Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003452.1

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Forward (+)

25221 .. 37420

Gene Structure 12200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003452.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4068 bp

atgatagatagtggaagtatggagcagtcacacaaggcacacaggtcccggcagtcgggttccaaggccgataagaagaagccccaaaaagagtcgaagaagcaaaaccccaaccccaaggcgttcgctttcagctcaactgtcaaagcaaagcgtctccagtctcgtgccgtcgagaaagagcagcgacgacttcatgttccgaccattgatcgctcctacggcgaacagcctccttttgttgttcttgtccatggacctcccaaggttggcaagtctttgttgatcaagtcccttgtaaagcattataccaaacatgatttacgggaggttaaaggcccgattaccatagtaacagggaagcagaggcgggttcagtttgtggagtgcccccatgatatcaatggcatgattgatgccgcaaaatttgctgatttagcattgcttcttatagacggaagctatggttttgaaatggaaacatttgagttccttaatatattgcaagtccatggcttcccaaaggtcatgggagttctcactcaccttgataagttcaaagatgcaaagaaactgaggaaaacaaagcagcatttaaaacatcggttctggactgaaatatatgatggagctaaattgttttatttatcaggtcttattcatgaaaagtatgtcaaacgtgagattcacaatctggctcgtttcatatctgttatgaagttccatcctttatcttggagaactgctcatccttatgttctagtagatcgttttgaagatgtcactccccctgaaaaagtgcgcttgaataataaatgtgatagaaatgtcacactttatggttatttgcgggggtgtaacatgaaaaaaggaacaaagattcatattgcaggtgttggtgattacagtgttgctggtatgacaggcttagctgatccctgtcctttaccctctgctgccaaaaagaaggggctgcgtgataaagaaaaattgttttatgcaccgatgtctggacttggggatctcctgtatgacaaagatgctgtctatataaatataaatgatcactttgttcagttttcaaaccaagatgaaaaggaggaagcaacaaacaaaggagagcttgaggatgtgggggtgaccatggttaaaagtcttcaaaacccaaaatattcgcttgatgaaaagttagagcagagcttcattaacttttatatccagaaacctaaattggaatctcaacatgatgaaaaagatcttgatgaatccagaacacacattttcatgtttgaatgtttcctccttttccacttccatcaatttcatttgttgatttcttgggtccgtgtcacaggagagcttgaggatgtgggtgtgaccatggttaaaagtcttcaaaacccaaaatattcgattgatgaaaagttagaacagagcttcattaacttttatatccagaaacctaaattggaatctcaacatgatgaaaaagatcttgatgaatccagaaaacgcattcgtatgatagagcctttagaggaacatcagtttggtcaagaaagtaatgttgaggatattgatggctcagaatcaaaatcttatcagaatgatgctgctcgtaatgttgcactaacaaaaagtgattcaagtggatctgatagagaatgtatgatagagcctttagaggaccatcagtttggggaaacaatgaaagctgggggttctggtcaagaaagtaatgttgaggatattgatggctcagaatcaaaatcttatcagaatgatgctgctcgtaatgttgcactaacaaaaagtgattcaagtggatctgatagagaaaatggtgatgtatcagatcaagatgttaaccttaaagatcacttgaaggaacatgttgagtttcatgatggaaggtcaaggagaaaagtcatctttgaaaatgaccttaatcctactgatatggaggattcagaagaggagtcagaagatgataacgacggtggcgataatgatgcagataatcatacctcttctggttcagagtcttcagaggaagatagagaaatccatgagacagatgatgatgcgggaaacatagcgaagtggaaagagtctttggcagaacggacattttcgagacaaactactaaccttatgcaacttgtatatgggaaatcttcggtttcaactaaagccaatgaagaacaagacagtagtgatgaggaaagtgacggagatgacttttttaagccaaaaggagacagaattaagaaacatagagtagaagcagaaaattggaatgttgaggactcttccaaatttacaaatcattcaatcaaagactggaatgataaaaagcttatagagagtgtgcgtgatcgctttgtcactggtgattggtcaaaggctgctaaaagaaatcaagacacagaggccacatttgaagatggggatgctgtctttggtgactttgaagatttagaaacgggtgagaagcatgatggatatcatacaaataagactagaaaagttgcaaacaacaagaaagctggcttagatgaagaggagcggaggctcaaaaagcttgctcttcgtgccaagtttgatgctcaatatccttttgacaccaaagagggtatttcttttgtgaccttaatattatctacatatgatgaacctgatacaactgaggaggaacctgatgatacacatgtaagccagtttggacgagatcgagctaaagaaagcggctatgttgacaagctgaaggaggagattgaactccggaaacaaatgaatatagctgaactcaatgaccttgatgagggcacccgattagaggttgagggtttccggactgggacttaccttcggttggaagttcatgatgttccttatgagatgtttgaatattttgatccctgccatcctgttttggttggaggaattggtcttggggaagaaagcaccggatacatgcaggccaggttaaagcggcatagatggcacaagaaagtgctaaagaccagtgaccccatcattgtatctattgggtggaggcgttaccaaacaattcctgtttatgccattgaagattgcaatggaaggcatcgcatgcttaagtacactccagaacacatgcattgccttgcaatgttttggggccctcttgcccctcccaataccggtgtggttgctttccagaatttatcaaacaatcaggcaacatttaggatcaccgccacggcagttgtgcttgagttcaaccacgcatcgcgaatagtgaagaaactcaaactagttggttacccttgcaagatattcaagaatacagcacttataaaagatatgtttacctcagatcttgaaatagctcgatttgaaggtgcttcagttcgaacagtcagtggcatccgggggcaggtgaaaaaggctgcaaaagaagaaattggtaaccaaccaaaaaagaagggtggacaaccaagagaaggaattgttaggtgcacctttgaggacaaaattaagatgagtgacattgtgtttttgcgcgcttggactcaagttgacgttccttgcttttacaacccattaaccacatctctgcaaccccgtgatctgacctggcgagggatgaaaactgtagctgagttgaggagagaacgcaatattcctattcctgttaacaaagattcactctacaagccaattgaaaggaagcagaggaagtttaacccattggtgattcccaaagcagtacaagcaagtcttccgtttaaatcaaagcctaaggatacaccgaatagaagaaagcaacttcttgaagatagaagagctgttgtgagggagcctcatgaacagaaaattcatgctctgcttcaaaatcttcggttaatcaaatctgaaaagttaaagaagcgcaagataaaggatgagaaaaaaagaaaagaaattgaagcacagaaagccaaagatgagcagttgtcaagaaagcgccagagagaagaacgacgagagagataccgggtgcaagacaaagctcagaagaaaatgagacatgcagaggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

1355

Amino Acids

156.0

Weight (kDa)

7.31

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3341
AarI	CACCTGC	2 cut(s)	881, 3412
