Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001520.1

Orthogroup ID

OG0000907

Physical Location & Seq

Genomic Coordinates Reverse (-)

41831 .. 44951

Gene Structure 3121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001520.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ctgttctaccaggccaggttaaagcggcatagatggcacaagaaagtgctaaagaccagtgaccccatcattgtatctattgggtggaggcgttaccaaacaattcctgtttatgccattgaagattgcaatggaaggcatcgcatgcttaagtatactccagaacacatgcattgccttgcaatgttttggggccctcttgcccctcccaatactggtgtggttgctttccagaatttatcaaacaatcaggcaacatttaggatcaccgccacggcagttgtgcttgagttcaaccatgcgtcgcgaatagtgaagaaactcaaactagttggttacccttgcaagatattcaagaatacagcacttataaaagatatgtttacctcagatcttgaaatagctcgatttgaagggatgaaaactgtagctgagttgaggagagaacgcaatattcctattcctgttaacaaagattcactctacaagccaattgaaaggaagcagaggaagttcaacccactggtgattcccaaagcagtacaagcaagtcttccatttaaatcaaagcctaaggatacaccgaatagaagaaagcaacttcttgaggatagaagagctgttgtgagggagcctcatgaacagaaaattcatgctctgcttcaaaatcttcggttaatcaaatatgagaagttaaagaaacgcaagataaaggatgagaaaaaaagaaaagaaattgaagcacagaaagccaaagatgagcagttgacaagaaagcgccagagagaagaacgacgagagagataccgggtgcaagacaaagctcagaagaaaatgaggagacacgcggaagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

285

Amino Acids

34.0

Weight (kDa)

