 cut(s)	373, 560
DdeI	CTNAG	6 cut(s)	105, 177, 182, 279, 456, 569
DpnI	GATC	2 cut(s)	147, 275
DpnII	GATC	2 cut(s)	145, 273
Eam1104I	CTCTTC	3 cut(s)	355, 385, 469
EarI	CTCTTC	3 cut(s)	355, 385, 469
Eco88I	CYCGRG	1 cut(s)	329
FaeI	CATG	2 cut(s)	376, 563
FaiI	YATR	4 cut(s)	114, 374, 399, 561
FalI	AAGNNNNNCTT	4 cut(s)	9, 41, 210, 242
FatI	CATG	2 cut(s)	372, 559
FokI	GGATG	2 cut(s)	175, 473
FspBI	CTAG	2 cut(s)	30, 402
GlaI	GCGC	2 cut(s)	449, 524
HaeII	RGCGCY	1 cut(s)	526
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	1 cut(s)	330
HhaI	GCGC	2 cut(s)	450, 525
Hin1II	CATG	2 cut(s)	376, 563
Hin6I	GCGC	2 cut(s)	448, 523
HinP1I	GCGC	2 cut(s)	448, 523
HinfI	GANTC	2 cut(s)	221, 549
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	2 cut(s)	36, 386
Hpy188III	TCNNGA	2 cut(s)	143, 383
Hpy8I	GTNNAC	2 cut(s)	36, 386
HpyAV	CCTTC	1 cut(s)	333
HpyCH4V	TGCA	4 cut(s)	36, 289, 559, 593
HpyF3I	CTNAG	6 cut(s)	105, 177, 182, 279, 456, 569
Hsp92II	CATG	2 cut(s)	376, 563
HspAI	GCGC	2 cut(s)	448, 523
Kzo9I	GATC	2 cut(s)	145, 273
LguI	GCTCTTC	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	9 cut(s)	27, 66, 105, 134, 139, 222, 343, 436, 539
MaeI	CTAG	2 cut(s)	30, 402
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	2 cut(s)	147, 275
MboI	GATC	2 cut(s)	145, 273
MboII	GAAGA	8 cut(s)	29, 191, 348, 372, 402, 486, 545, 586
MfeI	CAATTG	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	3 cut(s)	51, 237, 579
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	8 cut(s)	37, 114, 150, 177, 246, 390, 564, 589
MseI	TTAA	2 cut(s)	213, 318
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	330, 331
MunI	CAATTG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	144
NciI	CCSGG	2 cut(s)	330, 331
NdeII	GATC	2 cut(s)	145, 273
NlaIII	CATG	2 cut(s)	376, 563
NlaIV	GGNNCC	1 cut(s)	378
NmeAIII	GCCGAG	1 cut(s)	566
NmuCI	GTSAC	1 cut(s)	431
NruI	TCGCGA	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	221, 549
PsiI	TTATAA	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	378
PvuII	CAGCTG	1 cut(s)	176
RruI	TCGCGA	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	402
SapI	GCTCTTC	1 cut(s)	355
SaqAI	TTAA	2 cut(s)	213, 318
Sau3AI	GATC	2 cut(s)	145, 273
ScrFI	CCNGG	2 cut(s)	330, 331
SduI	GDGCHC	1 cut(s)	38
SmaI	CCCGGG	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	402
SpeI	ACTAGT	1 cut(s)	401
Sse9I	AATT	3 cut(s)	51, 237, 579
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	2 cut(s)	30, 402
StyD4I	CCNGG	2 cut(s)	328, 329
TasI	AATT	3 cut(s)	51, 237, 579
TfiI	GAWTC	2 cut(s)	221, 549
Tru1I	TTAA	2 cut(s)	213, 318
Tru9I	TTAA	2 cut(s)	213, 318
TseFI	GTSAC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	2 cut(s)	179, 386
TspMI	CCCGGG	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	34
XmaI	CCCGGG	1 cut(s)	329
XspI	CTAG	2 cut(s)	30, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.