Acc36I	ACCTGC	2 cut(s)	881, 3412
AccB1I	GGYRCC	1 cut(s)	2828
AccBSI	CCGCTC	1 cut(s)	2569
AccII	CGCG	2 cut(s)	3277, 3549
AccIII	TCCGGA	2 cut(s)	2784, 2853
AciI	CCGC	8 cut(s)	370, 420, 850, 2087, 2569, 2748, 2995, 3240
AclWI	GGATC	6 cut(s)	929, 1029, 1660, 1834, 2912, 3242
AcsI	RAATTY	4 cut(s)	425, 2318, 3205, 3861
AcuI	CTGAAG	3 cut(s)	2031, 2786, 3375
AfaI	GTAC	2 cut(s)	3125, 3756
AflII	CTTAAG	1 cut(s)	3119
AflIII	ACRYGT	2 cut(s)	1891, 2710
AgeI	ACCGGT	1 cut(s)	3185
AhlI	ACTAGT	1 cut(s)	3298
AjnI	CCWGG	2 cut(s)	2984, 3620
AjuI	GAANNNNNNNTTGG	8 cut(s)	1214, 1246, 1451, 1483, 1533, 1565, 2099, 2131
AloI	GAACNNNNNNTCC	2 cut(s)	733, 765
Alw21I	GWGCWC	1 cut(s)	3506
Alw26I	GTCTC	6 cut(s)	161, 168, 2066, 2131, 2253, 4045
Alw44I	GTGCAC	1 cut(s)	3502
AlwI	GGATC	6 cut(s)	929, 1029, 1660, 1834, 2912, 3242
Aor13HI	TCCGGA	2 cut(s)	2784, 2853
AoxI	GGCC	5 cut(s)	66, 337, 2433, 2982, 3163
ApaI	GGGCCC	1 cut(s)	3167
ApaLI	GTGCAC	1 cut(s)	3502
ApeKI	GCWGC	8 cut(s)	184, 589, 956, 973, 1613, 1787, 2408, 3434
ApoI	RAATTY	4 cut(s)	425, 2318, 3205, 3861
ArsI	GACNNNNNNTTYG	4 cut(s)	1029, 1061, 1679, 1711
AsiGI	ACCGGT	1 cut(s)	3185
AspLEI	GCGC	5 cut(s)	804, 3549, 3551, 3918, 3993
AspS9I	GGNCC	7 cut(s)	45, 257, 338, 1342, 1687, 3163, 3164
AsuC2I	CCSGG	3 cut(s)	49, 3416, 4022
AsuII	TTCGAA	1 cut(s)	3397
AvaII	GGWCC	4 cut(s)	45, 257, 1342, 1687
AxyI	CCTNAGG	1 cut(s)	3786
BaeGI	GKGCMC	4 cut(s)	392, 2831, 3167, 3506
BaeI	ACNNNNGTAYC	2 cut(s)	2697, 2730
BanI	GGYRCC	1 cut(s)	2828
BanII	GRGCYC	1 cut(s)	3167
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	4 cut(s)	1148, 1385, 2037, 3758
Bbv12I	GWGCWC	1 cut(s)	3506
BbvI	GCAGC	8 cut(s)	196, 601, 943, 960, 1600, 1774, 2395, 3421
BceAI	ACGGC	3 cut(s)	155, 238, 3261
BcgI	CGANNNNNNTGC	2 cut(s)	1994, 2028
BciT130I	CCWGG	2 cut(s)	2986, 3622
BciVI	GTATCC	2 cut(s)	2966, 3784
BclI	TGATCA	2 cut(s)	285, 1063
BcnI	CCSGG	3 cut(s)	49, 3416, 4022
BcoDI	GTCTC	6 cut(s)	161, 168, 2066, 2131, 2253, 4045
BcuI	ACTAGT	1 cut(s)	3298
BfaI	CTAG	3 cut(s)	761, 2523, 3299
BfmI	CTRYAG	1 cut(s)	3639
BfoI	RGCGCY	1 cut(s)	3994
BfrI	CTTAAG	1 cut(s)	3119
BfuAI	ACCTGC	2 cut(s)	881, 3412
BfuI	GTATCC	2 cut(s)	2966, 3784
BglII	AGATCT	3 cut(s)	1255, 1492, 3361
BlpI	GCTNAGC	1 cut(s)	928
Bme1390I	CCNGG	5 cut(s)	49, 2986, 3416, 3622, 4022