10.45

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06720 AT1G06720 AT1G06720
fragaria_vesca	FvH4_4g10660
malus_domestica	MD00G1071300.v1.1 MD00G1152200.v1.1 MD03G1154000.v1.1
prunus_persica	Prupe.1G548200_v2.0.a1 Prupe.8G069100_v2.0.a1 Prupe.8G069100_v2.0.a1
pyrus_communis	pycom03g10780 pycom03g10790 pycom07g03680 pycom11g14630 pycom11g14640
rosa_chinensis	RchiOBHm_Chr2g0114561 RchiOBHm_Chr2g0114571 RchiOBHm_Chr4g0406311 RchiOBHm_Chr5g0051051
rosa_laevigata	RLG00000008777 RLG00000018114 RLG00000034749
rosa_multiflora	Rmu_co8051646.1_g000001 Rmu_sc0000370.1_g000003 Rmu_sc0000371.1_g000013 Rmu_sc0000446.1_g000025 Rmu_sc0000898.1_g000055 Rmu_sc0001520.1_g000010 Rmu_sc0003452.1_g000005 Rmu_sc0030223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029430 Rroxscaffold_2G00130290 Rroxscaffold_3G00239130 Rroxscaffold_3G00239160
rosa_rugosa	Rorug04G0068100 Rorug04G0068200 Rorug04G0068300 Rorug05G0265700 Rorug07G0181200 Rorug07G0181300 Rorug07G0181400 Rorug07G0181500 Rorug07G0181500 Rorug07G0181600 Rorug07G0181800
rosa_samantha	Rh2AG248700 Rh2BG258300 Rh2BG258500 Rh2CG252100 Rh2CG252200 Rh2CG252500 Rh2DG256800 Rh4AG137200 Rh4BG134800 Rh4CG145400 Rh4DG131800 Rh5AG337900 Rh5BG347600 Rh5CG375000 Rh5DG360700
rosa_wichuraiana	Rw0G006840 Rw0G023620 Rw2G019340 Rw4G011120 Rw5G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	155
AccII	CGCG	2 cut(s)	307, 848
AciI	CCGC	3 cut(s)	25, 270, 848
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	235, 648
AfaI	GTAC	1 cut(s)	543
AfiI	CCNNNNNNNGG	1 cut(s)	215
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	9 cut(s)	122, 295, 355, 398, 413, 497, 517, 665, 740
AhlI	ACTAGT	1 cut(s)	328
AjnI	CCWGG	2 cut(s)	9, 14
AluBI	AGCT	4 cut(s)	404, 431, 620, 824
AluI	AGCT	4 cut(s)	404, 431, 620, 824
Alw26I	GTCTC	1 cut(s)	835
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	2 cut(s)	12, 193
ApaI	GGGCCC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	235, 648
AspLEI	GCGC	1 cut(s)	780
AspS9I	GGNCC	2 cut(s)	193, 194
AsuC2I	CCSGG	1 cut(s)	809
AsuHPI	GGTGA	2 cut(s)	259, 538
AxyI	CCTNAGG	1 cut(s)	573
BaeGI	GKGCMC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	545
BccI	CCATC	2 cut(s)	27, 74
BceAI	ACGGC	1 cut(s)	291
BciT130I	CCWGG	2 cut(s)	11, 16
BciVI	GTATCC	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	809
BcoDI	GTCTC	1 cut(s)	835
BcuI	ACTAGT	1 cut(s)	328
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	781
BfrI	CTTAAG	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	571
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	3 cut(s)	11, 16, 809
BmgT120I	GGNCC	2 cut(s)	193, 194
BmiI	GGNNCC	3 cut(s)	194, 195, 633
BmrFI	CCNGG	3 cut(s)	11, 16, 809
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	545
BplI	GAGNNNNNCTC	2 cut(s)	619, 651
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	2 cut(s)	308, 626
BpuMI	CCSGG	1 cut(s)	809
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	3 cut(s)	57, 220, 528
Bse21I	CCTNAGG	1 cut(s)	573
Bse3DI	GCAATG	3 cut(s)	136, 172, 189
BseBI	CCWGG	2 cut(s)	11, 16
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	423, 721
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	3 cut(s)	136, 172, 189
BseMII	CTCAG	3 cut(s)	402, 423, 839
BseNI	ACTGG	3 cut(s)	57, 220, 528
BseRI	GAGGAG	2 cut(s)	454, 853
BseSI	GKGCMC	1 cut(s)	197
Bsh1236I	CGCG	2 cut(s)	307, 848
BshFI	GGCC	2 cut(s)	14, 195
BsiSI	CCGG	1 cut(s)	808
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	835
BsnI	GGCC	2 cut(s)	14, 195
Bsp120I	GGGCCC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	264, 391
Bsp68I	TCGCGA	1 cut(s)	307
BspACI	CCGC	3 cut(s)	25, 270, 848
BspANI	GGCC	2 cut(s)	14, 195
BspCNI	CTCAG	3 cut(s)	401, 424, 838
BspFNI	CGCG	2 cut(s)	307, 848
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	3 cut(s)	194, 195, 633
BspPI	GGATC	1 cut(s)	272
BspQI	GCTCTTC	1 cut(s)	610
BspTI	CTTAAG	1 cut(s)	149
BsrDI	GCAATG	3 cut(s)	136, 172, 189
BsrI	ACTGG	3 cut(s)	57, 220, 528
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	264, 391
BssNAI	GTATAC	1 cut(s)	156
Bst1107I	GTATAC	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	11, 16
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	610
BstAFI	CTTAAG	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	4 cut(s)	388, 432, 573, 825
BstDSI	CCRYGG	1 cut(s)	273
BstEII	GGTNACC	1 cut(s)	335
BstF5I	GGATG	2 cut(s)	423, 721
BstFNI	CGCG	2 cut(s)	307, 848
BstH2I	RGCGCY	1 cut(s)	781
BstHHI	GCGC	1 cut(s)	780
BstKTI	GATC	2 cut(s)	267, 394
BstMAI	GTCTC	1 cut(s)	835
BstMBI	GATC	2 cut(s)	264, 391
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 145, 545, 749
BstNI	CCWGG	2 cut(s)	11, 16
BstNSI	RCATGY	2 cut(s)	148, 172
BstPI	GGTNACC	1 cut(s)	335
BstSCI	CCNGG	3 cut(s)	9, 14, 807
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	197
BstUI	CGCG	2 cut(s)	307, 848
BstV2I	GAAGAC	1 cut(s)	545
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BstZ17I	GTATAC	1 cut(s)	156