Bme18I	GGWCC	4 cut(s)	45, 257, 1342, 1687
BmgT120I	GGNCC	7 cut(s)	45, 257, 338, 1342, 1687, 3163, 3164
BmiI	GGNNCC	8 cut(s)	47, 61, 1343, 2697, 2830, 3164, 3165, 3846
BmrFI	CCNGG	5 cut(s)	49, 2986, 3416, 3622, 4022
BmrI	ACTGGG	1 cut(s)	2868
BmuI	ACTGGG	1 cut(s)	2868
BpiI	GAAGAC	4 cut(s)	1148, 1385, 2037, 3758
BplI	GAGNNNNNCTC	4 cut(s)	730, 762, 3832, 3864
BpmI	CTGGAG	2 cut(s)	143, 3114
Bpu1102I	GCTNAGC	1 cut(s)	928
Bpu14I	TTCGAA	1 cut(s)	3397
BpuEI	CTTGAG	4 cut(s)	1145, 1382, 3278, 3543
BpuMI	CCSGG	3 cut(s)	49, 3416, 4022
BsaBI	GATNNNNATC	1 cut(s)	2505
BsaJI	CCNNGG	9 cut(s)	63, 117, 253, 264, 511, 1143, 1380, 3243, 3415
BsaWI	WCCGGW	4 cut(s)	2784, 2853, 2969, 3185
Bse118I	RCCGGY	1 cut(s)	3185
Bse1I	ACTGG	6 cut(s)	160, 2348, 2395, 2719, 2863, 3027
Bse21I	CCTNAGG	1 cut(s)	3786
Bse3DI	GCAATG	4 cut(s)	440, 3106, 3142, 3159
Bse8I	GATNNNNATC	1 cut(s)	2505
BseAI	TCCGGA	2 cut(s)	2784, 2853
BseBI	CCWGG	2 cut(s)	2986, 3622
BseDI	CCNNGG	9 cut(s)	63, 117, 253, 264, 511, 1143, 1380, 3243, 3415
BseGI	GGATG	9 cut(s)	724, 748, 1135, 1372, 2458, 2926, 3411, 3636, 3934
BseJI	GATNNNNATC	1 cut(s)	2505
BseMI	GCAATG	4 cut(s)	440, 3106, 3142, 3159
BseMII	CTCAG	7 cut(s)	566, 1599, 1773, 2679, 3372, 3636, 4052
BseNI	ACTGG	6 cut(s)	160, 2348, 2395, 2719, 2863, 3027
BsePI	GCGCGC	1 cut(s)	3547
BseRI	GAGGAG	5 cut(s)	1991, 2579, 2705, 2786, 3667
BseSI	GKGCMC	4 cut(s)	392, 2831, 3167, 3506
BseXI	GCAGC	8 cut(s)	196, 601, 943, 960, 1600, 1774, 2395, 3421
BseYI	CCCAGC	1 cut(s)	1715
Bsh1236I	CGCG	2 cut(s)	3277, 3549
BshFI	GGCC	5 cut(s)	68, 339, 2435, 2984, 3165
BshNI	GGYRCC	1 cut(s)	2828
BshTI	ACCGGT	1 cut(s)	3185
BsiHKAI	GWGCWC	1 cut(s)	3506
BsiSI	CCGG	7 cut(s)	49, 2785, 2854, 2970, 3186, 3415, 4021
BslFI	GGGAC	3 cut(s)	31, 277, 2875
BsmAI	GTCTC	6 cut(s)	161, 168, 2066, 2131, 2253, 4045
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	3 cut(s)	31, 277, 2875
BsmI	GAATGC	1 cut(s)	1515
BsnI	GGCC	5 cut(s)	68, 339, 2435, 2984, 3165
Bsp119I	TTCGAA	1 cut(s)	3397
Bsp120I	GGGCCC	1 cut(s)	3163
Bsp1286I	GDGCHC	4 cut(s)	392, 2831, 3167, 3506
Bsp13I	TCCGGA	2 cut(s)	2784, 2853
Bsp1720I	GCTNAGC	1 cut(s)	928
Bsp19I	CCATGG	4 cut(s)	253, 511, 1143, 1380
Bsp68I	TCGCGA	1 cut(s)	3277
BspACI	CCGC	8 cut(s)	370, 420, 850, 2087, 2569, 2748, 2995, 3240
BspANI	GGCC	5 cut(s)	68, 339, 2435, 2984, 3165
BspCNI	CTCAG	7 cut(s)	567, 1598, 1772, 2680, 3371, 3637, 4051
BspEI	TCCGGA	2 cut(s)	2784, 2853
BspFNI	CGCG	2 cut(s)	3277, 3549
BspHI	TCATGA	4 cut(s)	661, 1903, 2884, 3850
BspLI	GGNNCC	8 cut(s)	47, 61, 1343, 2697, 2830, 3164, 3165, 3846
BspMI	ACCTGC	2 cut(s)	881, 3412
BspPI	GGATC	6 cut(s)	929, 1029, 1660, 1834, 2912, 3242
BspQI	GCTCTTC	2 cut(s)	2595, 3823
BspT104I	TTCGAA	1 cut(s)	3397
BspT107I	GGYRCC	1 cut(s)	2828
BspTI	CTTAAG	1 cut(s)	3119
BsrBI	CCGCTC	1 cut(s)	2569
BsrDI	GCAATG	4 cut(s)	440, 3106, 3142, 3159
BsrFI	RCCGGY	1 cut(s)	3185
BsrI	ACTGG	6 cut(s)	160, 2348, 2395, 2719, 2863, 3027
BssAI	RCCGGY	1 cut(s)	3185
BssECI	CCNNGG	9 cut(s)	63, 117, 253, 264, 511, 1143, 1380, 3243, 3415
BssHII	GCGCGC	1 cut(s)	3547
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	7 cut(s)	63, 117, 253, 264, 511, 1143, 1380
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	2986, 3622
Bst4CI	ACNGT	6 cut(s)	142, 908, 2000, 2213, 3403, 3640
Bst6I	CTCTTC	6 cut(s)	1968, 2035, 2317, 2556, 2595, 3823
BstAFI	CTTAAG	1 cut(s)	3119
BstAPI	GCANNNNNTGC	2 cut(s)	428, 3115
BstBI	TTCGAA	1 cut(s)	3397
BstC8I	GCNNGC	5 cut(s)	2551, 2586, 2982, 3116, 3549
BstDSI	CCRYGG	5 cut(s)	253, 511, 1143, 1380, 3243
BstEII	GGTNACC	3 cut(s)	1138, 3305, 3452
BstENI	CCTNNNNNAGG	1 cut(s)	2822
BstF5I	GGATG	9 cut(s)	724, 748, 1135, 1372, 2458, 2926, 3411, 3636, 3934
BstFNI	CGCG	2 cut(s)	3277, 3549
BstH2I	RGCGCY	1 cut(s)	3994
BstHHI	GCGC	5 cut(s)	804, 3549, 3551, 3918, 3993
BstMAI	GTCTC	6 cut(s)	161, 168, 2066, 2131, 2253, 4045
BstMWI	GCNNNNNNNGC	9 cut(s)	222, 428, 437, 2581, 2594, 3004, 3115, 3758, 3962
BstNI	CCWGG	2 cut(s)	2986, 3622
BstNSI	RCATGY	6 cut(s)	1895, 2714, 2980, 3118, 3142, 4058
BstPI	GGTNACC	3 cut(s)	1138, 3305, 3452
BstSCI	CCNGG	5 cut(s)	47, 2984, 3414, 3620, 4020
BstSFI	CTRYAG	1 cut(s)	3639
BstSLI	GKGCMC	4 cut(s)	392, 2831, 3167, 3506
BstUI	CGCG	2 cut(s)	3277, 3549
BstV1I	GCAGC	8 cut(s)	196, 601, 943, 960, 1600, 1774, 2395, 3421
BstV2I	GAAGAC	4 cut(s)	1148, 1385, 2037, 3758
BstX2I	RGATCY	6 cut(s)	1021, 1255, 1492, 1652, 1826, 3361
BstXI	CCANNNNNNTGG	1 cut(s)	1697
BstYI	RGATCY	6 cut(s)	1021, 1255, 1492, 1652, 1826, 3361
Bsu36I	CCTNAGG	1 cut(s)	3786
BsuI	GTATCC	2 cut(s)	2966, 3784
BsuRI	GGCC	5 cut(s)	68, 339, 2435, 2984, 3165