Bsu36I	CCTNAGG	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	14, 195
BtgI	CCRYGG	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	423, 721
BtsIMutI	CAGTG	2 cut(s)	64, 521
BtuMI	TCGCGA	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	146
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	1 cut(s)	780
Cfr13I	GGNCC	2 cut(s)	193, 194
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	542
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	5 cut(s)	145, 169, 299, 638, 653
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	4 cut(s)	388, 432, 573, 825
DpnI	GATC	2 cut(s)	266, 393
DpnII	GATC	2 cut(s)	264, 391
DraI	TTTAAA	1 cut(s)	562
Eam1104I	CTCTTC	1 cut(s)	610
EarI	CTCTTC	1 cut(s)	610
Eco24I	GRGCYC	1 cut(s)	197
Eco81I	CCTNAGG	1 cut(s)	573
Eco91I	GGTNACC	1 cut(s)	335
EcoO109I	RGGNCCY	2 cut(s)	193, 194
EcoO65I	GGTNACC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	9, 14
EcoT22I	ATGCAT	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	5 cut(s)	148, 172, 302, 641, 656
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FatI	CATG	5 cut(s)	144, 168, 298, 637, 652
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	2 cut(s)	430, 728
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	779
GluI	GCNGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	781
HaeIII	GGCC	2 cut(s)	14, 195
HapII	CCGG	1 cut(s)	808
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	1 cut(s)	780
Hin1II	CATG	5 cut(s)	148, 172, 302, 641, 656
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HincII	GTYRAC	2 cut(s)	469, 768
HindII	GTYRAC	2 cut(s)	469, 768
HinfI	GANTC	2 cut(s)	476, 529
HpaI	GTTAAC	1 cut(s)	469
HpaII	CCGG	1 cut(s)	808
HphI	GGTGA	2 cut(s)	259, 538
Hpy166II	GTNNAC	4 cut(s)	156, 384, 469, 768
Hpy188I	TCNGA	2 cut(s)	391, 828
Hpy188III	TCNNGA	7 cut(s)	161, 232, 306, 355, 395, 605, 638
Hpy8I	GTNNAC	4 cut(s)	156, 384, 469, 768
Hpy99I	CGWCG	2 cut(s)	307, 798
HpyAV	CCTTC	2 cut(s)	129, 407
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	5 cut(s)	129, 172, 182, 345, 814
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 145, 545, 749
HpyF3I	CTNAG	4 cut(s)	388, 432, 573, 825
Hsp92II	CATG	5 cut(s)	148, 172, 302, 641, 656
HspAI	GCGC	1 cut(s)	778
KspAI	GTTAAC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	264, 391
LguI	GCTCTTC	1 cut(s)	610
LmnI	GCTCC	1 cut(s)	631
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	3 cut(s)	59, 92, 335
MalI	GATC	2 cut(s)	266, 393
MboI	GATC	2 cut(s)	264, 391
MboII	GAAGA	8 cut(s)	134, 328, 545, 603, 627, 662, 800, 841
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	5 cut(s)	102, 235, 492, 648, 735
Mph1103I	ATGCAT	1 cut(s)	174
MseI	TTAA	6 cut(s)	20, 150, 468, 561, 677, 695
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	808
MspR9I	CCNGG	3 cut(s)	11, 16, 809
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	2 cut(s)	11, 16
MvnI	CGCG	2 cut(s)	307, 848
MwoI	GCNNNNNNNGC	4 cut(s)	34, 145, 545, 749
NciI	CCSGG	1 cut(s)	809
NdeII	GATC	2 cut(s)	264, 391
NlaIII	CATG	5 cut(s)	148, 172, 302, 641, 656
NlaIV	GGNNCC	3 cut(s)	194, 195, 633
NmuCI	GTSAC	1 cut(s)	59
NruI	TCGCGA	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	174
NspI	RCATGY	2 cut(s)	148, 172
PaeI	GCATGC	1 cut(s)	148
PagI	TCATGA	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	476, 529
PkrI	GCNGC	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	9, 14
PspEI	GGTNACC	1 cut(s)	335
PspGI	CCWGG	2 cut(s)	9, 14
PspN4I	GGNNCC	3 cut(s)	194, 195, 633
PspOMI	GGGCCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	193, 194
PsuI	RGATCY	1 cut(s)	391
RruI	TCGCGA	1 cut(s)	307
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
SapI	GCTCTTC	1 cut(s)	610
SaqAI	TTAA	6 cut(s)	20, 150, 468, 561, 677, 695
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	264, 391
Sau96I	GGNCC	2 cut(s)	193, 194
ScrFI	CCNGG	3 cut(s)	11, 16, 809
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	6 cut(s)	20, 389, 406, 433, 622, 826
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	426
SmiI	ATTTAAAT	1 cut(s)	562
SmlI	CTYRAG	3 cut(s)	149, 287, 605
SmoI	CTYRAG	3 cut(s)	149, 287, 605
SpeI	ACTAGT	1 cut(s)	328
SphI	GCATGC	1 cut(s)	148
Sse9I	AATT	5 cut(s)	102, 235, 492, 648, 735
SsiI	CCGC	3 cut(s)	25, 270, 848
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	3 cut(s)	9, 14, 807
SwaI	ATTTAAAT	1 cut(s)	562
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	1 cut(s)	406
TasI	AATT	5 cut(s)	102, 235, 492, 648, 735
TatI	WGTACW	1 cut(s)	541
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	476, 529
Tru1I	TTAA	6 cut(s)	20, 150, 468, 561, 677, 695
Tru9I	TTAA	6 cut(s)	20, 150, 468, 561, 677, 695
TscAI	CASTG	2 cut(s)	64, 528
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	434, 641, 654
TspRI	CASTG	2 cut(s)	64, 528
Vha464I	CTTAAG	1 cut(s)	149
XapI	RAATTY	2 cut(s)	235, 648
XceI	RCATGY	2 cut(s)	148, 172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	155
XspI	CTAG	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.