BtgI	CCRYGG	5 cut(s)	253, 511, 1143, 1380, 3243
BtgZI	GCGATG	2 cut(s)	3095, 3258
BtsCI	GGATG	9 cut(s)	724, 748, 1135, 1372, 2458, 2926, 3411, 3636, 3934
BtsIMutI	CAGTG	4 cut(s)	913, 2388, 3034, 3412
BtuMI	TCGCGA	1 cut(s)	3277
BveI	ACCTGC	2 cut(s)	881, 3412
Cac8I	GCNNGC	5 cut(s)	2551, 2586, 2982, 3116, 3549
CciI	TCATGA	4 cut(s)	661, 1903, 2884, 3850
CfoI	GCGC	5 cut(s)	804, 3549, 3551, 3918, 3993
Cfr10I	RCCGGY	1 cut(s)	3185
Cfr13I	GGNCC	7 cut(s)	45, 257, 338, 1342, 1687, 3163, 3164
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	3124, 3755
CspAI	ACCGGT	1 cut(s)	3185
CspCI	CAANNNNNGTGG	2 cut(s)	3232, 3267
CviQI	GTAC	2 cut(s)	3124, 3755
DraI	TTTAAA	2 cut(s)	597, 3775
Eam1104I	CTCTTC	6 cut(s)	1968, 2035, 2317, 2556, 2595, 3823
EarI	CTCTTC	6 cut(s)	1968, 2035, 2317, 2556, 2595, 3823
Eco130I	CCWWGG	7 cut(s)	63, 117, 253, 264, 511, 1143, 1380
Eco24I	GRGCYC	1 cut(s)	3167
Eco32I	GATATC	2 cut(s)	400, 2507
Eco47I	GGWCC	4 cut(s)	45, 257, 1342, 1687
Eco57I	CTGAAG	3 cut(s)	2031, 2786, 3375
Eco81I	CCTNAGG	1 cut(s)	3786
Eco91I	GGTNACC	3 cut(s)	1138, 3305, 3452
EcoNI	CCTNNNNNAGG	1 cut(s)	2822
EcoO109I	RGGNCCY	3 cut(s)	45, 3163, 3164
EcoO65I	GGTNACC	3 cut(s)	1138, 3305, 3452
EcoRII	CCWGG	2 cut(s)	2984, 3620
EcoRV	GATATC	2 cut(s)	400, 2507
EcoT14I	CCWWGG	7 cut(s)	63, 117, 253, 264, 511, 1143, 1380
EcoT22I	ATGCAT	1 cut(s)	3144
EcoT38I	GRGCYC	1 cut(s)	3167
ErhI	CCWWGG	7 cut(s)	63, 117, 253, 264, 511, 1143, 1380
Esp3I	CGTCTC	1 cut(s)	161
FalI	AAGNNNNNCTT	4 cut(s)	1107, 1139, 3750, 3782
FaqI	GGGAC	3 cut(s)	31, 277, 2875
FauI	CCCGC	3 cut(s)	363, 843, 2080
FauNDI	CATATG	1 cut(s)	2668
FbaI	TGATCA	2 cut(s)	285, 1063
FokI	GGATG	9 cut(s)	711, 735, 1142, 1379, 2465, 2913, 3398, 3643, 3941
FriOI	GRGCYC	1 cut(s)	3167
FspBI	CTAG	3 cut(s)	761, 2523, 3299
GlaI	GCGC	5 cut(s)	803, 3548, 3550, 3917, 3992
GsaI	CCCAGC	1 cut(s)	1719
GsuI	CTGGAG	2 cut(s)	143, 3114
HaeII	RGCGCY	1 cut(s)	3994
HaeIII	GGCC	5 cut(s)	68, 339, 2435, 2984, 3165
HapII	CCGG	7 cut(s)	49, 2785, 2854, 2970, 3186, 3415, 4021
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	5 cut(s)	804, 3549, 3551, 3918, 3993
Hin6I	GCGC	5 cut(s)	802, 3547, 3549, 3916, 3991
HinP1I	GCGC	5 cut(s)	802, 3547, 3549, 3916, 3991
HincII	GTYRAC	4 cut(s)	1867, 2758, 3565, 3682
HindII	GTYRAC	4 cut(s)	1867, 2758, 3565, 3682
HindIII	AAGCTT	2 cut(s)	2357, 2582
HpaI	GTTAAC	2 cut(s)	1867, 3682
HpaII	CCGG	7 cut(s)	49, 2785, 2854, 2970, 3186, 3415, 4021
Hpy166II	GTNNAC	8 cut(s)	1867, 2758, 3126, 3354, 3476, 3504, 3565, 3682
Hpy8I	GTNNAC	8 cut(s)	1867, 2758, 3126, 3354, 3476, 3504, 3565, 3682
Hpy99I	CGWCG	4 cut(s)	176, 192, 2000, 4011
HpyAV	CCTTC	9 cut(s)	961, 1879, 1905, 2761, 2879, 3099, 3377, 3463, 3482
HpyCH4III	ACNGT	6 cut(s)	142, 908, 2000, 2213, 3403, 3640
HpyCH4IV	ACGT	2 cut(s)	679, 3567
HpyF10VI	GCNNNNNNNGC	9 cut(s)	222, 428, 437, 2581, 2594, 3004, 3115, 3758, 3962
HpySE526I	ACGT	2 cut(s)	679, 3567
HspAI	GCGC	5 cut(s)	802, 3547, 3549, 3916, 3991
Kpn2I	TCCGGA	2 cut(s)	2784, 2853
Ksp22I	TGATCA	2 cut(s)	285, 1063
KspAI	GTTAAC	2 cut(s)	1867, 3682
LguI	GCTCTTC	2 cut(s)	2595, 3823
LmnI	GCTCC	5 cut(s)	22, 221, 629, 2566, 3844
Lsp1109I	GCAGC	8 cut(s)	196, 601, 943, 960, 1600, 1774, 2395, 3421
MaeI	CTAG	3 cut(s)	761, 2523, 3299
MaeII	ACGT	2 cut(s)	679, 3567
MbiI	CCGCTC	1 cut(s)	2569
MfeI	CAATTG	1 cut(s)	3705
MflI	RGATCY	6 cut(s)	1021, 1255, 1492, 1652, 1826, 3361
MhlI	GDGCHC	4 cut(s)	392, 2831, 3167, 3506
MlyI	GAGTC	6 cut(s)	101, 1988, 2051, 2120, 2303, 3550
MmeI	TCCRAC	3 cut(s)	227, 2856, 2920
Mph1103I	ATGCAT	1 cut(s)	3144
MroI	TCCGGA	2 cut(s)	2784, 2853
MslI	CAYNNNNRTG	3 cut(s)	753, 1283, 1520
MspCI	CTTAAG	1 cut(s)	3119
MspI	CCGG	7 cut(s)	49, 2785, 2854, 2970, 3186, 3415, 4021
MspR9I	CCNGG	5 cut(s)	49, 2986, 3416, 3622, 4022
MunI	CAATTG	1 cut(s)	3705
Mva1269I	GAATGC	1 cut(s)	1515
MvaI	CCWGG	2 cut(s)	2986, 3622
MvnI	CGCG	2 cut(s)	3277, 3549
MwoI	GCNNNNNNNGC	9 cut(s)	222, 428, 437, 2581, 2594, 3004, 3115, 3758, 3962
NciI	CCSGG	3 cut(s)	49, 3416, 4022
NcoI	CCATGG	4 cut(s)	253, 511, 1143, 1380
NdeI	CATATG	1 cut(s)	2668
NlaIV	GGNNCC	8 cut(s)	47, 61, 1343, 2697, 2830, 3164, 3165, 3846
NruI	TCGCGA	1 cut(s)	3277
NsiI	ATGCAT	1 cut(s)	3144
NspI	RCATGY	6 cut(s)	1895, 2714, 2980, 3118, 3142, 4058
NspV	TTCGAA	1 cut(s)	3397
PaeI	GCATGC	1 cut(s)	3118
PagI	TCATGA	4 cut(s)	661, 1903, 2884, 3850
PaqCI	CACCTGC	2 cut(s)	881, 3412
PauI	GCGCGC	1 cut(s)	3547
PciI	ACATGT	2 cut(s)	1891, 2710
PciSI	GCTCTTC	2 cut(s)	2595, 3823
PcsI	WCGNNNNNNNCGW	1 cut(s)	2001
PctI	GAATGC	1 cut(s)	1515
PinAI	ACCGGT	1 cut(s)	3185
PleI	GAGTC	6 cut(s)	100, 1987, 2050, 2119, 2303, 3550
PpsI	GAGTC	6 cut(s)	100, 1987, 2050, 2119, 2303, 3550
PpuMI	RGGWCCY	1 cut(s)	45
PscI	ACATGT	2 cut(s)	1891, 2710
PsiI	TTATAA	1 cut(s)	3341
Psp5II	RGGWCCY	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	2984, 3620
PspEI	GGTNACC	3 cut(s)	1138, 3305, 3452
PspFI	CCCAGC	1 cut(s)	1715
PspGI	CCWGG	2 cut(s)	2984, 3620
PspN4I	GGNNCC	8 cut(s)	47, 61, 1343, 2697, 2830, 3164, 3165, 3846
PspOMI	GGGCCC	1 cut(s)	3163
PspPI	GGNCC	7 cut(s)	45, 257, 338, 1342, 1687, 3163, 3164
PspPPI	RGGWCCY	1 cut(s)	45
PsuI	RGATCY	6 cut(s)	1021, 1255, 1492, 1652, 1826, 3361
PteI	GCGCGC	1 cut(s)	3547
RruI	TCGCGA	1 cut(s)	3277
RsaI	GTAC	2 cut(s)	3125, 3756
RsaNI	GTAC	2 cut(s)	3124, 3755
RseI	CAYNNNNRTG	3 cut(s)	753, 1283, 1520
SapI	GCTCTTC	2 cut(s)	2595, 3823
Sau96I	GGNCC	7 cut(s)	45, 257, 338, 1342, 1687, 3163, 3164
SchI	GAGTC	6 cut(s)	101, 1988, 2051, 2120, 2303, 3550
ScrFI	CCNGG	5 cut(s)	49, 2986, 3416, 3622, 4022
SduI	GDGCHC	4 cut(s)	392, 2831, 3167, 3506
SfcI	CTRYAG	1 cut(s)	3639
SfuI	TTCGAA	1 cut(s)	3397
SinI	GGWCC	4 cut(s)	45, 257, 1342, 1687
SmiMI	CAYNNNNRTG	3 cut(s)	753, 1283, 1520
SmlI	CTYRAG	5 cut(s)	1124, 1361, 3119, 3257, 3558
SmoI	CTYRAG	5 cut(s)	1124, 1361, 3119, 3257, 3558
SpeI	ACTAGT	1 cut(s)	3298
SphI	GCATGC	1 cut(s)	3118
SsiI	CCGC	8 cut(s)	370, 420, 850, 2087, 2569, 2748, 2995, 3240
SspI	AATATT	5 cut(s)	1172, 1409, 2658, 2912, 3667
SspMI	CTAG	3 cut(s)	761, 2523, 3299
StyD4I	CCNGG	5 cut(s)	47, 2984, 3414, 3620, 4020
StyI	CCWWGG	7 cut(s)	63, 117, 253, 264, 511, 1143, 1380
TaaI	ACNGT	6 cut(s)	142, 908, 2000, 2213, 3403, 3640
TaiI	ACGT	2 cut(s)	682, 3570
TaqI	TCGA	7 cut(s)	95, 174, 1412, 2135, 2734, 3376, 3397
TatI	WGTACW	2 cut(s)	3123, 3754
TauI	GCSGC	3 cut(s)	422, 2751, 2998
TscAI	CASTG	4 cut(s)	913, 2395, 3034, 3412
TseI	GCWGC	8 cut(s)	184, 589, 956, 973, 1613, 1787, 2408, 3434
TspGWI	ACGGA	5 cut(s)	471, 1334, 2140, 2247, 3759
TspRI	CASTG	4 cut(s)	913, 2395, 3034, 3412
Vha464I	CTTAAG	1 cut(s)	3119
VneI	GTGCAC	1 cut(s)	3502
VpaK11BI	GGWCC	4 cut(s)	45, 257, 1342, 1687
XagI	CCTNNNNNAGG	1 cut(s)	2822
XapI	RAATTY	4 cut(s)	425, 2318, 3205, 3861
XceI	RCATGY	6 cut(s)	1895, 2714, 2980, 3118, 3142, 4058
XcmI	CCANNNNNNNNNTGG	2 cut(s)	401, 3187
XspI	CTAG	3 cut(s)	761, 2523, 3299
Zsp2I	ATGCAT	1 cut(s)	3144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.